mRNA_E_fasciculatus_S2_contig8356.16491.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8356.16491.1
Unique Name	mRNA_E_fasciculatus_S2_contig8356.16491.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8356.16491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG7_ECTSI)

HSP 1 Score: 427 bits (1099), Expect = 5.220e-143
Identity = 246/267 (92.13%), Postives = 251/267 (94.01%), Query Frame = 1

Query:   58 QAMLQEFLRSRDGNEMIGDLSEGLEARRDDLICPDPSRCHPRTPEDRAALQSGTVVVKGFRAKLPPQAVSELVVMSDELDINEVVCVELWSQVNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRNLLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLGPEGIRRTTPPSSTAATVGSSQQPGAQTGLFGAAPAA-AAPXXXXXXXXXXXXXXXX---EGAAERREEFMLDSLVCAVEVLFFIYY 846
            QAMLQEFLRSR+GNEMIGDLSEGLEARRDDLICPDPSRCHPRTPEDRAALQSG+VVVKGFRAKLPPQAVSELV +SDELDINEVVCV+LWSQVNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRNLLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLGPEGIRRTT PSSTAA +GSSQ  GA TGLFGAAPAA AAP      XXXXXXXXXX   EGAAERREEFMLDSLVCAVEVLFFIYY
Sbjct:   11 QAMLQEFLRSREGNEMIGDLSEGLEARRDDLICPDPSRCHPRTPEDRAALQSGSVVVKGFRAKLPPQAVSELVALSDELDINEVVCVDLWSQVNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRNLLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLGPEGIRRTTSPSSTAAMLGSSQA-GAPTGLFGAAPAATAAPAPGQAGXXXXXXXXXXSMSEGAAERREEFMLDSLVCAVEVLFFIYY 276

[Close]

BLAST of mRNA_E_fasciculatus_S2_contig8356.16491.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W6_9PHAE)

HSP 1 Score: 394 bits (1011), Expect = 5.680e-136
Identity = 236/280 (84.29%), Postives = 240/280 (85.71%), Query Frame = 1

Query:    7 QSQDAVGLDHNVSLTDLQAMLQEFLRSRDGNEMIGDLSEGLEARRDDLICPDPSRCHPRTPEDRAALQSGTVVVKGFRAKLPPQAVSELVVMSDELDINEVVCVELWSQVNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRNLLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLGPEGIRRTTPPSSTAATVGSSQQPGAQTGLFGAAPAAAAPXXXXXXXXXXXXXXXXEGAAERREEFMLDSLVCAVEVLFFIYY 846
            +SQDAVGLDH+VSLTDLQAMLQEFLRSRDGNEMIGDLSEGLEARRDDLICPDPSRCHPRTPEDR ALQSG+VVVKGFRAK                             VNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRNLLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLGPEGIRRTTPP+STAATVGSSQ  GA TGLFGAAPA      XXXXXXXXXXXXX EGAAERREEFMLDSLVCAVEVLFFIYY
Sbjct:    2 ESQDAVGLDHDVSLTDLQAMLQEFLRSRDGNEMIGDLSEGLEARRDDLICPDPSRCHPRTPEDRTALQSGSVVVKGFRAK-----------------------------VNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRNLLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLGPEGIRRTTPPTSTAATVGSSQA-GAPTGLFGAAPA------XXXXXXXXXXXXXSEGAAERREEFMLDSLVCAVEVLFFIYY 245

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8356.16491.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8356.16491.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	5.220e-143	92.13	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	5.680e-136	84.29	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8356	contig	E_fasciculatus_S2_contig8356:1039..5327 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	431.4
Seed ortholog evalue	3.2e-118
Seed eggNOG ortholog	2880.D7FNG7
Model size	848
Hectar predicted targeting category	other localisation
Exons	6
EggNOG OGs	2CAJ9@1,2SW6E@2759
Cds size	846
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8356.16491.1	prot_E_fasciculatus_S2_contig8356.16491.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8356 1039..5327 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842494.8455513-CDS-E_fasciculatus_S2_contig8356:1038..1098	1696842494.8455513-CDS-E_fasciculatus_S2_contig8356:1038..1098	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8356 1039..1098 +
1696842494.8579657-CDS-E_fasciculatus_S2_contig8356:2148..2334	1696842494.8579657-CDS-E_fasciculatus_S2_contig8356:2148..2334	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8356 2149..2334 +
1696842494.8681104-CDS-E_fasciculatus_S2_contig8356:2749..2836	1696842494.8681104-CDS-E_fasciculatus_S2_contig8356:2749..2836	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8356 2750..2836 +
1696842494.8785264-CDS-E_fasciculatus_S2_contig8356:3511..3658	1696842494.8785264-CDS-E_fasciculatus_S2_contig8356:3511..3658	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8356 3512..3658 +
1696842494.890833-CDS-E_fasciculatus_S2_contig8356:4326..4509	1696842494.890833-CDS-E_fasciculatus_S2_contig8356:4326..4509	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8356 4327..4509 +
1696842494.9006474-CDS-E_fasciculatus_S2_contig8356:5144..5327	1696842494.9006474-CDS-E_fasciculatus_S2_contig8356:5144..5327	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8356 5145..5327 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8356:1039..5327+
coding sequence from alignment at E_fasciculatus_S2_contig8356:1039..5327+

