mRNA_E_fasciculatus_S2_contig8361.16497.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8361.16497.1
Unique NamemRNA_E_fasciculatus_S2_contig8361.16497.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8361.16497.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I5_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 1.320e-87
Identity = 232/321 (72.27%), Postives = 242/321 (75.39%), Query Frame = 1 
Query:    1 PSRINQ-DQHLDRLGNILRSLRTRPSERVPSSSAAQLTEQVHRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHXXXXXXXXXXXXXXXQEHERFLHVSGSSQSSRXXXXXXXXASQSWQPEVTITTTTPALHSHRCSATVATDGRLADKPESYARKQDAPPRRQRQAEMGVVRRSVAPPTPQLHERVDGADDEDPRFGG--------VDSGFPPSAPS-STVVRPGVAGAEASSCGDGGGAGTAAAAVAGTTKSVRGPSLRERAIRTWWRGLSCGVCFAAGAWAREGHGAFGALLALTAVCAEMMFHEHAP 933
            PS++ + DQHLDRLG+ILRSLR RPS+RV  SSAAQLTEQ  R+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXX                 XXXXXXX                PALHSHRCS T  TDGRLADKPES ARKQDAP RR RQAE+G V RSVAPPTPQ HERV GADD+ PR G          DSGF PSAPS   VVRPGVAGAEA SCGDGGGAGTAAA VA TTKSVRGPSLRERAIRTWWRGLSCG+CFAAGAWAREGHG FGALLAL AVC EM+FHE AP
Sbjct:    5 PSKMQEADQHLDRLGSILRSLRARPSDRVFFSSAAQLTEQARRNENKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------PALHSHRCSGTATTDGRLADKPESDARKQDAPLRRPRQAEVGDVGRSVAPPTPQFHERVSGADDKGPRLGXXXXXXXXXADSGFVPSAPSIKVVVRPGVAGAEAGSCGDGGGAGTAAA-VAETTKSVRGPSLRERAIRTWWRGLSCGICFAAGAWAREGHGTFGALLALAAVCGEMVFHERAP 308
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BLAST of mRNA_E_fasciculatus_S2_contig8361.16497.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L086_9PHAE)

HSP 1 Score: 273 bits (699), Expect = 1.600e-87
Identity = 221/315 (70.16%), Postives = 230/315 (73.02%), Query Frame = 1 
Query:   16 QDQHLDRLGNILRSLRTRPSERVPSSSAAQLTEQVHRHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQHXXXXXXXXXXXXXXXQEHERFLHVSGSSQSSRXXXXXXXXASQSWQPEVTITTTTPALHSHRCSATVATDGRLADKPESYARKQDAPPRRQRQAEMGVVRRSVAPPTPQLHERVDGADDEDPRFGGV--------DSGFPPSAPSSTVV-RPGVAGAEASSCGDGGGAGTAAAAVAGTTKSVRGPSLRERAIRTWWRGLSCGVCFAAGAWAREGHGAFGALLALTAVCAEMMFHEHAP 933
            +DQHLDRLG+ILRSLR RPS+RV SSSAAQL EQ  RH         XXXXXXXXXXXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXX                 XXXXXXX                PALHSHRCS T +T  RLADKPES ARKQDAP RR RQA+MG VRRSVAPPTPQ HERV GADD+ PR G          D  F P APSSTVV RPGV GAEA SCGDGGG GTAA+AVA TTK VRGPSLRERAIRTWWRGLSCG+CFAAGAWAREGHG FGALLAL AVC EM+FHEHAP
Sbjct:   16 RDQHLDRLGSILRSLRARPSDRVFSSSAAQLNEQARRHENNHVHQPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------PALHSHRCSGTTSTADRLADKPESDARKQDAPLRRPRQADMGAVRRSVAPPTPQFHERVGGADDKGPRLGNXXXXXXXXPDGDFVPWAPSSTVVVRPGVVGAEAGSCGDGGGTGTAASAVAETTKRVRGPSLRERAIRTWWRGLSCGICFAAGAWAREGHGTFGALLALAAVCGEMVFHEHAP 314
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8361.16497.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.320e-8772.27protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.600e-8770.16protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8361contigE_fasciculatus_S2_contig8361:5638..6570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size933
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001650.1
Cds size933
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842495.4831176-CDS-E_fasciculatus_S2_contig8361:5637..65701696842495.4831176-CDS-E_fasciculatus_S2_contig8361:5637..6570Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8361 5638..6570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8361.16497.1prot_E_fasciculatus_S2_contig8361.16497.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8361 5638..6570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8361.16497.1

