mRNA_E_fasciculatus_S2_contig8397.16527.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8397.16527.1
Unique NamemRNA_E_fasciculatus_S2_contig8397.16527.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8397.16527.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB4_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.650e-38
Identity = 85/133 (63.91%), Postives = 96/133 (72.18%), Query Frame = 1 
Query:  100 LRAAVRDVSSKNPADMADTDDMRVLVGAILDLPLQSHRSGGWSSLEPDDIWGG-SVLFVDKVALPMAEVAIQLMKVTPDEDEALDNMTMAIKRVRRWAVLEKGGSSNSVFQKEFFGRVIVWAHGQ*NLKNVPG 495
            LRAA R V + +PA +A TD               +HR+GGW SLEPDD+WGG +VLFVDKVALPM EVAI LMKV  D DE LDNM MAIKRVRRWAVLEKGGSSN+VFQKEFF RV +WAHG    +N+ G
Sbjct:  314 LRAASRAVIAFDPAVVAKTD---------------AHRTGGWDSLEPDDVWGGGTVLFVDKVALPMVEVAIGLMKVIID-DEELDNMAMAIKRVRRWAVLEKGGSSNTVFQKEFFRRVFLWAHGA--SQNLEG 428
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BLAST of mRNA_E_fasciculatus_S2_contig8397.16527.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI40_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.020e-16
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:  316 MKVTPDEDEALDNMTMAIKRVRRWAVLEKGGSSNSVFQKEFFGRVIVWAHG 468
            MKV  D DE LDNM MAIKRVRRWAVLEKGGSSN+VFQKEFF RV +WAHG
Sbjct:    1 MKVIID-DEELDNMAMAIKRVRRWAVLEKGGSSNTVFQKEFFRRVFLWAHG 50
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BLAST of mRNA_E_fasciculatus_S2_contig8397.16527.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI2_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 6.330e-16
Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:  100 LRAAVRDVSSKNPADMADTDDMRVLVGAILDLPLQSHRSGGWSSLEPDDIWGGSV 264
            LRAA R V + +PA +A TDDMR+LVGAILDLPLQ+HR+GGW S EPDD+WGG +
Sbjct:  142 LRAASRAVIAFDPAVVAKTDDMRILVGAILDLPLQAHRTGGWDSFEPDDVWGGGL 196
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BLAST of mRNA_E_fasciculatus_S2_contig8397.16527.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N5_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.030e-9
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:  277 KVALPMAEVAIQLMKVTPDEDEALDNMTMAIKRVRRWAVLEKGGSSNSVFQKE 435
            +V LP+ E+AIQ MKV PD+ ++ D  +    RV RWA+LE+GGS N VFQKE
Sbjct:   12 EVVLPLLELAIQQMKVLPDDGDSTDAFSKTRSRVNRWAILERGGSPNQVFQKE 64
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8397.16527.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS3_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 2.700e-5
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 1 
Query:  277 KVALPMAEVAIQLMKVTPDEDEALDNMTMAIKRVRRWAVLEKGGSSNSVFQ 429
            +VALP+ E+AIQ MKV PD+D+  D  + A  RV RWA+LE+G      F+
Sbjct:   12 EVALPLLELAIQQMKVLPDDDDTTDACSKARSRVNRWAILERGDLPTRFFR 62
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8397.16527.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized1.650e-3863.91protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.020e-1682.35protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.330e-1669.09protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.030e-954.72protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.700e-549.02protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8397contigE_fasciculatus_S2_contig8397:308..2120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1002
Hectar predicted targeting categoryother localisation
Exons4
Cds size330
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8397.16527.1prot_E_fasciculatus_S2_contig8397.16527.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8397 836..1976 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842498.1882126-UTR-E_fasciculatus_S2_contig8397:307..8351696842498.1882126-UTR-E_fasciculatus_S2_contig8397:307..835Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8397 308..835 -
1696842498.2421088-UTR-E_fasciculatus_S2_contig8397:1976..21201696842498.2421088-UTR-E_fasciculatus_S2_contig8397:1976..2120Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8397 1977..2120 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842498.2008007-CDS-E_fasciculatus_S2_contig8397:835..8751696842498.2008007-CDS-E_fasciculatus_S2_contig8397:835..875Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8397 836..875 -
