mRNA_E_fasciculatus_S2_contig8399.16532.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8399.16532.1
Unique NamemRNA_E_fasciculatus_S2_contig8399.16532.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8399.16532.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX46_ECTSI)

HSP 1 Score: 435 bits (1118), Expect = 3.470e-151
Identity = 260/306 (84.97%), Postives = 271/306 (88.56%), Query Frame = 1 
Query:   31 MVQMRPYAERVAEFRPFACSDFIIPMLTKLCPPGEKMDRWLGNAKVPVAVTMHDFMQAVKEVCPDVPAECPAMVVFLIQASRLAESLDDRCRREKLNKPNAGRPSVDLDEALMVTMPVWSAEEEYLIMKVTLNAIGVLRRWMRRPQRRRAAGETLPPNQQPEKNRAAKVKTARKTKRPTLTSSNNSETAKA-RLAATSEAPPALDSGSTSNNKASRRGSTRKMRGSVSSPSVTVRSP-----------DTAXXXXXXXXXXXXXXXXXXXXXXEEAQHESPRARQRLEQAKALDKEVEASREEGGG 912
            MVQ RPYAERVAEFRPFACSDFIIPM TKLCPPGEKMDRWLGNAKVPVAVTMHDFMQAVKEVCPDVPAECPAMVVFLIQ  RLAESLDD+CRREKLNKPNAGRPSVDLDEAL V MPVWSAEEEYLIMKVTLNAI +LRRWMRRP+RRRAAGETLPP QQPE N+AA+ KTARKTKRPTLTSSNN ETAKA RLAATSEAPP++D+  TSN+KA RRGSTRKMRGS SSPSVT  +P              XXXXXXXXXXXXXXXXXXXXX EE QHESPRARQRLEQAK LDK+VEASREEGGG
Sbjct:    1 MVQARPYAERVAEFRPFACSDFIIPMFTKLCPPGEKMDRWLGNAKVPVAVTMHDFMQAVKEVCPDVPAECPAMVVFLIQIGRLAESLDDQCRREKLNKPNAGRPSVDLDEALRVAMPVWSAEEEYLIMKVTLNAIDILRRWMRRPRRRRAAGETLPPTQQPEPNQAARAKTARKTKRPTLTSSNNKETAKAARLAATSEAPPSIDNSRTSNSKAPRRGSTRKMRGSASSPSVTAPNPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEEGQHESPRARQRLEQAKVLDKQVEASREEGGG 306
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BLAST of mRNA_E_fasciculatus_S2_contig8399.16532.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS0_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 4.720e-96
Identity = 197/304 (64.80%), Postives = 211/304 (69.41%), Query Frame = 1 
Query:    1 AFAELIGVPIMVQMRPYAERVAEFRPFACSDFIIPMLTKLCPPGEKMDRWLGNAKVPVAVTMHDFMQAVKEVCPDVPAECPAMVVFLIQASRLAESLDDRCRREKLNKPNAGRPSVDLDEALMVTMPVWSAEEEYLIMKVTLNAIGVLRRWMRRPQRRRAAGETLPPNQQPEKNRAAKVKTARKTKRPTLTSSNNSETAKARLAATSEAPPALDSGSTSNNKASRRGSTRKMRGSVSSPSVTVRSPDTAXXXXXXXXXXXXXXXXXXXXXXEEAQHESPRARQRLEQAKALDKEVEASREEGGG 912
            AFAELIGVPIMVQ RPY ERV EFRPFACSDFIIP+LTKLCPPGEKMD       +P +++   ++Q    +CPDVPAECPAMV+FLIQ  RLAESLDDRCRREKLNKPNAGRPSVDLDEAL + MPVWSAEEEYLIMKVTLNAI VLRRWMRRP+RRRAAGETLPP QQPE N+AAKVKTARKTKR TLT                                                      P+  XXXXXXXXXXXXXXX       E  QHES RARQRLEQAK LDK+VEASREEGGG
Sbjct:   36 AFAELIGVPIMVQARPYVERVVEFRPFACSDFIIPVLTKLCPPGEKMD------SLP-SISSSVWLQ----ICPDVPAECPAMVMFLIQIGRLAESLDDRCRREKLNKPNAGRPSVDLDEALRIAMPVWSAEEEYLIMKVTLNAIDVLRRWMRRPRRRRAAGETLPPTQQPEPNQAAKVKTARKTKRSTLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNPXXXXXXXXXXXXXXXXTAAANEGE--QHESTRARQRLEQAKVLDKKVEASREEGGG 326
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BLAST of mRNA_E_fasciculatus_S2_contig8399.16532.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA3_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 4.440e-6
