mRNA_E_fasciculatus_S2_contig8356.16492.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8356.16492.1
Unique NamemRNA_E_fasciculatus_S2_contig8356.16492.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8356.16492.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG7_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 3.060e-36
Identity = 106/128 (82.81%), Postives = 107/128 (83.59%), Query Frame = 1 
Query:    1 IKPDEAKQLVTLIETAGRELLALQKAVAETDGTPPTAATAAATAG-LPYTNGLSGYGFGHGATAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEAERHRDVFRLCAALEVTSVLLCTLSMGLSQ 381
            IKPDEAKQLVTL+ETAGRELLALQK VAE DG PPTA  A A  G L YTNGLSGYGFGHGATAAG  XXXXXXXXXXXXXXXXXXXXX        EAERHRDVFRLCAALEVTSVLLCTLSM LSQ
Sbjct:  280 IKPDEAKQLVTLVETAGRELLALQKTVAEADGIPPTATPATAGGGGLHYTNGLSGYGFGHGATAAGATXXXXXXXXXXXXXXXXXXXXXD-------EAERHRDVFRLCAALEVTSVLLCTLSMALSQ 400
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BLAST of mRNA_E_fasciculatus_S2_contig8356.16492.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8I6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.450e-31
Identity = 92/119 (77.31%), Postives = 95/119 (79.83%), Query Frame = 1 
Query:   28 VTLIETAGRELLALQKAVAETDGTPPTAATAAATAG-LPYTNGLSGYGFGHGATAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGEAERHRDVFRLCAALEVTSVLLCTLSMGLSQ 381
            VTL+ETAGRELLALQK VA+TDG PPTA  A A  G + YTNGLSG GFGHGATAAG  XXXXXXXXXXXXXXXXXX         G E ERHRDVFRLCAALEVTSVLLCTLSM LSQ
Sbjct:    9 VTLVETAGRELLALQKTVADTDGIPPTATPATAGGGGVHYTNGLSGCGFGHGATAAGATXXXXXXXXXXXXXXXXXX---------GDETERHRDVFRLCAALEVTSVLLCTLSMALSQ 118
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8356.16492.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.060e-3682.81protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.450e-3177.31protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8356contigE_fasciculatus_S2_contig8356:5798..6178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score140.2
Seed ortholog evalue6.7e-31
Seed eggNOG ortholog2880.D7FNG7
Model size381
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2CAJ9@1,2SW6E@2759
Cds size381
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842494.9290524-CDS-E_fasciculatus_S2_contig8356:5797..61781696842494.9290524-CDS-E_fasciculatus_S2_contig8356:5797..6178Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8356 5798..6178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8356.16492.1prot_E_fasciculatus_S2_contig8356.16492.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8356 5798..6178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8356.16492.1

>prot_E_fasciculatus_S2_contig8356.16492.1 ID=prot_E_fasciculatus_S2_contig8356.16492.1|Name=mRNA_E_fasciculatus_S2_contig8356.16492.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=127bp
IKPDEAKQLVTLIETAGRELLALQKAVAETDGTPPTAATAAATAGLPYTN
GLSGYGFGHGATAAGATGAAAGVTGSFGAFGGGGGGGGGGGGAAGGEAER
HRDVFRLCAALEVTSVLLCTLSMGLSQ
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mRNA from alignment at E_fasciculatus_S2_contig8356:5798..6178+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8356.16492.1 ID=mRNA_E_fasciculatus_S2_contig8356.16492.1|Name=mRNA_E_fasciculatus_S2_contig8356.16492.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=381bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8356:5798..6178+ (Ectocarpus fasciculatus EfasUO2)
ATTAAGCCGGACGAGGCGAAGCAGCTAGTGACCCTCATCGAGACCGCGGG
CCGGGAGCTCCTTGCCCTCCAGAAGGCCGTCGCCGAGACCGACGGCACTC
CACCCACCGCCGCCACCGCCGCCGCCACCGCCGGGCTCCCGTACACAAAC
GGCCTCTCCGGCTACGGTTTCGGCCATGGGGCTACCGCTGCCGGTGCTAC
CGGCGCCGCCGCCGGCGTAACGGGTTCTTTCGGCGCCTTTGGCGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGGGCAGCGGGCGGGGAGGCCGAGCGG
CATCGGGACGTGTTCCGTCTTTGCGCCGCGCTTGAGGTCACGTCCGTTCT
TCTGTGCACCCTGTCCATGGGGCTAAGTCAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8356:5798..6178+

>mRNA_E_fasciculatus_S2_contig8356.16492.1 ID=mRNA_E_fasciculatus_S2_contig8356.16492.1|Name=mRNA_E_fasciculatus_S2_contig8356.16492.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=381bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8356:5798..6178+ (Ectocarpus fasciculatus EfasUO2)
ATTAAGCCGGACGAGGCGAAGCAGCTAGTGACCCTCATCGAGACCGCGGG
CCGGGAGCTCCTTGCCCTCCAGAAGGCCGTCGCCGAGACCGACGGCACTC
CACCCACCGCCGCCACCGCCGCCGCCACCGCCGGGCTCCCGTACACAAAC
GGCCTCTCCGGCTACGGTTTCGGCCATGGGGCTACCGCTGCCGGTGCTAC
CGGCGCCGCCGCCGGCGTAACGGGTTCTTTCGGCGCCTTTGGCGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGGGCAGCGGGCGGGGAGGCCGAGCGG
CATCGGGACGTGTTCCGTCTTTGCGCCGCGCTTGAGGTCACGTCCGTTCT
TCTGTGCACCCTGTCCATGGGGCTAAGTCAG
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