mRNA_E_fasciculatus_S2_contig839.16518.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig839.16518.1
Unique NamemRNA_E_fasciculatus_S2_contig839.16518.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig839.16518.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP93_ECTSI)

HSP 1 Score: 709 bits (1831), Expect = 2.400e-253
Identity = 401/515 (77.86%), Postives = 424/515 (82.33%), Query Frame = 1
Query:    1 MPSTSAIDQVCEDGTPTERLVLSEVHVGSSSLHEEAEVVSRYAYLTPTSNGDNADSXXXXXXXXXXXEQTSRRVARHRKRPRHEVAQRCCRPSHEVLTIVHKMATTLGLVGQQVWSAAFLLGDFVLTHDELFAGKQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEPLAIPDDDAG-PRDAGGGDSDVQVESGTFGSGVCSSDGGEARSGSCVAAVRKLDWFTFSEEQGGTDVATCDPLEEDQVREMASPAPPSEADCAGTGDVKSNTHDGRTA----CGPFSWRKGELDGMSPKPGSKRGGLVIVAADVIYDEGLTEALFEALKLLMPEPSLRTRGLGKE-----GSVLKAADNVTTPISHQTTPSAKATPGRLDSAGTTDVPVCAK------NP-GKDAVLYLALEKRFNFSVAELSVAATGYNALLRNVLDVTEQEGAGVEVDGCKQQGLTSAK-AFEGKRLPLSFEQCFRYERSNAMELWEIRRRPASSEFS 1491
            MPSTSA++++CEDGTP ERLVLSEVHVGSS LHEEAEVVSRYAYLTPTS+ DN DS XXXXXXX   EQT  RVARHRKRPRHEVAQRCCRPSHEVLTIVHKMATTLGLVGQQVWSA+FLLGDFVLTH+ELF G QVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLL RNVEANRHLFALEP A  DDDA  PR AGGGDSDVQVESGT  SGV SSDGG ARSG CVAAVRKLDWFTFS+EQ   DV TCD LEEDQ +   SPA PSEADCAG GDV++NT+D RT     CGPFSWRKGELDG+S    SKRGG VIVAADVIYDEGLT+ALF+AL LLMP PSLR RGLGKE       V   ADN T P+ HQTTPS   TP   DSA  T VPV         +P G +AVLYLALEKRFNFSVAELSVAATGY+ALLRNV+DVTE +G G  VDGC QQGL SAK AFEG+RLPLSF+QCFRYERSNAMELWEIRRRP SSE S
Sbjct:    1 MPSTSAMEKICEDGTPAERLVLSEVHVGSSGLHEEAEVVSRYAYLTPTSD-DNEDSGXXXXXXXE--EQTRPRVARHRKRPRHEVAQRCCRPSHEVLTIVHKMATTLGLVGQQVWSASFLLGDFVLTHNELFVGMQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLDRNVEANRHLFALEPSATHDDDAAAPRAAGGGDSDVQVESGTLCSGVRSSDGGRARSGDCVAAVRKLDWFTFSKEQDSLDVTTCDSLEEDQAQ---SPAFPSEADCAGMGDVQNNTNDDRTTGTGTCGPFSWRKGELDGLSLISDSKRGGPVIVAADVIYDEGLTDALFQALTLLMPVPSLRARGLGKEDRNCDSKVSSTADNATKPLPHQTTPSTTPTPSCEDSA-VTYVPVSKPVDDHDCHPLGTNAVLYLALEKRFNFSVAELSVAATGYSALLRNVVDVTENDGVGTGVDGCTQQGLKSAKKAFEGRRLPLSFQQCFRYERSNAMELWEIRRRPVSSEIS 508          
BLAST of mRNA_E_fasciculatus_S2_contig839.16518.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0F3_9PHAE)

HSP 1 Score: 676 bits (1743), Expect = 6.440e-240
Identity = 390/516 (75.58%), Postives = 413/516 (80.04%), Query Frame = 1