Identity = 24/58 (41.38%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    4 FAELIGVPIMVQMRPYAERVAEFRPFACSDFIIPMLTKLCPPGEKMDRWLGNAKVPVA 177
            FA+L G+P+        E   +FRPFA +D+ +P++  L PPGE +D W+G  K PV+
Sbjct:   23 FAKLSGIPVST------EDSRDFRPFALTDYFLPIVRLLVPPGEDLDLWMGTGKEPVS 74
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8399.16532.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized3.470e-15184.97protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.720e-9664.80protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.440e-641.38protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8399contigE_fasciculatus_S2_contig8399:661..4294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size915
Hectar predicted targeting categoryother localisation
Exons6
Cds size885
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8399.16532.1prot_E_fasciculatus_S2_contig8399.16532.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8399 691..4294 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842498.4654288-UTR-E_fasciculatus_S2_contig8399:660..6901696842498.4654288-UTR-E_fasciculatus_S2_contig8399:660..690Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8399 661..690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842498.4776263-CDS-E_fasciculatus_S2_contig8399:690..8061696842498.4776263-CDS-E_fasciculatus_S2_contig8399:690..806Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8399 691..806 +
1696842498.4869142-CDS-E_fasciculatus_S2_contig8399:1268..13351696842498.4869142-CDS-E_fasciculatus_S2_contig8399:1268..1335Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8399 1269..1335 +
1696842498.4959536-CDS-E_fasciculatus_S2_contig8399:2102..21601696842498.4959536-CDS-E_fasciculatus_S2_contig8399:2102..2160Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8399 2103..2160 +
1696842498.5055847-CDS-E_fasciculatus_S2_contig8399:2784..28941696842498.5055847-CDS-E_fasciculatus_S2_contig8399:2784..2894Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8399 2785..2894 +
1696842498.5156054-CDS-E_fasciculatus_S2_contig8399:3333..34131696842498.5156054-CDS-E_fasciculatus_S2_contig8399:3333..3413Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8399 3334..3413 +
1696842498.526994-CDS-E_fasciculatus_S2_contig8399:3840..42941696842498.526994-CDS-E_fasciculatus_S2_contig8399:3840..4294Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8399 3841..4294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8399.16532.1

>prot_E_fasciculatus_S2_contig8399.16532.1 ID=prot_E_fasciculatus_S2_contig8399.16532.1|Name=mRNA_E_fasciculatus_S2_contig8399.16532.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=295bp
MVQMRPYAERVAEFRPFACSDFIIPMLTKLCPPGEKMDRWLGNAKVPVAV
TMHDFMQAVKEVCPDVPAECPAMVVFLIQASRLAESLDDRCRREKLNKPN