protein sequence of mRNA_E_fasciculatus_S2_contig8356.16491.1

>prot_E_fasciculatus_S2_contig8356.16491.1 ID=prot_E_fasciculatus_S2_contig8356.16491.1|Name=mRNA_E_fasciculatus_S2_contig8356.16491.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=282bp
MEQSQDAVGLDHNVSLTDLQAMLQEFLRSRDGNEMIGDLSEGLEARRDDL
ICPDPSRCHPRTPEDRAALQSGTVVVKGFRAKLPPQAVSELVVMSDELDI
NEVVCVELWSQVNEPWQRRALEKRLSDPAGSLSEDLPLAARKLFYLERRN
LLMFEAELFKAALVEDLSPAKKAVIDREIFSLLEKDLASNLMSFVAKLLG
PEGIRRTTPPSSTAATVGSSQQPGAQTGLFGAAPAAAAPAPGQAGGAAAG
AGGVSEGAAERREEFMLDSLVCAVEVLFFIYY

mRNA from alignment at E_fasciculatus_S2_contig8356:1039..5327+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8356.16491.1 ID=mRNA_E_fasciculatus_S2_contig8356.16491.1|Name=mRNA_E_fasciculatus_S2_contig8356.16491.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4289bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8356:1039..5327+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGCAGAGCCAGGATGCCGTGGGCCTCGACCACAACGTCTCACTCAC
GGACCTTCAGGTGCACTCGTGTATGTGGTTGTGCGTGTACGTCGTTGCTA
TCGCAGCAGTTTTTTTTCGTTTTTGGTCGTTGGCGGAATTTGGCCATGGC
ATGGTTTGTTTCATGGACGCGGTCTGTCCTACACCCGCGGTGCTGCTCGC
AAGAGGCGGGCACCTCGGTTGCTGTGTAAGTACTCCTGGAATTGCTACGT
GGATACGACCCCCGTAGTCAGCGCTCCTTCCGCCCGTATATCCTCGTACG
TTTGCACGGCTCCAGACATAATTGTTGGTGTCAAATGTAAGGGCGGCGAA
TACTATTTAGTGTACAATTTGTAGTACCCGATGGTCTGCAACGGCAGGCA
GTGCGGGCGCTACTACTGCTGTAGACTACATGACGAGCATTTACAGCAGT
AGGCCTGCTCTTAATCTACGGTATGTAGAGAACACCGCTCCGACTCTCAG
ATATACCCACACAACATGTTTCATGTCTGAAATGATACCTGCGCGTGCCC
CAGGCTGTCAACCATCTGTGGCCTGCGTTTTTTGCTTTTTTGCTGCGATC
CTCATCTTTCCCGCAAAAGCCGTGCTTACAGCTTACAGCATCATGCTAAA
TTTGCGAGAGGAATGCATCTACATTACCGCAATAGGTGCGCGCGGAGGTA
CCCTCTGTGTCCGACACCATTCGAGTAGGTTACGGACACAACACTACTCC
GCTGGCGTTGGTTCTCTTTGTCGTTACGCAGCAGCGAGAATCAGGGCGGG
TCTCTCCCGCTGCAGACAGCATTGTTGGTGCTCAAAAAAAGTCTCAGACT
GCGTTGTCTACAATTGGGCGATGTGCTTATACCGCCGTTTGACATGCACA
CCCCAATACATGCTTGTGCCCGCACAGCCCCACACACACGTTCGAGGGTT
ACCTTCGTCTTGGTCTTTGAACTTTGCCCAAGCCCCTTTACCGTCCGCCT
CGTCCTATTTTCTAAACCTTAACCTTCCCCACCCCCGCTCTTTCGCAACA
ACACTGCATGTGTCTACCGCTGCAAAAAATCCGCACTAAATAAATACCAA
TGTTTTTCAGGCAATGCTTCAGGAGTTCCTCCGATCAAGAGACGGCAACG
AGATGATCGGAGATCTCTCGGAGGGACTAGAGGCCCGTCGGGATGACCTC
ATCTGCCCGGACCCGTCCCGGTGCCACCCCAGGACGCCAGAGGACCGAGC
GGCCCTGCAGAGTGGAACCGTGGTGGTAAAGGGCTTCCGCGCGAAGGTAT
GTGAGGCTACTATTATACAGCGCGGACGGTCGGGTGTGTTGGGTGGTGGC
ATGTGCAACGGCATCAACAGGAGTTAGTACATGGGCTGCAGGCGTTTTGT
TGGCGTGGTTTGGCAGTAGTCCCGTTAACTTTTAAATATGTGCAGATGGG
ATTTTTAGCTCGATCCCAAAGTTTCCCAGCCCACTCTTGCTCCTTGGTTC
TCGTGTTGGTCCTGTGCTCTTTCTAGCGCCGACAAGCACAACCGTACCCA
CGTCATCTGTAAAGTTTTGGTTTTGACAAGAAAGGAGATGAAAAGCGGTC
TCGGATCGTGTCCCCCCTGTGCCGGCACATGTGTGTATGTTTCACTTACT
GGCATATCGTGCTCCCCGTGCCGCCTTTGGTATGCTGCTGGCGTTGTGGA