Query:    1 MPSTSAIDQVCEDGTPTERLVLSEVHVGSSSLHEEAEVVSRYAYLTPTSNGDNADSXXXXXXXXXXXEQ--TSRRVARHRKRPRHEVAQRCCRPSHEVLTIVHKMATTLGLVGQQVWSAAFLLGDFVLTHDELFAGKQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEPLAIPDDDAGPRDAGGGDSDVQVESGTFGSGVCSSDGGEARSGSCVAAVRKLDWFTFSEEQGGTDVATCDPLEEDQVREMASPAPPSEADCAGTGDVKSNTHDGRTA----CGPFSWRKGELDGMSPKPGSKRGGLVIVAADVIYDEGLTEALFEALKLLMPEPSLRTRGLGKEG-----SVLKAADNVTTPISHQTTPSAKATPGRLDSAGTTDVPVCAK------NP-GKDAVLYLALEKRFNFSVAELSVAATGYNALLRNVLDVTEQEGAGVEVDGCKQQGLTSAK-AFEGKRLPLSFEQCFRYERSNAMELWEIRRRPASSEFS 1491
            MPSTSA++ +CEDGTP ERLVLSEVHVG S+LHEEAEVVSR+AYLTPTS GDN D XXXXXXXXXXX    T  RVARHRKRPRHEVAQRCCRPSHEVLTIVHKMATTLGLVGQQVWSA+FLLGDFVLTHDELFAG QVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEP A+ DDDA PRDAGGG SDVQVE+GT  SGV S DGG  RSG CVAAVRKLDWFTFS+EQ   D+ TC  +EEDQ    +S     EAD AG GDVK+N +D RT     CG FSWR GELDG+S    SKRGGLVIVAADVIYDEGLT+ALFEALKLLMP PSLRTRGLGK+G     S    ADN T  + H TTPS  ATP   D A  TDVPV         +P G DAVLYLALEKRFNFS AELSVAATGYNAL+RNV  VTE+ G G  VD C QQGL SAK  FEG+RLPLSF+QCFRYERSNAMELWEIRRRP S E S
Sbjct:    5 MPSTSAMENICEDGTPAERLVLSEVHVGGSNLHEEAEVVSRFAYLTPTS-GDNEDXXXXXXXXXXXXXXXXTRPRVARHRKRPRHEVAQRCCRPSHEVLTIVHKMATTLGLVGQQVWSASFLLGDFVLTHDELFAGMQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEPSAVLDDDAAPRDAGGGYSDVQVENGTLCSGVRSRDGGGPRSGDCVAAVRKLDWFTFSKEQDPPDLTTC--VEEDQRHAFSS-----EADIAGMGDVKNNPNDDRTTGTGTCGRFSWRDGELDGLSNISDSKRGGLVIVAADVIYDEGLTDALFEALKLLMPVPSLRTRGLGKDGRNCNGSNSSTADNATKTLPHHTTPSTTATPSCEDLA-VTDVPVSKPVDDHECHPLGTDAVLYLALEKRFNFSAAELSVAATGYNALMRNVEIVTEENGVGTGVDDCTQQGLQSAKKGFEGRRLPLSFQQCFRYERSNAMELWEIRRRPESREIS 511          
BLAST of mRNA_E_fasciculatus_S2_contig839.16518.1 vs.
Match: Uncharacterized (protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LAN9_9EUKA)

HSP 1 Score: 111 bits (278), Expect = 9.620e-24
Identity = 51/92 (55.43%), Postives = 65/92 (70.65%), Query Frame = 1
Query:  283 EVLTIVHKMATTLGLVGQQVWSAAFLLGDFVLTHDELFAGKQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEP 558
            EVLTIVH M T++  VG QVW  A LLGDF+L + ELF    +++LG G G  GLIA+R+A++CYLTD+ +EVLK   RNV  N HLF  +P
Sbjct:   56 EVLTIVHHMDTSIHYVGLQVWRGALLLGDFILNNQELFKNATIMELGCGSGFSGLIASRIAKKCYLTDFDEEVLKNCQRNVSLNSHLFEKDP 147          
BLAST of mRNA_E_fasciculatus_S2_contig839.16518.1 vs.
