mRNA_E_fasciculatus_S2_contig836.16494.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig836.16494.1
Unique Name	mRNA_E_fasciculatus_S2_contig836.16494.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig836.16494.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM5_9PHAE)

HSP 1 Score: 713 bits (1841), Expect = 5.040e-251
Identity = 368/407 (90.42%), Postives = 382/407 (93.86%), Query Frame = 1

Query:    4 EVSQPDFDADGTAAISTASEDQRNYRAAYLKKQARRGMKHAAAFLSLGLFLEIGATFWTLAQAIASGVFDEADCGVRALSLYHNDRLPSNCEQLDSSLVWFDEARTVSTFTSCSGLEDPAIDQLCDCAKYDKVSTGCTWVSASSTRDEIEGLCVAVPVIELTADLQEEYGTTYDWLLDSSELEYQDDCTPLSPEGFGDITIALLVVSLSLELVEAYVGYKRWKDPLSVRGLVVVGSVLEGVGLFSIWCLLRFLPGGILETEVSENQYKFLNMMLYGVLVVTFGGTLAEIVYYFSPPGRFPYLSVFGNSLIWLASALTEVLVTAYLVWRLQWWENAEDETADEETWPVLVAAVVGLVVLEVAALLVLWIARVLIARAKSALLTAKDLSLKEPRSGVADGSSGAASHKE 1224
            E SQPDFDADGTAA  T SE +RN+RAA LKKQA RGMKHAAAFLSLGLFLEIGATFWTLAQAIASGVFDEADCGVRALSLYHNDRLPSNCEQLDSS+VWFDE RTVSTFTSCSGLEDP IDQLCDCA+YD+VSTGCTW SASSTRDEIEGLCVAVPVI LT+DLQEEYGTTYDWLLDSSELEYQDDC PLSPEGFGDITIALLVVSLSLELVEAYVGYKRW++PLSVRGLVVV SVLEGVGLFSIWCLLRFLPGGILETEVSENQYKFLN+MLYGVLVVTFGGTLAEIV+YFS PGRF YL V GNSL WLASALTEV+VTAYLVWRLQWWENA DETADEETWPVLVAAV+GLVVLEVAALLVLWIARVLIARA SALLTAKDLSL EP  G+A+G  GAASHKE
Sbjct:    4 ESSQPDFDADGTAATGTVSEGKRNHRAACLKKQAIRGMKHAAAFLSLGLFLEIGATFWTLAQAIASGVFDEADCGVRALSLYHNDRLPSNCEQLDSSVVWFDEDRTVSTFTSCSGLEDPPIDQLCDCARYDRVSTGCTWTSASSTRDEIEGLCVAVPVIALTSDLQEEYGTTYDWLLDSSELEYQDDCRPLSPEGFGDITIALLVVSLSLELVEAYVGYKRWRNPLSVRGLVVVASVLEGVGLFSIWCLLRFLPGGILETEVSENQYKFLNIMLYGVLVVTFGGTLAEIVFYFSAPGRFRYLGVLGNSLTWLASALTEVVVTAYLVWRLQWWENA-DETADEETWPVLVAAVIGLVVLEVAALLVLWIARVLIARATSALLTAKDLSLGEPCRGMANG-GGAASHKE 408

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig836.16494.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig836.16494.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
Uncharacterized	5.040e-251	90.42	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig836	contig	E_fasciculatus_S2_contig836:23405..25933 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	1
Start	1
Model size	2529
Hectar predicted targeting category	signal peptide
Exons	1
Ec32 ortholog description	Hypothetical protein
Ec32 ortholog	Ec-03_000650.1
Cds size	1116

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842495.2061107-UTR-E_fasciculatus_S2_contig836:23404..23518	1696842495.2061107-UTR-E_fasciculatus_S2_contig836:23404..23518	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig836 23405..23518 +
1696842495.2437847-UTR-E_fasciculatus_S2_contig836:24634..25933	1696842495.2437847-UTR-E_fasciculatus_S2_contig836:24634..25933	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig836 24635..25933 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842495.2301598-CDS-E_fasciculatus_S2_contig836:23518..24634	1696842495.2301598-CDS-E_fasciculatus_S2_contig836:23518..24634	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig836 23519..24634 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig836.16494.1	prot_E_fasciculatus_S2_contig836.16494.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig836 23519..24634 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig836:23405..25933+
coding sequence from alignment at E_fasciculatus_S2_contig836:23405..25933+