TACGAACCAAGCTTCCACCGCAAGCGGTGTCGGAACTCGTGGTGATGTCT
GACGAGCTGGACATCAACGAGGTGGTGTGCGTGGAGCTGTGGTCACAGGT
GAAGGCGGCGTGATTTCTTGTCTCGCCTGAAACTACAGCATAGGTTGTAC
GCACGCATGGATCTACAACAGCGACAAGTGTTTGTGTTACGGGAGTGAAA
AGTCAACGAGTGTTCTTGCCTTTCTTCATAGAGACTTGAAAGTATCGTGG
AAACAGAGAGGGCGTGTGTAGTGCTACTTATCTATCTCTTTTGGCCGCAG
GTGCAAGCAATTCCCCCCGCCCCCCCGCATCTCTCGCCCCTTGCCACGGC
GTGCTGGTGTGTTAGCACATATCCGCCTGGCTGCATGGCTGCGGCAAGAG
TGACTGCAAGGGCAGGAGGGCGACGAGAGTTATCCTTATCCTTCACCCGT
GTGCTTGTAAGAGCAACCGGCTTGTGCTTGTTGGTGTCACGGACCGCATG
ATGTTAATCTGGGGGCTTGGCAGACGTCGAGTATGTGACAACAACGCGTT
GCCGTCTCTGTTCTCTCTCTTTCTCCGTCTCTCTCTCTCTGTCCTTCCGT
CCGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTCCGTCC
GTCCGTCCGTCCGTCCGTCCGTCCGTCCGTCTGTCTGTCTGTCTTTGCTT
CTCTCTCTTTTTCCGTCTCTGTCTCTCTCTCCTTCTCTTTCTCTGTCTGC
CTATCGGTCTGTGTGTGTATTAGGTGAATGAGCCTTGGCAGAGGCGGGCG
CTGGAGAAAAGGCTGTCCGACCCGGCGGGAAGCCTGAGCGAGGACCTTCC
GCTGGCCGCTAGGAAGCTCTTCTATCTGGAACGCCGCAACCTGCTCATGT
TCGAAGCGGAGCTGTTCAAGGTGATAGTTTATGACGTACTTCATAACAAA
ATTGGATTTGGAAGGATCTACGGCGAACGGTGAACAGTCGGGGGGTTCTC
CGCTGTGTGCTACGCTTATATGTTGAAAGTGTGTACGTGACCCACAGCAC
CATCGATACATAGTTTTCGTGATTTGCAGGTATTCCAACAGTAGCCCGGT
CAAGTATTTAGGGACGAGGAGCTCCGCGAGGTAGTCTGTAGCGGCTTTTT
GCGTGGCTGGTTTCGTGCTAAGGAGGAGCCTCGAACGCACTAAGCCGACC
TGGCAGCACTTGCTTTTTCCGCGATATCTATAAAAAGCGAAAGTCACTAT
TATAGTACCTTTACCCCCTACTGTGTGCTAGCTATTTTGTTGTTTTCGCG
TTCGGTACTATCGCTGATGTTGTTGACAACACCATGTCGTCGGCACGGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCAGCAGCTGCTGTGTTCTCTGT
CGGGGGAGGCGACAAGGCTGCCCTAATAGTGCAATACCACTCCCTGCCGC
TGGTAAAAAGAGAGAGGTGTGATGGGAGCTAGCAGTGTTGCTCGTTTTCT
CGTTGCCATTCAATTATTGTATTTCGTTTCCCCGACGTCTCGTTGTTGTT
GTTGTTGTTACGGATTGCCGTTCTGTTCTTTCTGCAAGGCGGCACTGGTG
GAAGACCTGTCTCCGGCCAAGAAGGCCGTGATCGACCGCGAGATCTTTTC
CCTCCTGGAGAAGGACCTAGCTTCCAACCTCATGAGCTTCGTCGCCAAGC
TCTTGGGCCCCGAGGGGATTCGCCGAACCACGCCCCCTTCCTCAACGGCA
GCGACGGTCGGCAGCTCTCAGGTACATGTGCAGGAGTCGTGTCCCGCTTT
AAGGACACACCATGAGACGGGGGGAGTGTTGTTTGTGTTGCCCCGGTCTC
TGCTCTTCTCTCCCCTTCTTGCCGAGCAAAGGAGGGGGGGGGGTACGCAG
AAATTCATCCAAACTTTGAAAGCTTAGGAGCAGACCATGTTTTTCCAGGA
ACCTGGTGCTCCGCAGACTGTAAGAACCAGGGTGTGTGTGTATGATTGTA
CAGACACTTTTGTGAAGGAAAACTGTGAAAAATTTCGGAGGCGGGGGCGA
CTGCTGTAGTTGGAGAAGAAGGTGCTCAGGAGGGGCGGGGGAGTGAAGCG
CGCACACACCCTTTTGACAGGCACCCAAGTGAAATGTCACGACAGTACGG
CGGTGCTGAGCCCAGGGCTCATGGTGGTTGGACAAGAGGCCGCCTTTATC
GGGGGGCGCTTGTACGGGTGGTGTGCGGAGTACCTCAGGATACGATAGGT
GTCGCAAATCTTGCGGCACATAGTTCTGTGTCAACTTAGCTTCTCATGAT
GTCGGGCAGGAGCACAGGCAGCACTTTGGACGAACGTGTGTTCTTTTCCT
CGTTTTCTCGTGTAAACACCCTCTTGCCTTTTTTGCGCTCTTCCTCTCCC
ACGCAGCAGCCGGGTGCCCAAACGGGACTCTTCGGTGCAGCCCCGGCGGC
GGCAGCACCGGCGCCTGGGCAGGCTGGTGGAGCGGCGGCGGGGGCGGGTG
GCGTGTCGGAAGGGGCGGCGGAGCGGCGGGAGGAGTTCATGCTGGACTCG
CTAGTCTGCGCGGTGGAAGTCCTGTTCTTCATCTACTAC