Match: Uncharacterized (protein n=2 Tax=Rhododendron TaxID=4346 RepID=A0A834LHT7_RHOSS)

HSP 1 Score: 96.7 bits (239), Expect = 3.520e-18
Identity = 106/405 (26.17%), Postives = 156/405 (38.52%), Query Frame = 1
Query:  268 CRPSHEVLTIVHKMATTLGLVGQQVWSAAFLLGDFVL----THDELFAGKQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEPLAIPDDDAGPRDAGGGDSDVQVESGTFGSGVCSSDGGEARSGSCVAAVRKLDWFTFSEEQGGTDVATCDPLEEDQVREMASPAPPSEADCAGTGDVKSNTHDGRTACGPFSWRKGELDGMSPKPGSKRGGLVIVAADVIYDEGLTEALFEALKLLMPEPSLRTRGLGKEGSVLKAADNVTTPISHQTTPSAKATPGRLDSAGTTDVPVCAKNPGKDAVLYLALEKRFNFSVAELSVAATGYNALLRNVLDVTEQEGAGVEVDGCKQQGLTSAKAFEGKRLPLS-FEQCFR-YERSNAMELWEIR 1464
            C  ++ V+TI HK+ +++  VG QVW A  +L DFVL    T  E F G   ++LGAG G+VG++ ARVA+  +LTD+ +EVL   A NV  N                                    SG+  S+          A VR+LDW    ++   T V     +E  Q +E                               ++W   E++ +           +I+AADVIY + LT+A F+ L+ LM                                   K  P                    + V YLALEKR+NF++ +L+V A GY+     + D  E          C      S   F GKR+ L+   Q  R Y+R N +E+W+I+
Sbjct:  111 CEKNNYVVTIQHKITSSIPSVGLQVWRAELILADFVLHKMVTSSE-FDGIVAIELGAGTGLVGILLARVAKTVFLTDHGEEVLDNCADNVRLN------------------------------------SGIIHSE--------ASAHVRELDW----KDSWPTKV-----VENSQAQER------------------------------YAWTSVEVEELQKAS-------LIIAADVIYSDDLTDAFFKTLERLM-----------------------------------KLRP--------------------EKVAYLALEKRYNFTLDDLNVVANGYSHFRSYLRDEGE----------CNDLKSRSLPCFVGKRIDLADIPQYMREYDRGNDVEIWQIK 359          
BLAST of mRNA_E_fasciculatus_S2_contig839.16518.1 vs.
Match: Methyltransferase (like 22 n=1 Tax=Felis catus TaxID=9685 RepID=M3VWM3_FELCA)

HSP 1 Score: 95.1 bits (235), Expect = 2.150e-17
Identity = 79/256 (30.86%), Postives = 113/256 (44.14%), Query Frame = 1
Query:  283 EVLTIVHKMATTLGLVGQQVWSAAFLLGDFVLTHDELFAGKQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEPLAIPDDDAG---------PRDAGGGDSDVQVESGTFGSGVCSSDGGEARSGSCVAAVRKLDWFTFSEEQGGTDVATCDPLEEDQVREMASPAPPSEADCAGTGDVKSNTHDGRTACGPFSWRKGELDGMSPKPGSKRGGLVIVAADVIYDEGLTEALFEALKLL 1023
            +++ I H MAT L  VG+QVW  A LL D++L   +LF G+ VL+LGAG G+  +IAA VAR  Y TD   ++L +  RN+  N HL A    +  D  +G         P  A GG   +   S  + SG     GG       V  V++LDW          D+ T DP                        +V            PFSW + ++  +           +++AA+V YD+ LT+ALF+ L  L
Sbjct:  149 DIVRIEHTMATPLEDVGKQVWRGALLLADYILFQRDLFQGRTVLELGAGTGLASIIAATVARTVYCTDVGADLLAMCQRNIALNGHLTAAGESSSCDGSSGHPPLTVRADPSRAAGGALPLSGRSSPWASGP---PGG-------VVKVKELDWLR-------DDLCT-DP------------------------EV------------PFSWSQEDVSDLYSHT------TILLAAEVFYDDDLTDALFKTLSRL 344          
BLAST of mRNA_E_fasciculatus_S2_contig839.16518.1 vs.