AGRPSVDLDEALMVTMPVWSAEEEYLIMKVTLNAIGVLRRWMRRPQRRRA
AGETLPPNQQPEKNRAAKVKTARKTKRPTLTSSNNSETAKARLAATSEAP
PALDSGSTSNNKASRRGSTRKMRGSVSSPSVTVRSPDTAAAAAVGGGAQD
NQAAAAAAATSEEAQHESPRARQRLEQAKALDKEVEASREEGGG*
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mRNA from alignment at E_fasciculatus_S2_contig8399:661..4294+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8399.16532.1 ID=mRNA_E_fasciculatus_S2_contig8399.16532.1|Name=mRNA_E_fasciculatus_S2_contig8399.16532.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3634bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8399:661..4294+ (Ectocarpus fasciculatus EfasUO2)
GCGTTCGCTGAACTGATAGGAGTCCCCATCATGGTCCAGATGCGGCCGTA
CGCGGAGCGGGTGGCGGAGTTCAGGCCCTTCGCCTGCTCCGACTTCATCA
TCCCGATGCTCACCAAGCTTTGTCCGCCCGGAGAGAAAATGGACAGGTTC
GTGGGTGTCTAGTCTCTGTTCATCGTGATGCGTAGGTATAGCGCCGTTCA
CAGATCTCTCAGAGGGGGGCGAGATATCACAAGCGAGGGCATCCTTGGCC
CGACACCGACGAACACGCCGGCAGCGCGGTCCCTTTTGTTCCTAAACATC
AACCGCAACAGCATCCAACACACAGAGGCGTGACCCTAACTAAGCTAAGT
GTGAGTCGCGGCCGTCGTGGAAATGGCGGGGCTCCTTCGGATACGTCGTA
CATATCCCAGTCGCCGAGCAGGGTTTCGGAGAAGGGGCGGAGAGGCACCG
CCCAAGTATTGAGCTGTGACGCTTACTCGTTGCCCATGAACGTATCACCA
CCAAAATGAATGTTCCGCCGGCGAGACGGAGCTTCTCTGCTGGCGATTCT
CAGCTGACGATACAGGCTACAACGTTGGTCGCATGTTGTGTTGTTTCCTC
CCCTGCAGATGGCTCGGCAACGCCAAAGTCCCGGTGGCTGTCACGATGCA
CGACTTCATGCAGGCGGTCAAAGAGGTAGGGGGGGGGGATTTTTTTTTCG
CATCGCGCGTACCCTGGGGAACCGCGATCGTCTTTTCCGTTCATCACGCA
ACCGTGCTTTGCAATTTGGCACTATTACTCTCAGTAAGTGTTCATTCGCC
TTTGGCATGCACTCTGGCTCCCGAATCCTGCATCACCTTTGGCGTGAAAC
ACGATAGTCTAGGGCTACAGTTGCAGGCTCTGATCTCCGTTGTGTGGTGG
ACGTCATTTTAGGAACTATCACCCATCACATCGCAGGGGCCTGCGAGTGC
GAGGGGGTGCGTCTGGTGTTGTTGACTGGTTGCGATACGATCGTTGTTCG
CTCTTCTTCTGCGTATGTTGCGGCTGGCAACCGCGATTGCTCCCCATTTC
TACCACTACCACTACTGGTCGATGCCACTCCTACCGCTACCACTACTAGC
CCCACCCGGCCACACTGTGCTAGTATGGGTAGTACAATAGGACGCAGGAC
GGAGAGCACGTAGCACGCACGCCGCTGTTTCTCTCACCCCCGACGTACTC
ACACGGTGATCGAGCTGACTGTGGTTGTTCTCATTACATTGTGAGAGCTG
AAAGTACCACGTCGGTAAGACTTCTAGTGTCGAGAAGCGACTAATGCAAC
GTAGGACCTTCGGTTCTTCATGGACTCGCAAGGCATCGACCGTGTGGATC
GTCTTCCCTCGTGCTTTACTCAACTGTCTTGGTGCCGGCGGCGGTTTTTT
GTCTCCTCCCGTCAAAAACCTCGTCGGGGTGGTCGGCTGCAGGTCTGCCC
GGACGTTCCCGCGGAGTGCCCGGCGATGGTGGTCTTCTTGATACAGGCCA
GTCACCGCCGAGTCGTGTGCAGCGTGCGAGCATGGCTGCTTTCCATGCAT
GTAGATTCTGAAAGGGTGGGCATGCCAAATCTCATCACCACTGGTGGGGG
GGGGGCATGCTCCCGTTTTTTTTGCGTGTCCGTCCGAAAAAGTGCGTCGT
ACGTGCTTGTCCAGAACCCTCTCAAACCCTCGCGGGAGTGGCCCTACAAC
GTCGTTTGAAGCAGACCTCCGGCCCACCCCTTAATGGACGCAATCATTGC
AGCTATTGACTACGTATGCATCATTTTTTGTGTCGTCGCTGTTGTTGTAG
ACGACGGCCCGTTGGATCGATTTCCGGGAGGAGGGTGAACCTGAATTGAA
TACTTCGGCATTGATCCATCCGTGGATGAACGTCCAGGATGCCGATACAG
ACCTTGGTGTAACTACAGAGAGAACTATCAACACATAAGCAGAAGAACAA
AGGCAATTTCGCCTATGTTCGCGTTTGTGTCTAGTTGCGATTTGAGACTC
CTAGCGTCTTTCCAATGGCCGGCCGGCTAGCGCGGTCTATACCAACAAAA
GAAACGCACGCGCACACGCACGCACGGCGTCGACGTCGCACTACGTATGT
GATCACCACGTCCTTTGCAGATAGGTAGGCTCGCGGAGAGCCTGGATGAC
