mRNA_E_fasciculatus_S2_contig8377.16508.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8377.16508.1
Unique NamemRNA_E_fasciculatus_S2_contig8377.16508.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8377.16508.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0R8_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 8.520e-33
Identity = 98/142 (69.01%), Postives = 102/142 (71.83%), Query Frame = 1 
Query:   37 SAWARPSSADGGXXXXXXXXXSGTTGHGGVAAARINAGKSGEIGGRVG------------WAARSPTTAAXXXXXXXXXXXXXXXXXS------VVAGAGGRAKSGAEWVLSKHAGWMVSNSAIAGGCSRAAEGRCNRLGFQ 408
            SAWARPSSADGG         SGTTG GGVAAARINAGKSGE+GGR G            WAAR PT AAXXXXXXXXXXXXXXXXX       VV   GGRAK GAEWVL+KHAG M SN A+AGGCS AA+GRCNRLGFQ
Sbjct:  166 SAWARPSSADGGSGGGSV---SGTTGQGGVAAARINAGKSGEVGGRAGGHCQPGCGGRGGWAAREPTAAAXXXXXXXXXXXXXXXXXXXXXXXXVVVEGGGRAKLGAEWVLAKHAGLMASNGAVAGGCSLAADGRCNRLGFQ 304
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BLAST of mRNA_E_fasciculatus_S2_contig8377.16508.1 vs.
Match: SPX (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG46_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 4.020e-22
Identity = 89/145 (61.38%), Postives = 92/145 (63.45%), Query Frame = 1 
Query:   10 GQRLAIQAASAWARPSSADGGXXXXXXXXXSGTTGHGGVAAARINAGKSGEI------------GGRVGWAARSPTTAAXXXXXXXXXXXXXXXXXSVVAGAGGRAKSGAEWVLSKHAGWMVSNSAIAGGCSRAAEGRCNRLGFQ 408
            G R    AASAWARPSSADGG      XXX             INA K                GGR GWAAR+PT AAXXXXXXXXXXXXXXX  +VV   GGRAK  AEWVLSKHAGWM SN A+AGGCSRA EGRCNRLGFQ
Sbjct:  470 GARGGPTAASAWARPSSADGGSGGGSAXXXXXXXX---XXXXXINAVKXXXXXXXXXXPCQPGCGGRGGWAARAPT-AAXXXXXXXXXXXXXXXAPTVVVEGGGRAKPEAEWVLSKHAGWMASNGAVAGGCSRAGEGRCNRLGFQ 610
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8377.16508.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized8.520e-3369.01protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
SPX4.020e-2261.38domain-containing protein n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8377contigE_fasciculatus_S2_contig8377:3227..3635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score104.4
Seed ortholog evalue4.4e-20
Seed eggNOG ortholog2880.D8LG46
Model size410
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.cellular response to phosphate starvation
EggNOG OGsCOG5036@1,KOG1161@2759
Ec32 ortholog descriptionSPX, N-terminal
Ec32 orthologEc-11_001980.1
Cds size408
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842496.5431554-CDS-E_fasciculatus_S2_contig8377:3226..36341696842496.5431554-CDS-E_fasciculatus_S2_contig8377:3226..3634Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8377 3227..3634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8377.16508.1prot_E_fasciculatus_S2_contig8377.16508.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8377 3227..3634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8377.16508.1

>prot_E_fasciculatus_S2_contig8377.16508.1 ID=prot_E_fasciculatus_S2_contig8377.16508.1|Name=mRNA_E_fasciculatus_S2_contig8377.16508.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=136bp
AYAGQRLAIQAASAWARPSSADGGGGGGGSGSASGTTGHGGVAAARINAG
KSGEIGGRVGWAARSPTTAAAAASAATAGRRAPAPAPSVVAGAGGRAKSG
AEWVLSKHAGWMVSNSAIAGGCSRAAEGRCNRLGFQ
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mRNA from alignment at E_fasciculatus_S2_contig8377:3227..3635+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8377.16508.1 ID=mRNA_E_fasciculatus_S2_contig8377.16508.1|Name=mRNA_E_fasciculatus_S2_contig8377.16508.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=409bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8377:3227..3635+ (Ectocarpus fasciculatus EfasUO2)
GCGTACGCGGGGCAACGATTGGCGATACAGGCAGCGAGCGCGTGGGCGAG
GCCCTCCTCGGCTGATGGCGGCGGCGGCGGCGGCGGCAGCGGTAGCGCGT
CGGGGACTACCGGTCACGGCGGCGTTGCTGCCGCTAGGATAAACGCCGGG
AAGAGCGGCGAGATCGGCGGCAGAGTTGGGTGGGCTGCAAGGTCGCCGAC
GACGGCGGCGGCGGCTGCTTCGGCAGCGACAGCAGGGCGCCGTGCCCCGG
CACCGGCACCGTCGGTGGTTGCGGGGGCTGGGGGCAGGGCCAAGTCCGGG
GCGGAGTGGGTGTTGTCGAAGCACGCAGGCTGGATGGTTTCCAACAGCGC
TATAGCTGGTGGCTGCTCTCGGGCTGCAGAAGGGCGGTGTAACCGGCTCG
GGTTTCAAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8377:3227..3635+

>mRNA_E_fasciculatus_S2_contig8377.16508.1 ID=mRNA_E_fasciculatus_S2_contig8377.16508.1|Name=mRNA_E_fasciculatus_S2_contig8377.16508.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=408bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8377:3227..3635+ (Ectocarpus fasciculatus EfasUO2)
GCGTACGCGGGGCAACGATTGGCGATACAGGCAGCGAGCGCGTGGGCGAG
GCCCTCCTCGGCTGATGGCGGCGGCGGCGGCGGCGGCAGCGGTAGCGCGT
CGGGGACTACCGGTCACGGCGGCGTTGCTGCCGCTAGGATAAACGCCGGG
AAGAGCGGCGAGATCGGCGGCAGAGTTGGGTGGGCTGCAAGGTCGCCGAC
GACGGCGGCGGCGGCTGCTTCGGCAGCGACAGCAGGGCGCCGTGCCCCGG
CACCGGCACCGTCGGTGGTTGCGGGGGCTGGGGGCAGGGCCAAGTCCGGG
GCGGAGTGGGTGTTGTCGAAGCACGCAGGCTGGATGGTTTCCAACAGCGC
TATAGCTGGTGGCTGCTCTCGGGCTGCAGAAGGGCGGTGTAACCGGCTCG
GGTTTCAA
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