Match: Methyltransferase (like 22 n=3 Tax=Salmo trutta TaxID=8032 RepID=A0A673ZNW0_SALTR)

HSP 1 Score: 93.6 bits (231), Expect = 7.190e-17
Identity = 77/244 (31.56%), Postives = 104/244 (42.62%), Query Frame = 1
Query:  283 EVLTIVHKMATTLGLVGQQVWSAAFLLGDFVLTHDELFAGKQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEPLAIPDDDAGPRDAGGGDSDVQVESGTFGSGVCSSDGGEARSGSCVAAVRKLDWFTFSEEQGGTDVATCDPLEEDQVREMASPAPPSEADCAGTGDVKSNTHDGRTACGPFSWRKGELDGMSPKPGSKRGGLVIVAADVIYDEGLTEALFEAL 1014
            +V+ I H MAT L  VG+QVW  AFLL D +L+    F G  VL+LGAG G+  ++ A VA+  Y TD  +++L +  +NV  NRHL  +EP                                   GGE R       VR LDW       GG    T      ++   M      S AD + +    S   D   A   F W + E+  +           +I+AADV YD+ LT+ALF  L
Sbjct:  156 DVIRIEHTMATPLEDVGKQVWRGAFLLADLILSQPTTFRGATVLELGAGTGLTSVVMATVAKTVYCTDVGEDLLSMCQKNVTLNRHL--MEPA----------------------------------GGEVR-------VRLLDWLRHDLCTGGQATRTHTHXHFEKHTHMMLNHGLS-ADLSSSSPFISCFSD---ADAEFGWTEDEVADLHDNT------TIIIAADVCYDDDLTDALFRTL 346          
BLAST of mRNA_E_fasciculatus_S2_contig839.16518.1 vs.
Match: Methyltransferase (like 22 n=2 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0DU82_9SAUR)

HSP 1 Score: 92.0 bits (227), Expect = 1.820e-16
Identity = 40/88 (45.45%), Postives = 61/88 (69.32%), Query Frame = 1
Query:  280 HEVLTIVHKMATTLGLVGQQVWSAAFLLGDFVLTHDELFAGKQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHL 543
            ++++ I H MAT L  VG+QVW   FLL D++L+  +LF G+ VL+LGAG G+V +IAA+ A+  Y TD  +++L +  RN+  N+HL
Sbjct:  153 YDIVRIEHTMATPLEDVGKQVWRGGFLLADYILSKQDLFQGRTVLELGAGTGIVSIIAAKAAQTIYCTDIGEDLLDMCERNIALNKHL 240          
BLAST of mRNA_E_fasciculatus_S2_contig839.16518.1 vs.
Match: 4-aminobutyrate (aminotransferase, mitochondrial n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444UBE5_ACIRT)

HSP 1 Score: 93.6 bits (231), Expect = 2.050e-16
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1
Query:  286 VLTIVHKMATTLGLVGQQVWSAAFLLGDFVLTHDELFAGKQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEPLAIP 570
            V+ I H MAT L  VG+QVW  AFL+ DF+L+H +LF G  VL+LGAG GV  ++ A VA+R Y TD   ++L +  RNV  N+H+       +P
Sbjct:   97 VIRIEHTMATPLEDVGKQVWRGAFLMADFILSHRDLFQGCTVLELGAGTGVTSIVMATVAKRVYCTDVGQDLLSMCERNVALNKHILESGGRRLP 191          
BLAST of mRNA_E_fasciculatus_S2_contig839.16518.1 vs.
