mRNA_E_fasciculatus_S2_contig8383.16516.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH1_9PHAE) HSP 1 Score: 278 bits (710), Expect = 1.950e-86 Identity = 173/290 (59.66%), Postives = 179/290 (61.72%), Query Frame = 1
Query: 25 EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEA-----------------------------DGD---------GVGTGVF-----------------------------DGLGVTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGE-------MYGGLLLAHPSVAERELPDLPHASLSAAGASTXXXXXXXXXXXXXXXXXXXXXCDMXXXXXXXXSRRNEREAEVALRHVKCVL 672
EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEA DG G G G DGLG+TMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGE MYGGLLLAHPSVAER+LPDLPHAS S+AG+ST CDM SRRNEREAEV +RHVK +L
Sbjct: 298 EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEAGCLLPSEAVSVPPPRAPPRSPGAHGGNSKDGGXXXXXXXXVGTGWGXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGGDGLGLTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGEVGDRAVCMYGGLLLAHPSVAERKLPDLPHAS-SSAGSSTKEEGVEMWAAVMLLVDTTG--CDMPEEDAGGGSRRNEREAEVVVRHVKGLL 584
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: R3H (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K5_ECTSI) HSP 1 Score: 281 bits (718), Expect = 4.790e-84 Identity = 183/252 (72.62%), Postives = 186/252 (73.81%), Query Frame = 1
Query: 25 EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEA-----------------------------DGDGVGTGVFDGLG-----VTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHASLSAAGASTXXXXXXXXXXXXXXXXXXXXX--CDMXXXXXXXXSRRNEREAEVALRHVKCVL 672
EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEA DG GV +TMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPH S XXXXXXXXXXXXXXXXXXX CDM SRRNEREAEVA+RHVK +L
Sbjct: 393 EARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEAGCLLPSEAVSVPPPHAPARSPGAHGGNSKDGGGVXXXXXXXXXXXXXXLTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHTSAXXXXXXXXXXXXXXXXXXXXXXXXXXDTTGCDMPEEDAGGGSRRNEREAEVAVRHVKGLL 644
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I8_9STRA) HSP 1 Score: 194 bits (492), Expect = 2.920e-53 Identity = 126/223 (56.50%), Postives = 140/223 (62.78%), Query Frame = 1
Query: 4 QLKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEADGDGVGTGVFDGLGVTMFDRVLRDLGHGVCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHASLSAAGASTXXXXXXXXXXXXXXXXXXXXXCDMXXXXXXXXSRRNEREAEVALRHVKCVL 672
QL LRKE R RE VV VLR R VVLATCVGAAT LR+E FDLVVIDEAAQALEAACW+P LKGRRLVLAGDHKQL PT+K A G LGVT+FDR+L G G+ RML+VQYRM+ DIC WAS MY G LL H S A R LP LPH + +A + XX XXXXXXXXS RN EA VA HV+ ++
Sbjct: 370 QLSALRKEIRVREEGVVASVLRKRRVVLATCVGAATRLLRDETFDLVVIDEAAQALEAACWVPALKGRRLVLAGDHKQLPPTIKCDAAARAG----------LGVTLFDRLLAAHGDGIARMLDVQYRMHADICSWASAAMYSGRLLPHASAAARTLPALPHVT-AARDMTAAPLLLLDTAGCDMREDSAGXXXXXXXXXXXXXSHRNPGEAAVAAAHVRALI 581
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: Dna-binding (protein smubp-2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRN4_9STRA) HSP 1 Score: 174 bits (442), Expect = 6.900e-47 Identity = 102/164 (62.20%), Postives = 115/164 (70.12%), Query Frame = 1
Query: 10 KTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEADGDGVGTGVFDGLGVTMFDRVLRDLGHG------VCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDL 483