>prot_E_fasciculatus_S2_contig8361.16497.1 ID=prot_E_fasciculatus_S2_contig8361.16497.1|Name=mRNA_E_fasciculatus_S2_contig8361.16497.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=311bp
PSRINQDQHLDRLGNILRSLRTRPSERVPSSSAAQLTEQVHRHENEHEHQ
PEHLHQHHRHRREQQHPQRQQLHQPQPQPQQHQQLHQSQPRPQQHQQQEH
ERFLHVSGSSQSSRSRPSRSRTASQSWQPEVTITTTTPALHSHRCSATVA
TDGRLADKPESYARKQDAPPRRQRQAEMGVVRRSVAPPTPQLHERVDGAD
DEDPRFGGVDSGFPPSAPSSTVVRPGVAGAEASSCGDGGGAGTAAAAVAG
TTKSVRGPSLRERAIRTWWRGLSCGVCFAAGAWAREGHGAFGALLALTAV
CAEMMFHEHAP
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mRNA from alignment at E_fasciculatus_S2_contig8361:5638..6570-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8361.16497.1 ID=mRNA_E_fasciculatus_S2_contig8361.16497.1|Name=mRNA_E_fasciculatus_S2_contig8361.16497.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=933bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8361:5638..6570- (Ectocarpus fasciculatus EfasUO2)
CCCTCCCGCATCAACCAGGATCAGCACTTGGACCGCCTGGGAAACATTCT
ACGTAGCCTTAGGACGCGACCCTCCGAGCGAGTACCCTCTTCCAGCGCTG
CCCAGCTCACTGAACAAGTCCACCGGCATGAGAACGAGCACGAGCATCAG
CCCGAGCACCTGCATCAGCACCATAGGCATCGAAGAGAACAACAGCATCC
ACAGCGTCAGCAGCTGCATCAGCCACAGCCACAGCCTCAGCAGCACCAGC
AGCTTCATCAGTCACAACCGCGGCCTCAGCAGCACCAGCAGCAAGAGCAC
GAGCGGTTCCTGCACGTGTCCGGGTCGTCGCAGTCGTCACGATCACGACC
ATCGCGATCGCGCACGGCGTCGCAATCCTGGCAGCCCGAGGTGACAATCA
CAACGACAACGCCCGCGCTCCACTCTCACCGGTGTTCGGCGACGGTTGCG
ACGGACGGCCGACTCGCCGACAAGCCGGAAAGCTATGCGAGAAAACAGGA
CGCTCCGCCCCGGCGGCAACGGCAAGCGGAGATGGGGGTTGTGCGCCGCA
GCGTAGCGCCGCCGACACCCCAGCTCCACGAGCGCGTGGATGGTGCTGAT
GATGAGGATCCCCGCTTTGGTGGCGTTGATAGCGGCTTCCCTCCTTCGGC
GCCGAGTAGCACAGTAGTCCGACCTGGAGTTGCAGGCGCCGAGGCCAGTA
GTTGCGGGGACGGTGGCGGTGCTGGCACTGCTGCTGCTGCTGTGGCTGGA
ACAACGAAAAGCGTTCGTGGGCCGTCGCTCAGGGAACGGGCGATTCGCAC
GTGGTGGAGAGGCTTGTCTTGCGGCGTTTGTTTCGCGGCCGGGGCGTGGG
CGCGTGAGGGACACGGGGCGTTCGGCGCCCTGTTGGCGTTGACTGCGGTG
TGTGCTGAAATGATGTTCCACGAACACGCCCCT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8361:5638..6570-

>mRNA_E_fasciculatus_S2_contig8361.16497.1 ID=mRNA_E_fasciculatus_S2_contig8361.16497.1|Name=mRNA_E_fasciculatus_S2_contig8361.16497.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=933bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8361:5638..6570- (Ectocarpus fasciculatus EfasUO2)
CCCTCCCGCATCAACCAGGATCAGCACTTGGACCGCCTGGGAAACATTCT
ACGTAGCCTTAGGACGCGACCCTCCGAGCGAGTACCCTCTTCCAGCGCTG
CCCAGCTCACTGAACAAGTCCACCGGCATGAGAACGAGCACGAGCATCAG
CCCGAGCACCTGCATCAGCACCATAGGCATCGAAGAGAACAACAGCATCC
ACAGCGTCAGCAGCTGCATCAGCCACAGCCACAGCCTCAGCAGCACCAGC
AGCTTCATCAGTCACAACCGCGGCCTCAGCAGCACCAGCAGCAAGAGCAC
GAGCGGTTCCTGCACGTGTCCGGGTCGTCGCAGTCGTCACGATCACGACC
ATCGCGATCGCGCACGGCGTCGCAATCCTGGCAGCCCGAGGTGACAATCA
CAACGACAACGCCCGCGCTCCACTCTCACCGGTGTTCGGCGACGGTTGCG
ACGGACGGCCGACTCGCCGACAAGCCGGAAAGCTATGCGAGAAAACAGGA
CGCTCCGCCCCGGCGGCAACGGCAAGCGGAGATGGGGGTTGTGCGCCGCA
GCGTAGCGCCGCCGACACCCCAGCTCCACGAGCGCGTGGATGGTGCTGAT
GATGAGGATCCCCGCTTTGGTGGCGTTGATAGCGGCTTCCCTCCTTCGGC
GCCGAGTAGCACAGTAGTCCGACCTGGAGTTGCAGGCGCCGAGGCCAGTA
GTTGCGGGGACGGTGGCGGTGCTGGCACTGCTGCTGCTGCTGTGGCTGGA
ACAACGAAAAGCGTTCGTGGGCCGTCGCTCAGGGAACGGGCGATTCGCAC
GTGGTGGAGAGGCTTGTCTTGCGGCGTTTGTTTCGCGGCCGGGGCGTGGG
CGCGTGAGGGACACGGGGCGTTCGGCGCCCTGTTGGCGTTGACTGCGGTG
TGTGCTGAAATGATGTTCCACGAACACGCCCCT
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