Match: methyltransferase-like (protein 22 isoform X1 n=3 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F082433)

HSP 1 Score: 91.3 bits (225), Expect = 4.030e-16
Identity = 96/393 (24.43%), Postives = 145/393 (36.90%), Query Frame = 1
Query:  283 EVLTIVHKMATTLGLVGQQVWSAAFLLGDFVLTHDELFAGKQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANRHLFALEPLAIPDDDAGPRDAGGGDSDVQVESGTFGSGVCSSDGGEARSGSCVAAVRKLDWFTFSEEQGGTDVATCDPLEEDQVREMASPAPPSEADCAGTGDVKSNTHDGRTACGPFSWRKGELDGMSPKPGSKRGGLVIVAADVIYDEGLTEALFEALKLLMPEPSLRTRGLGKEGSVLKAADNVTTPISHQTTPSAKATPGRLDSAGTTDVPVCAKNPGKDAVLYLALEKRFNFSVAELSVAATGYNALLRNVLDVTEQEGAGVEVDGCKQQGLTSAKAFEGKRLPLSFEQCFRYERSNAMELWEI 1461
            +V+ I H MAT L  VG+QVW AAFLL D +L+    F G  VL+LG+G G+  ++ A +A+  Y TD  D++L +  RN+  N+HL  LEP                                   GG+ R       VR+LDW          D+ T                                  DG T    F W + E+  +            I+AADV YD+ LT+  F+                    +V +  DN      HQ                                +Y+A+EKR NF++  + V+   Y+     + ++ E  G           G TS   F+ +++  +F Q  +YER   +ELW++
Sbjct:  163 DVIKIEHTMATPLEDVGKQVWRAAFLLADLILSEPATFRGTTVLELGSGTGLTSVVMAIMAKTVYCTDIGDDLLSMCQRNMTLNQHL--LEPT----------------------------------GGDMR-------VRELDWLRH-------DLCT----------------------------------DGDTE---FGWTEEEVADLYDNT------TFIIAADVCYDDDLTDGFFK--------------------TVYRLCDNF-----HQA-----------------------------CTVYVAIEKRLNFTLRHMDVSCEAYDHFRHCLSEMQEMMG-----------GRTS---FKVQQVAPAFPQHLQYERIEQLELWKV 394          
BLAST of mRNA_E_fasciculatus_S2_contig839.16518.1 vs.
Match: Methyltransferase (like 22 n=4 Tax=Oryzias TaxID=8089 RepID=A0A3B3C4Y9_ORYME)

HSP 1 Score: 90.9 bits (224), Expect = 5.170e-16
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  286 VLTIVHKMATTLGLVGQQVWSAAFLLGDFVLTHDELFAGKQVLDLGAGPGVVGLIAARVARRCYLTDYHDEVLKLLARNVEANR 537
            VL I H MAT L  VG+QVW  A  LGDF+L+H +LF G  +LDLGAG G+  ++ A  AR  Y TD  ++VL L  RNV  N+
Sbjct:  140 VLKIEHTMATPLEEVGKQVWRGALFLGDFILSHPDLFRGATILDLGAGTGLTSIVMATTARTVYCTDVGEDVLSLCKRNVSLNK 223          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig839.16518.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.400e-25377.86protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.440e-24075.58protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.620e-2455.43protein n=1 Tax=Arcella intermedia TaxID=1963864 R... [more]
Uncharacterized3.520e-1826.17protein n=2 Tax=Rhododendron TaxID=4346 RepID=A0A8... [more]
Methyltransferase2.150e-1730.86like 22 n=1 Tax=Felis catus TaxID=9685 RepID=M3VWM... [more]
Methyltransferase7.190e-1731.56like 22 n=3 Tax=Salmo trutta TaxID=8032 RepID=A0A6... [more]