+ LR+E R RE +VV EV+ SR+VVL TCVGA LREE FDLVVIDEAAQALEAACWIPI +G R+VLAGDHKQLAPTVKS +AEA G LGVT+FDR++R+ G G C ML VQYRM+ DIC WAS MY G L A PSVA R L L
Sbjct: 391 RALRRELRTREARVVGEVVSSREVVLCTCVGAGARVLREERFDLVVIDEAAQALEAACWIPIQRGGRVVLAGDHKQLAPTVKSGRAEALG----------LGVTLFDRLMREDGFGGPAGGRAC-MLQVQYRMHADICAWASRAMYQGRLRADPSVAGRTLAGL 543
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LQ57_9STRA) HSP 1 Score: 167 bits (423), Expect = 1.410e-44 Identity = 105/235 (44.68%), Postives = 136/235 (57.87%), Query Frame = 1
Query: 1 KQLKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREE--------EFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEADGDGVGTGVFDGLGVTMFDRVLRDL---GHGVCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHASLSAAGASTXXXXXXXXXXXXXXXXXXXXXCDMXXXXXXXXSRRNEREAEVALRHVKCVL 672
+++K+LRKE R+RE KVV +VLR +VVLAT VGAA+ L FDLV+IDEAAQALEA+CWI +L+G+R VLAGDHKQL PT+KS E V +GLG T+F+R++ G +ML VQYRM++DI +WAS MY G LL+H SV ER+L DLP + + G T CDM SR NE EA + + HV ++
Sbjct: 86 REMKSLRKEIRSREEKVVGQVLRDSNVVLATNVGAASSVLNRMVDSRGDPIPFDLVIIDEAAQALEASCWISLLRGKRAVLAGDHKQLPPTIKSTVNE---------VKNGLGQTLFERLMTSYEKESSGCSKMLEVQYRMHQDIANWASKAMYHGKLLSHESVKERKLIDLPQVTANTNGGGTSNEGIEHTTLMLIDTTG----CDMHETLNEAGSRYNEGEAGIVISHVNSLI 307
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVU4_9STRA) HSP 1 Score: 166 bits (421), Expect = 1.080e-43 Identity = 99/164 (60.37%), Postives = 113/164 (68.90%), Query Frame = 1
Query: 10 KTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEADGDGVGTGVFDGLGVTMFDRVLRDLGHG------VCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDL 483
+ LR+E R RE +VV EV+ +R+VVL TCVGA LREE FDLVVIDEAAQALEAA WIPI +G R+VLAGDHKQLAPTVKS +AEA LGVT+FDR++R+ G G C ML VQYRM+ DIC WAS MY G L A PSVA R L L
Sbjct: 834 RALRRELRTREARVVGEVVSTREVVLCTCVGAGARVLREERFDLVVIDEAAQALEAANWIPIQRGGRVVLAGDHKQLAPTVKSGRAEALA----------LGVTLFDRLMREDGVGGPAGGRAC-MLQVQYRMHADICAWASRAMYEGRLRADPSVARRTLAGL 986
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YDZ8_9STRA) HSP 1 Score: 155 bits (391), Expect = 4.080e-43 Identity = 94/192 (48.96%), Postives = 119/192 (61.98%), Query Frame = 1
Query: 1 KQLKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEE--------------FDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEADGDGVGTGVFDGLGVTMFDRVLRDLGHG---------VCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHASLSAA 507
+++K+LR+E R RE KVV+E+L S VVLATCVG+A L+ FDLVVIDEAAQALEAACWIP L+G+RLVLAGDHKQL PT++S + + V GL TMF+RV+ G V RML +QYRMN++I DWAS +YGG L H SVA R L L + L+++
Sbjct: 71 REMKSLRQEVRQREEKVVRELLTSAQVVLATCVGSANSILKSFTRGNGDNNNKKDGGFFDLVVIDEAAQALEAACWIPALRGKRLVLAGDHKQLPPTIQSNQHQ---------VAKGLSTTMFERVMSLYGDDDPNVGTAGRVSRMLRIQYRMNQNIADWASQALYGGHLQTHDSVANRTLAQLVGSPLASS 253
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T598_9STRA) HSP 1 Score: 164 bits (414), Expect = 4.380e-43 Identity = 105/233 (45.06%), Postives = 134/233 (57.51%), Query Frame = 1
Query: 1 KQLKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSL------REEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEADGDGVGTGVFDGLGVTMFDRVL---RDLGHGVCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHASLSAAGASTXXXXXXXXXXXXXXXXXXXXXCDMXXXXXXXXSRRNEREAEVALRHVKCVL 672