1696842498.2108936-CDS-E_fasciculatus_S2_contig8397:1166..13211696842498.2108936-CDS-E_fasciculatus_S2_contig8397:1166..1321Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8397 1167..1321 -
1696842498.2211344-CDS-E_fasciculatus_S2_contig8397:1549..16691696842498.2211344-CDS-E_fasciculatus_S2_contig8397:1549..1669Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8397 1550..1669 -
1696842498.2318034-CDS-E_fasciculatus_S2_contig8397:1961..19761696842498.2318034-CDS-E_fasciculatus_S2_contig8397:1961..1976Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8397 1962..1976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8397.16527.1

>prot_E_fasciculatus_S2_contig8397.16527.1 ID=prot_E_fasciculatus_S2_contig8397.16527.1|Name=mRNA_E_fasciculatus_S2_contig8397.16527.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=110bp
MADTDDMRVLVGAILDLPLQSHRSGGWSSLEPDDIWGGSVLFVDKVALPM
AEVAIQLMKVTPDEDEALDNMTMAIKRVRRWAVLEKGGSSNSVFQKEFFG
RVIVWAHGQ*
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mRNA from alignment at E_fasciculatus_S2_contig8397:308..2120-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8397.16527.1 ID=mRNA_E_fasciculatus_S2_contig8397.16527.1|Name=mRNA_E_fasciculatus_S2_contig8397.16527.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1813bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8397:308..2120- (Ectocarpus fasciculatus EfasUO2)
CAGTGGCACAAGGCCGTCAGGGTGGCCATTTACGGATTACACCCTCTCGG
CTCTGGAGGGGTTATCGGAAGAAGACCGTGACCAGAGCACGGACGGCATC
TGAGGGCAGCGGTCCGGGACGTGTCTTCGAAAAATCCCGCGGACATGGCA
GACACCGACGTGAGTATGTACAGATGTGTCCTGTCACGCGTTGTGGGTCG
TAGACACACTGCAGCTCTTGCACCACCAGCAGCCAACGGCATCCTGCCGA
CCCCCTGCTTCGCCTCTAAACGTACCAACCCAATCGGTGGGTGATGTTTT
TGTTGTTGCGTGGCGTATGTGTGCAGTAGTTACGCGGCAAGTTTCAAAGC
ATGCCCGGAATCGGCGATCCTCGATTATATCACACAATGGCTGATACCCT
TTTTACTTCCTTCGATCCCTCTTCGTATCTATTTATCCCTAACCCACGCA
GGACATGCGCGTCTTAGTCGGAGCCATCCTCGACTTGCCCCTGCAGTCCC
ACAGGTCGGGAGGATGGTCCTCGTTGGAGCCGGACGACATATGGGGGGGG
TCTGTCCTATTCGTTGACAAGGTGAGAACAAATTTGGACTGCCTACTGTA
GCGTGTAGCCGGCGCAGCCACGTCTTAATTTTCGTTTTATCATGACTTGA
AGAGCGGTGCTTATTATGTCTTTGATGCCGCGTACTCCGTTCGGTCGCCC
TGTGTTGCATTCTATGACAAATCACACTCACTCCGTATGCCTCTCGTCTC
TGTGCTGGGGTCGTTTGGTTTTCTTGTTGTCATGGCAACACACGCACAGG
TAGCCCTGCCAATGGCGGAGGTGGCGATCCAGCTCATGAAAGTAACGCCC
GACGAAGATGAGGCGTTGGACAACATGACCATGGCCATCAAGCGGGTCAG
ACGCTGGGCCGTGCTCGAGAAGGGCGGATCATCCAACTCAGTGTTCCAGA
AAGAGTGAGTACAACGTAGGTCCGACGTGTAGGCAACAAGTAGACCACCC
AGGTGTAGTATGGTGAAACGTGTGTGCATGTGTCCGTTGGAGCAAGCTTG
TGTTCCATCACGCCCTTATCATATGGGAGCAAATTTGTCCACACCTTCCC
AGCAGAAAAAGGTGTTTATGTGATAAACATATCTCTCTCACCCTAAAAAC
TAAAAACCCGTGCCTTCCACCGGTGTTGCTTGTCGTGACACCTCCCTCTC
TCTTCTCTTCCACTTGCCCCCTCCGTCTCGCCAACTATCCTGCAGGTTCT
TCGGGCGCGTGATCGTATGGGCGCATGGACAGTAAAACTTGAAAAACGTA
CCCGGCTTTTAGGTAGGGGCAAGCTAAGGCCTCATAGTCGGCCTTTCCGA
TCGACTCGATGGTGATCTGGAGGCAGGATTCCAGCTTCTGGTTTGACCCA
TGATGAGGTATGCCCATCTCCAGAATTGGACTCAGCGGCGCCGGAGCGAC
GGAATCTACTGGGCTGGAAGCCGAAGATGGACGAGCGCGAGGCGTACGAG
CCACAATTCATATATCTTGCGTTTGTTTTGGGTACAGATACTCTTCTTGC
AGCCCGGAGAGGGTCGGTCCGGGGTGTGATACGCCACGAAACGGGGTGTA
GTCTAGACTAAACGCTGTTAGCCTTGTTTTGCCCGCCGAAGTGTCGGCTC
GTCATATGAGATATACCCGGTCCGCAGTAGTGCGGGCGGGCGAACGTACA
GGCGTGCGATCGATAACTTTTCCCATAATCCCATGCCCAAGATGGCGCGT
CGAGGCCGGTCGAGACACGCGCCGTTCCAAAAGGAGAGCTCTCGGCCTTC
CCAAACCGTCCGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8397:308..2120-

>mRNA_E_fasciculatus_S2_contig8397.16527.1 ID=mRNA_E_fasciculatus_S2_contig8397.16527.1|Name=mRNA_E_fasciculatus_S2_contig8397.16527.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=330bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8397:308..2120- (Ectocarpus fasciculatus EfasUO2)
ATGGCAGACACCGACGACATGCGCGTCTTAGTCGGAGCCATCCTCGACTT
GCCCCTGCAGTCCCACAGGTCGGGAGGATGGTCCTCGTTGGAGCCGGACG
ACATATGGGGGGGGTCTGTCCTATTCGTTGACAAGGTAGCCCTGCCAATG
GCGGAGGTGGCGATCCAGCTCATGAAAGTAACGCCCGACGAAGATGAGGC
GTTGGACAACATGACCATGGCCATCAAGCGGGTCAGACGCTGGGCCGTGC
TCGAGAAGGGCGGATCATCCAACTCAGTGTTCCAGAAAGAGTTCTTCGGG
CGCGTGATCGTATGGGCGCATGGACAGTAA
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