Methyltransferase1.820e-1645.45like 22 n=2 Tax=Salvator merianae TaxID=96440 RepI... [more]
4-aminobutyrate2.050e-1646.32aminotransferase, mitochondrial n=1 Tax=Acipenser ... [more]
methyltransferase-like4.030e-1624.43protein 22 isoform X1 n=3 Tax=Hypomesus transpacif... [more]
Methyltransferase5.170e-1651.19like 22 n=4 Tax=Oryzias TaxID=8089 RepID=A0A3B3C4Y... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig839contigE_fasciculatus_S2_contig839:1667..4591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start1
Seed ortholog score118.6
Seed ortholog evalue8.2e-24
Seed eggNOG ortholog4113.PGSC0003DMT400014524
Model size1497
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Lysine methyltransferase
EggNOG OGs37RWZ@33090,3GF4K@35493,44GUJ@71274,KOG2497@1,KOG2497@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-08_000300.1
Cds size1497
COG Functional cat.S
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842497.425028-CDS-E_fasciculatus_S2_contig839:1666..20741696842497.425028-CDS-E_fasciculatus_S2_contig839:1666..2074Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig839 1667..2074 +
1696842497.448207-CDS-E_fasciculatus_S2_contig839:2816..29061696842497.448207-CDS-E_fasciculatus_S2_contig839:2816..2906Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig839 2817..2906 +
1696842497.4612179-CDS-E_fasciculatus_S2_contig839:3168..34681696842497.4612179-CDS-E_fasciculatus_S2_contig839:3168..3468Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig839 3169..3468 +
1696842497.4749272-CDS-E_fasciculatus_S2_contig839:3892..45911696842497.4749272-CDS-E_fasciculatus_S2_contig839:3892..4591Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig839 3893..4591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig839.16518.1prot_E_fasciculatus_S2_contig839.16518.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig839 1667..4591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig839.16518.1

>prot_E_fasciculatus_S2_contig839.16518.1 ID=prot_E_fasciculatus_S2_contig839.16518.1|Name=mRNA_E_fasciculatus_S2_contig839.16518.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=499bp
MPSTSAIDQVCEDGTPTERLVLSEVHVGSSSLHEEAEVVSRYAYLTPTSN
GDNADSGSGSDSDSDSEEQTSRRVARHRKRPRHEVAQRCCRPSHEVLTIV
HKMATTLGLVGQQVWSAAFLLGDFVLTHDELFAGKQVLDLGAGPGVVGLI
AARVARRCYLTDYHDEVLKLLARNVEANRHLFALEPLAIPDDDAGPRDAG
GGDSDVQVESGTFGSGVCSSDGGEARSGSCVAAVRKLDWFTFSEEQGGTD
VATCDPLEEDQVREMASPAPPSEADCAGTGDVKSNTHDGRTACGPFSWRK
GELDGMSPKPGSKRGGLVIVAADVIYDEGLTEALFEALKLLMPEPSLRTR
GLGKEGSVLKAADNVTTPISHQTTPSAKATPGRLDSAGTTDVPVCAKNPG
KDAVLYLALEKRFNFSVAELSVAATGYNALLRNVLDVTEQEGAGVEVDGC
KQQGLTSAKAFEGKRLPLSFEQCFRYERSNAMELWEIRRRPASSEFST*