CGGTGCCGGCGAGAGAAGCTCAACAAGCCAAATGCCGGCCGGCCCAGCGT
GGATCTAGACGAAGCGCTCATGGTAACGATGCCCGTAAGTGCCACCGCCG
CCGTCCCTATATTGTTTGCACGTCCATCCACCCCTCAGCAACAAATATTT
TCCAACAGGTGTCAGCCATCGCCCCCCCGGTTTCGTTTTTTGTCAGAAGC
AGACAGAGAATAGCTTCCACCTCTATCGGTGGACAAAATCTCAAGAAATA
GTGTCATGTTTGTGGTGAACTCGTCGTGTTTGGTTTTCCATTTAACACCC
GTGTGTGTCTTATGCGTCTGTCACCACGCCTACTCCTCGTTACCTGCTTC
CCTCGTATCACCCCACTCCCCATCTCACTTGCAATATAGACAGAATGGTC
TGTGCGCTGCGATTTCTCCTTCGTGCTCCAACCACCCCTGACCACCACAT
TTCATTTCATCCCGCTAAACGACACCCCACCTGTGTTGCTATTTGCGGGA
CAACGACCACGTCGATGCCGTAGGTATGGTCCGCTGAAGAAGAGTATCTC
ATCATGAAGGTCACGCTTAACGCGATCGGCGTCCTGAGACGCTGGATGCG
AAGGTGAACAACAATATAAAAGAGATTGTAAATCAGGACACCAGAAACCG
GAGTGATGCGTGACGGCAGCTAGGAAGGGTCAAAACGCATGTAACGGGTA
GTTGATCCGTTTTACGGGAACAAGTCCCGGACACGTCCGACAGGACCGAC
CTTTCACTGCAAGCCCATGTTACAGTAGTTCCGCACGCACAGCTCAAAAT
ACTGCATCCGCATTACTGACTGACCTGTTAAACACCGGACACGTTTTACA
GGCAAGGGTGTGAATTGGGTAGAGAGTGAACGGCACGTCAGTGCTTGATA
CGCTGTCTTCACGTAGCCCCGGCGATGCCCGCACTTAGCAAGGCAGCCAA
CAACCCCCACTCAGCCACCCATCGAACGGACCCCGCCGTATTCTTATCCC
CTACTTTTGCCCCTTCCGGCGCTGCAAAAGACCGCAACGACGAAGAGCGG
CCGGCGAGACACTCCCGCCGAACCAGCAGCCGGAGAAAAACCGGGCCGCG
AAGGTGAAGACAGCCCGGAAGACCAAACGGCCGACGCTGACGTCAAGCAA
TAACTCGGAGACTGCCAAGGCTCGATTGGCAGCGACGAGCGAGGCGCCTC
CCGCCCTCGATAGCGGCAGCACAAGCAACAACAAGGCCTCCAGGCGAGGC
TCGACGAGGAAGATGCGGGGGTCGGTTTCGTCCCCGTCGGTGACCGTTCG
AAGTCCTGATACTGCGGCGGCGGCCGCGGTCGGCGGTGGTGCTCAGGACA
ACCAAGCGGCGGCGGCGGCGGCGGCTACCAGCGAGGAGGCGCAGCACGAG
TCGCCACGCGCTCGGCAGCGGCTCGAGCAGGCCAAGGCGTTGGACAAAGA
AGTCGAAGCTAGCCGAGAAGAAGGGGGTGGTTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8399:661..4294+

>mRNA_E_fasciculatus_S2_contig8399.16532.1 ID=mRNA_E_fasciculatus_S2_contig8399.16532.1|Name=mRNA_E_fasciculatus_S2_contig8399.16532.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=885bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8399:661..4294+ (Ectocarpus fasciculatus EfasUO2)
ATGGTCCAGATGCGGCCGTACGCGGAGCGGGTGGCGGAGTTCAGGCCCTT
CGCCTGCTCCGACTTCATCATCCCGATGCTCACCAAGCTTTGTCCGCCCG
GAGAGAAAATGGACAGATGGCTCGGCAACGCCAAAGTCCCGGTGGCTGTC
ACGATGCACGACTTCATGCAGGCGGTCAAAGAGGTCTGCCCGGACGTTCC
CGCGGAGTGCCCGGCGATGGTGGTCTTCTTGATACAGGCCAGTAGGCTCG
CGGAGAGCCTGGATGACCGGTGCCGGCGAGAGAAGCTCAACAAGCCAAAT
GCCGGCCGGCCCAGCGTGGATCTAGACGAAGCGCTCATGGTAACGATGCC
CGTATGGTCCGCTGAAGAAGAGTATCTCATCATGAAGGTCACGCTTAACG
CGATCGGCGTCCTGAGACGCTGGATGCGAAGACCGCAACGACGAAGAGCG
GCCGGCGAGACACTCCCGCCGAACCAGCAGCCGGAGAAAAACCGGGCCGC
GAAGGTGAAGACAGCCCGGAAGACCAAACGGCCGACGCTGACGTCAAGCA
ATAACTCGGAGACTGCCAAGGCTCGATTGGCAGCGACGAGCGAGGCGCCT
CCCGCCCTCGATAGCGGCAGCACAAGCAACAACAAGGCCTCCAGGCGAGG
CTCGACGAGGAAGATGCGGGGGTCGGTTTCGTCCCCGTCGGTGACCGTTC
GAAGTCCTGATACTGCGGCGGCGGCCGCGGTCGGCGGTGGTGCTCAGGAC
AACCAAGCGGCGGCGGCGGCGGCGGCTACCAGCGAGGAGGCGCAGCACGA
GTCGCCACGCGCTCGGCAGCGGCTCGAGCAGGCCAAGGCGTTGGACAAAG
AAGTCGAAGCTAGCCGAGAAGAAGGGGGTGGTTAA
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