protein sequence of mRNA_E_fasciculatus_S2_contig836.16494.1

>prot_E_fasciculatus_S2_contig836.16494.1 ID=prot_E_fasciculatus_S2_contig836.16494.1|Name=mRNA_E_fasciculatus_S2_contig836.16494.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=372bp
MKHAAAFLSLGLFLEIGATFWTLAQAIASGVFDEADCGVRALSLYHNDRL
PSNCEQLDSSLVWFDEARTVSTFTSCSGLEDPAIDQLCDCAKYDKVSTGC
TWVSASSTRDEIEGLCVAVPVIELTADLQEEYGTTYDWLLDSSELEYQDD
CTPLSPEGFGDITIALLVVSLSLELVEAYVGYKRWKDPLSVRGLVVVGSV
LEGVGLFSIWCLLRFLPGGILETEVSENQYKFLNMMLYGVLVVTFGGTLA
EIVYYFSPPGRFPYLSVFGNSLIWLASALTEVLVTAYLVWRLQWWENAED
ETADEETWPVLVAAVVGLVVLEVAALLVLWIARVLIARAKSALLTAKDLS
LKEPRSGVADGSSGAASHKET*

mRNA from alignment at E_fasciculatus_S2_contig836:23405..25933+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig836.16494.1 ID=mRNA_E_fasciculatus_S2_contig836.16494.1|Name=mRNA_E_fasciculatus_S2_contig836.16494.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2529bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig836:23405..25933+ (Ectocarpus fasciculatus EfasUO2)
TCGGAAGTATCCCAGCCTGACTTCGACGCAGATGGCACCGCTGCGATCAG
CACCGCCTCCGAGGACCAGCGAAATTATCGTGCTGCTTATCTCAAGAAGC
AAGCCAGAAGGGGGATGAAGCACGCGGCGGCGTTCCTGTCTCTGGGATTG
TTCTTGGAGATAGGAGCGACCTTTTGGACCTTGGCGCAGGCGATAGCGTC
TGGGGTCTTCGACGAAGCGGACTGCGGGGTGCGAGCCCTTTCTCTGTACC
ACAACGACCGATTGCCTTCAAACTGCGAACAGCTGGATAGCTCGCTGGTT
TGGTTCGACGAAGCCCGAACTGTGAGCACATTCACCAGCTGCAGTGGCCT
CGAGGACCCGGCCATCGACCAGCTGTGCGATTGCGCCAAGTACGACAAGG
TTAGCACCGGTTGCACATGGGTGTCCGCAAGCTCGACCCGTGACGAGATC
GAAGGCCTGTGCGTCGCCGTCCCCGTGATAGAGCTGACCGCGGACCTGCA
GGAAGAGTACGGTACCACGTACGATTGGCTCCTGGACAGCTCCGAGCTCG
AGTACCAAGACGACTGCACGCCGCTGAGCCCGGAAGGTTTCGGAGACATC
ACGATAGCGTTGCTTGTGGTTTCGCTGAGCCTCGAGCTCGTGGAGGCGTA
CGTGGGCTACAAGCGTTGGAAAGATCCGCTGTCCGTGAGAGGCCTGGTTG
TCGTCGGGTCGGTGCTAGAGGGCGTGGGTCTTTTCTCCATCTGGTGCCTT
CTGCGGTTCTTGCCGGGCGGCATTCTCGAGACGGAGGTTAGCGAGAACCA
GTACAAGTTCTTGAACATGATGCTGTACGGCGTTCTTGTGGTGACCTTCG
GGGGCACGCTGGCCGAGATCGTGTACTACTTCTCCCCCCCCGGCCGGTTC
CCCTACCTCAGCGTGTTCGGGAACTCGTTGATATGGCTTGCTTCGGCGCT
GACCGAGGTGCTGGTGACGGCCTACCTTGTCTGGAGGCTGCAGTGGTGGG
AGAACGCGGAGGATGAGACAGCGGACGAGGAGACGTGGCCTGTCTTGGTG
GCTGCCGTGGTCGGTCTGGTCGTCCTAGAGGTTGCGGCCCTGCTGGTGTT
GTGGATTGCTCGCGTGCTGATCGCGAGGGCCAAGTCGGCGCTCTTGACAG
CCAAAGACCTGAGCTTGAAAGAGCCGCGCAGCGGAGTGGCCGACGGCAGC
AGTGGCGCTGCAAGCCATAAGGAGACCTAACGGGTAGGGAACGGGCTAAA
TAGCTTCAAATAAGGCCGGGCAGGCGCACTTGCTTGTCTGATGAGAAGCC
ATGGGAATCTAGGATCGTTGAATTGTACTGTGGTACGGTACTCTTCTTGT
AGAAAGGTGTTTCGTTCGGTCTAGGGGGACATTTGCATACGTAGGAGTGG
ATGGTTTTGTATGGCGTGTTTAGTTCCATCCGGGTGGGCACTTGCATATC
ATAGTGGATGGGTATGTACGCCTGTAGGAACAAAAAGGCCTTGGGTCAAG
GGTTTGGCCTTCTTGCGAGGCCCGCCGGATCTGGAAATGTGATGTGCATG
TCGTTTTCTTGCCTTTTGTCGCGAACAACCATTCTTTGTAGCGCCGTCCG
GTGTTGTCTTCGTAGACACTGCTGGTGTGTTGATTGTGCGTGGGTATGTG
TGTGTTTCTTATAAGCATCGACCGCGCTAACCGGCTGACCAACGAAAATA
CGTCAGTCTCAGTGTGGTTTGACCCACACAATGCTTCTGACGGCCATCTG
GGACCCCGTGAGGGAGGGGGGGAGTTGTAAGGCTGATAACCGTTTGTGTC
AGGCACGCTTAGGAGACGGATGCAGCGCGTGTGAACTGTTTTCGCCGAAA
ACGTGGTGAAATTCTTGTCACACGGGATGGCGGAGGCTGGGAGGGCTCGG
GTACGCACGTGGGCAGAGATTGTTAGTCTTAACTGCTCCATACGGATGTG
ATGTGTCGGCATTCCGAAGTGTGCAAGCCTCAGGAGCTTTCTCAAGAGAT
TTCTGCGATACCTTGTTCTTGCTCTCGCTCTGTTTATTGGGGTTTTTGCA
ACGAACGGGAACAGACAAGAGGTGTTTTGGTTTTGCAGTACAGAAAACAA
GAGAACGGAGGCGGGTCTAGAATGACTGGGGAGGGGGCTCTGCAGGCGAG
AAAGGGTTCCGTGTCTGGGCGCACGAACTCGCCAGACTCGCCGGCAGAGG
TACACCCTTTGGGGATGATTGCATTGCGTCACGTAGTGGATAGTGACGGT
ATTATATTTCGTTCGGGGTTTGGTTGATCTTGTTTCGGGAGAAACGCGTT
GTGTGGCGCTTTCTGGTGTTTTCGTTTTCGTGGTGTTTCGTTTCATGTAC
AATTGTAGTGTCCGCATTTCGTATCTACTCAGTATTAGACTAGGAGCGCG
CGTTCCCTGATAGACCTTGAGGAGAGGACGGCTGAACCCTTCGCTTCGTA
TAGAAAAACAGTTAGTGGAACCGGGAATGCCCTGTTGAGGGTTCTGTTTT
GGAGTTATCCCAAGTCGGAGCTCTTTTTT