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mRNA from alignment at E_fasciculatus_S2_contig839:1667..4591+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig839.16518.1 ID=mRNA_E_fasciculatus_S2_contig839.16518.1|Name=mRNA_E_fasciculatus_S2_contig839.16518.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2925bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig839:1667..4591+ (Ectocarpus fasciculatus EfasUO2)
ATGCCCTCTACATCAGCGATAGATCAGGTCTGCGAGGATGGCACCCCGAC CGAGCGCCTCGTTTTGTCGGAGGTGCATGTTGGAAGCAGCAGTCTACATG AAGAAGCTGAGGTGGTATCGCGGTACGCCTACCTCACGCCGACATCTAAC GGCGACAACGCGGACAGCGGCAGCGGCAGCGACAGCGACAGCGATAGCGA GGAACAGACAAGCCGCAGGGTCGCGAGGCATCGCAAGCGCCCTCGGCACG AGGTCGCCCAGCGCTGCTGCAGGCCATCTCACGAGGTGCTGACCATTGTG CACAAAATGGCGACTACCTTGGGGTTGGTCGGCCAGCAGGTCTGGTCGGC GGCATTCCTCCTCGGCGACTTCGTGCTGACCCACGACGAGCTGTTCGCGG GAAAGCAGGTACGTTGTGTTTAGCCCTCGTACGCAGTTACTACTATTGTA CATGTAGTTACAGGTGGTAGGCCCAGAAAAAAACTCGTCCGCTCATTGGG AGAATCTGTACAGTCCCGCGGGACAAAGGTTGACTTGGTTGTAGACAGAA AAGTGTCCCGAAATGCGCTGGGGACGCTTTCTTATACCGAACCCAAGTCA GCATGTTTTCCAGTGCTAGGCTATGCAGACTTTTACCAACAAGGGGACAC GCGACTTTAGGAGATATGTATCCAACAAGGCAGAGGCTGAGGAGAGCCAT CACGCCGTATATCGTAAATCACACAACGTACCACCTCACACAATCAATCA TGGTAGGCGAGGTTTCCTACGTGTTTTTTTTCACACAGACAGCGAGGGCT AGTGGCAACTACAGTAGTGCGGCAAACAGGACGTTTGAGTGTTGTGCCCC TAAAGGTTTCCCCATTTGGGGGTCAAGTACTATCAAAATGCGGTAGATGA TAGCTATTGGAATCAAGGCCAACCCGGGGTCACCAACAGCCTGTTGCTGA TGAACTAAACTTTTGTGGACGGGCATGACCAACGACTTTCCGCCGCTACC CCAACCAACGGCTGGGACCACCACCAACAAGCTCTTTCGGTTTCACCATC CTACTCCCATTTGTTTTTCATGTTGTCGTTTGGAAACGTATTGTCTACTC GCCTTACCGTGCTACTCCTACAATATGCTTCTACTTTTTCAATCCTTAAG GTGCTCGACCTTGGCGCTGGTCCGGGGGTAGTCGGGTTGATCGCAGCCCG GGTCGCTCGGAGATGCTATCTGACGGACTACCACGATGAGGTAGGTGTGT TGCCGCTTTTCCGGGCGCTGCGTTAAGAATTTTTTGTATTGGAGCGGTTT TGCCATGTGACGATCGTTGTTGACTGACTGCCGTGACAGACATCATCCAT CGCCAGCACTCCGCGCCCCCAAGTATTACGTTCGAGAAAAACGCAAAGCG TGGGCGTATACCCAGGCTAAATGGCTCGTGTTCGCCTCGGCGTGCTTGTC CATCGCCCCCTTGCTGGTTCGATGCATATGACGTGGACGTGTGGTGGAAT AGGTGCTCAAGCTTCTCGCTCGCAACGTAGAGGCAAACAGACACCTCTTT GCCCTTGAGCCATTGGCAATCCCCGACGACGACGCCGGTCCGAGAGATGC CGGTGGCGGCGACAGCGATGTCCAGGTCGAAAGCGGCACGTTCGGCAGCG GTGTTTGTAGCAGCGATGGAGGAGAAGCTCGGTCAGGGAGTTGTGTGGCG GCAGTGCGGAAGCTGGATTGGTTCACTTTTTCCGAGGAACAGGGTGGTAC GGACGTCGCTACTTGTGATCCCTTGGAGGAGGACCAGGTCAGGGAAATGG CCGTCAGTTGGGGCTAACTTTGGGAGATAAGATGTTGGGTGTGGAGAAGC ACATGTCGTTTGTGAGTCCTTTACATGCGCGCCTGGTGTTCAGAATAATG GCGTGTCTCTCGGCGGTTTCTCGCATTCTTCCCATCGCCTACAGCAGTAC CCCGCAGGGACCCGACCGAAGGCTGTCAGGTGCAGGAGGACCCAACGTGT TTGTCGCTACAGACGGGATCGGGCACACGTCTGCATTGTTGGTTCATCTC GCTTTAAGCGAGGAAGGGTGTTCGGCCACTGCACCACGTCGTCGCTGTCT CATTCGGGTTACAGGGAAAGCGCGATCAATGGGATGTATGCACTTGTATG TACCAGGGCAGATATTGTTTACTCATGGCACCCCCCCCTGCTGTGTCACG