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8356:1039..5327+

>mRNA_E_fasciculatus_S2_contig8356.16491.1 ID=mRNA_E_fasciculatus_S2_contig8356.16491.1|Name=mRNA_E_fasciculatus_S2_contig8356.16491.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=846bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8356:1039..5327+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGCAGAGCCAGGATGCCGTGGGCCTCGACCACAACGTCTCACTCAC
GGACCTTCAGGCAATGCTTCAGGAGTTCCTCCGATCAAGAGACGGCAACG
AGATGATCGGAGATCTCTCGGAGGGACTAGAGGCCCGTCGGGATGACCTC
ATCTGCCCGGACCCGTCCCGGTGCCACCCCAGGACGCCAGAGGACCGAGC
GGCCCTGCAGAGTGGAACCGTGGTGGTAAAGGGCTTCCGCGCGAAGCTTC
CACCGCAAGCGGTGTCGGAACTCGTGGTGATGTCTGACGAGCTGGACATC
AACGAGGTGGTGTGCGTGGAGCTGTGGTCACAGGTGAATGAGCCTTGGCA
GAGGCGGGCGCTGGAGAAAAGGCTGTCCGACCCGGCGGGAAGCCTGAGCG
AGGACCTTCCGCTGGCCGCTAGGAAGCTCTTCTATCTGGAACGCCGCAAC
CTGCTCATGTTCGAAGCGGAGCTGTTCAAGGCGGCACTGGTGGAAGACCT
GTCTCCGGCCAAGAAGGCCGTGATCGACCGCGAGATCTTTTCCCTCCTGG
AGAAGGACCTAGCTTCCAACCTCATGAGCTTCGTCGCCAAGCTCTTGGGC
CCCGAGGGGATTCGCCGAACCACGCCCCCTTCCTCAACGGCAGCGACGGT
CGGCAGCTCTCAGCAGCCGGGTGCCCAAACGGGACTCTTCGGTGCAGCCC
CGGCGGCGGCAGCACCGGCGCCTGGGCAGGCTGGTGGAGCGGCGGCGGGG
GCGGGTGGCGTGTCGGAAGGGGCGGCGGAGCGGCGGGAGGAGTTCATGCT
GGACTCGCTAGTCTGCGCGGTGGAAGTCCTGTTCTTCATCTACTAC