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig836:23405..25933+

>mRNA_E_fasciculatus_S2_contig836.16494.1 ID=mRNA_E_fasciculatus_S2_contig836.16494.1|Name=mRNA_E_fasciculatus_S2_contig836.16494.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1116bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig836:23405..25933+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGCACGCGGCGGCGTTCCTGTCTCTGGGATTGTTCTTGGAGATAGG
AGCGACCTTTTGGACCTTGGCGCAGGCGATAGCGTCTGGGGTCTTCGACG
AAGCGGACTGCGGGGTGCGAGCCCTTTCTCTGTACCACAACGACCGATTG
CCTTCAAACTGCGAACAGCTGGATAGCTCGCTGGTTTGGTTCGACGAAGC
CCGAACTGTGAGCACATTCACCAGCTGCAGTGGCCTCGAGGACCCGGCCA
TCGACCAGCTGTGCGATTGCGCCAAGTACGACAAGGTTAGCACCGGTTGC
ACATGGGTGTCCGCAAGCTCGACCCGTGACGAGATCGAAGGCCTGTGCGT
CGCCGTCCCCGTGATAGAGCTGACCGCGGACCTGCAGGAAGAGTACGGTA
CCACGTACGATTGGCTCCTGGACAGCTCCGAGCTCGAGTACCAAGACGAC
TGCACGCCGCTGAGCCCGGAAGGTTTCGGAGACATCACGATAGCGTTGCT
TGTGGTTTCGCTGAGCCTCGAGCTCGTGGAGGCGTACGTGGGCTACAAGC
GTTGGAAAGATCCGCTGTCCGTGAGAGGCCTGGTTGTCGTCGGGTCGGTG
CTAGAGGGCGTGGGTCTTTTCTCCATCTGGTGCCTTCTGCGGTTCTTGCC
GGGCGGCATTCTCGAGACGGAGGTTAGCGAGAACCAGTACAAGTTCTTGA
ACATGATGCTGTACGGCGTTCTTGTGGTGACCTTCGGGGGCACGCTGGCC
GAGATCGTGTACTACTTCTCCCCCCCCGGCCGGTTCCCCTACCTCAGCGT
GTTCGGGAACTCGTTGATATGGCTTGCTTCGGCGCTGACCGAGGTGCTGG
TGACGGCCTACCTTGTCTGGAGGCTGCAGTGGTGGGAGAACGCGGAGGAT
GAGACAGCGGACGAGGAGACGTGGCCTGTCTTGGTGGCTGCCGTGGTCGG
TCTGGTCGTCCTAGAGGTTGCGGCCCTGCTGGTGTTGTGGATTGCTCGCG
TGCTGATCGCGAGGGCCAAGTCGGCGCTCTTGACAGCCAAAGACCTGAGC
TTGAAAGAGCCGCGCAGCGGAGTGGCCGACGGCAGCAGTGGCGCTGCAAG
CCATAAGGAGACCTAA