GCCGCAAACTCATGTGTTCGGCGCAGAGCCCAGCTCCTCCCAGCGAGGCA GACTGCGCCGGGACGGGAGACGTGAAGAGCAACACCCATGATGGCCGCAC CGCTTGCGGTCCGTTTTCGTGGAGGAAGGGCGAGCTGGACGGGATGTCGC CGAAACCGGGTTCCAAGCGCGGTGGGCTTGTGATTGTTGCTGCTGACGTC ATCTACGACGAGGGCCTGACAGAAGCGCTCTTCGAGGCACTCAAGTTGCT CATGCCGGAGCCGTCCTTGCGTACAAGAGGTCTTGGCAAAGAAGGCAGCG TCTTGAAAGCCGCGGATAACGTCACTACACCAATATCGCATCAGACGACA CCATCAGCCAAAGCCACTCCAGGTCGCCTAGACTCGGCTGGTACTACTGA CGTGCCTGTTTGTGCTAAAAACCCTGGCAAAGATGCAGTGCTCTACCTGG CGCTCGAGAAACGCTTCAATTTTTCCGTAGCGGAGTTGTCGGTAGCAGCA ACGGGGTACAACGCTCTCTTGAGGAATGTGTTGGACGTGACAGAGCAAGA AGGCGCGGGAGTTGAGGTAGACGGCTGTAAACAGCAGGGGCTGACGAGCG CGAAAGCGTTCGAGGGCAAAAGACTCCCCCTGTCTTTCGAGCAGTGTTTT CGGTATGAGCGGAGTAACGCGATGGAGCTGTGGGAGATTCGGCGTAGGCC GGCAAGCAGCGAATTTTCAACGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig839:1667..4591+

>mRNA_E_fasciculatus_S2_contig839.16518.1 ID=mRNA_E_fasciculatus_S2_contig839.16518.1|Name=mRNA_E_fasciculatus_S2_contig839.16518.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1497bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig839:1667..4591+ (Ectocarpus fasciculatus EfasUO2)
ATGCCCTCTACATCAGCGATAGATCAGGTCTGCGAGGATGGCACCCCGAC
CGAGCGCCTCGTTTTGTCGGAGGTGCATGTTGGAAGCAGCAGTCTACATG
AAGAAGCTGAGGTGGTATCGCGGTACGCCTACCTCACGCCGACATCTAAC
GGCGACAACGCGGACAGCGGCAGCGGCAGCGACAGCGACAGCGATAGCGA
GGAACAGACAAGCCGCAGGGTCGCGAGGCATCGCAAGCGCCCTCGGCACG
AGGTCGCCCAGCGCTGCTGCAGGCCATCTCACGAGGTGCTGACCATTGTG
CACAAAATGGCGACTACCTTGGGGTTGGTCGGCCAGCAGGTCTGGTCGGC
GGCATTCCTCCTCGGCGACTTCGTGCTGACCCACGACGAGCTGTTCGCGG
GAAAGCAGGTGCTCGACCTTGGCGCTGGTCCGGGGGTAGTCGGGTTGATC
GCAGCCCGGGTCGCTCGGAGATGCTATCTGACGGACTACCACGATGAGGT
GCTCAAGCTTCTCGCTCGCAACGTAGAGGCAAACAGACACCTCTTTGCCC
TTGAGCCATTGGCAATCCCCGACGACGACGCCGGTCCGAGAGATGCCGGT
GGCGGCGACAGCGATGTCCAGGTCGAAAGCGGCACGTTCGGCAGCGGTGT
TTGTAGCAGCGATGGAGGAGAAGCTCGGTCAGGGAGTTGTGTGGCGGCAG
TGCGGAAGCTGGATTGGTTCACTTTTTCCGAGGAACAGGGTGGTACGGAC
GTCGCTACTTGTGATCCCTTGGAGGAGGACCAGGTCAGGGAAATGGCCAG
CCCAGCTCCTCCCAGCGAGGCAGACTGCGCCGGGACGGGAGACGTGAAGA
GCAACACCCATGATGGCCGCACCGCTTGCGGTCCGTTTTCGTGGAGGAAG
GGCGAGCTGGACGGGATGTCGCCGAAACCGGGTTCCAAGCGCGGTGGGCT
TGTGATTGTTGCTGCTGACGTCATCTACGACGAGGGCCTGACAGAAGCGC
TCTTCGAGGCACTCAAGTTGCTCATGCCGGAGCCGTCCTTGCGTACAAGA
GGTCTTGGCAAAGAAGGCAGCGTCTTGAAAGCCGCGGATAACGTCACTAC
ACCAATATCGCATCAGACGACACCATCAGCCAAAGCCACTCCAGGTCGCC
TAGACTCGGCTGGTACTACTGACGTGCCTGTTTGTGCTAAAAACCCTGGC
AAAGATGCAGTGCTCTACCTGGCGCTCGAGAAACGCTTCAATTTTTCCGT
AGCGGAGTTGTCGGTAGCAGCAACGGGGTACAACGCTCTCTTGAGGAATG
TGTTGGACGTGACAGAGCAAGAAGGCGCGGGAGTTGAGGTAGACGGCTGT
AAACAGCAGGGGCTGACGAGCGCGAAAGCGTTCGAGGGCAAAAGACTCCC
CCTGTCTTTCGAGCAGTGTTTTCGGTATGAGCGGAGTAACGCGATGGAGC
TGTGGGAGATTCGGCGTAGGCCGGCAAGCAGCGAATTTTCAACGTGA
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