+++K LRKE RARE VV ++L + DVVLAT VGA + +L R E FDLVVIDEAAQALEA+CWI ILKG+RLVLAGDHKQL PT+KS + V GLG T+F+R++ ++ G + RML QYRMN DI +WAS YGG L++H +V +L DLPH + CDM SR N+ EA+V HV+ +L
Sbjct: 98 REVKILRKELRAREEGVVADLLMNSDVVLATNVGAGSSTLSKYLQKRGEGFDLVVIDEAAQALEASCWISILKGKRLVLAGDHKQLPPTIKSNEVR---------VQRGLGRTLFERIMGSKQEDGKQMSRMLRTQYRMNADIANWASKASYGGNLISHKTVEAHKLSDLPHVTPGVDDVLNFSPLLLIDSAG----------CDMHETVNSAGSRYNDGEAKVVAIHVESLL 311
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: AN1-type (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5R7_9STRA) HSP 1 Score: 163 bits (412), Expect = 1.580e-42 Identity = 93/167 (55.69%), Postives = 114/167 (68.26%), Query Frame = 1
Query: 7 LKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILKGRRLVLAGDHKQLAPTVKSRKAEADGDGVGTGVFDGLGVTMFDRVLRDLG-HGVCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHASLSA 504
LK RKE R RE KVV E+++ DVV AT VGAA+ L++ FDLVVIDEAAQALEAACW+PILK +R VLAGDHKQL PT+KS+ A ADG L +T+FDRV R G V +ML QYRM+ I DW+S MY G L + VA R+L +LPH +++A
Sbjct: 329 LKANRKEVRQREHKVVVELVKHSDVVFATNVGAASKLLKDATFDLVVIDEAAQALEAACWVPILKAKRCVLAGDHKQLPPTIKSKAAAADG----------LELTLFDRVTRLAGTQSVVKMLTTQYRMHARISDWSSRAMYDGALESFEGVATRKLHELPHVTIAA 485
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFF8_9STRA) HSP 1 Score: 155 bits (391), Expect = 6.160e-42 Identity = 89/177 (50.28%), Postives = 116/177 (65.54%), Query Frame = 1
Query: 4 QLKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIDEAAQALEAACWIPILK-----GRRLVLAGDHKQLAPTVKSRKAEADGDGVGTGVFDGLGVTMFDRVLRDLGHG-VCRMLNVQYRMNRDICDWASGEMYGGLLLAHPSVAERELPDLPHASLSAAGAS 516
++++L KEAR RE VV +LR D+VL+TCVGA + L++ +FD+VVIDEAAQ LEAACWIPILK G VLAGDH QL PT+KS +AE G L VT+F+R++RD V R+LN+QYRM+ I DWAS +MY G +++H SVA L D+ +S AS
Sbjct: 192 EMRSLMKEARQRERAVVVNILRKADIVLSTCVGAGSRLLKDLQFDMVVIDEAAQGLEAACWIPILKINSQTGGTCVLAGDHCQLPPTIKSPQAERGG----------LSVTLFERIIRDKRFAAVVRLLNIQYRMHHSISDWASEQMYHGAIISHESVAHHTLRDIIGSSHVQESAS 358 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8383.16516.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8383.16516.1 >prot_E_fasciculatus_S2_contig8383.16516.1 ID=prot_E_fasciculatus_S2_contig8383.16516.1|Name=mRNA_E_fasciculatus_S2_contig8383.16516.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=225bp KQLKTLRKEARAREGKVVQEVLRSRDVVLATCVGAATHSLREEEFDLVVIback to top mRNA from alignment at E_fasciculatus_S2_contig8383:4710..6708- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8383.16516.1 ID=mRNA_E_fasciculatus_S2_contig8383.16516.1|Name=mRNA_E_fasciculatus_S2_contig8383.16516.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1999bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8383:4710..6708- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8383:4710..6708- >mRNA_E_fasciculatus_S2_contig8383.16516.1 ID=mRNA_E_fasciculatus_S2_contig8383.16516.1|Name=mRNA_E_fasciculatus_S2_contig8383.16516.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=675bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8383:4710..6708- (Ectocarpus fasciculatus EfasUO2)back to top |