mRNA_E_fasciculatus_S2_contig8353.16488.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8353.16488.1
Unique NamemRNA_E_fasciculatus_S2_contig8353.16488.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8353.16488.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKV9_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 3.780e-26
Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = -1 
Query:  184 QALKAVDLRFGDNAPYIPLGHPPNRARRHKGDFGWTRGGMLSALEEFYVIGTFVPIAPEVRV 369
            +AL+AV  RFGD+APYIPLGHPP+RARRHKG++GWT   ML ALEEFYVIGTFVPIAPE+ V
Sbjct:   43 KALRAVGRRFGDHAPYIPLGHPPDRARRHKGNYGWTLRKMLWALEEFYVIGTFVPIAPEIAV 104
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8353.16488.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.780e-2677.42protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8353contigE_fasciculatus_S2_contig8353:5641..6188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size515
Hectar predicted targeting categoryother localisation
Exons2
Cds size513
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842494.6107023-CDS-E_fasciculatus_S2_contig8353:5640..57131696842494.6107023-CDS-E_fasciculatus_S2_contig8353:5640..5713Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8353 5641..5713 +
1696842494.6276262-CDS-E_fasciculatus_S2_contig8353:5748..61881696842494.6276262-CDS-E_fasciculatus_S2_contig8353:5748..6188Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8353 5749..6188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8353.16488.1prot_E_fasciculatus_S2_contig8353.16488.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8353 5641..6188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8353.16488.1

>prot_E_fasciculatus_S2_contig8353.16488.1 ID=prot_E_fasciculatus_S2_contig8353.16488.1|Name=mRNA_E_fasciculatus_S2_contig8353.16488.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=171bp
WTLHSIICVLRPNKTAVVQADCGAGGCTNGAVKTWHLFCVYIQSAAKKSR
YSSGRTSKDDFNPYLWSDWDKGANNVELLQSGKHAPPCPSKISLVPSRSV
WRVSERNVRSIIAKPEINSLQGLSRQHSCVRGGVDLGGDSSTCRVDHGFQ
AAIQCRPWHKVAVCPYDAIHH
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mRNA from alignment at E_fasciculatus_S2_contig8353:5641..6188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8353.16488.1 ID=mRNA_E_fasciculatus_S2_contig8353.16488.1|Name=mRNA_E_fasciculatus_S2_contig8353.16488.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=548bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8353:5641..6188+ (Ectocarpus fasciculatus EfasUO2)
TGGACACTACACTCAATAATCTGTGTGTTGAGACCAAACAAAACAGCAGT
TGTGCAGGCGGATTGTGGGGCAGGTGGGTGCACGAATGGGGCCGTCAAGA
CTTGGCAGGTGGGTGCACGAATGGGGCGGTCAAGACTTGGCACCTCTTCT
GTGTATATATACAAAGTGCTGCGAAAAAATCAAGGTACAGCAGCGGGAGA
ACATCCAAGGACGACTTCAACCCTTACCTCTGGAGCGATTGGGACAAAGG
TGCCAATAACGTAGAACTCCTCCAGAGCGGAAAGCATGCCCCCCCGTGTC
CATCCAAAATCTCCCTTGTGCCTTCTCGCTCGGTTTGGAGGGTGTCCGAG
AGGAATGTAAGGAGCATTATCGCCAAACCTGAGATCAACAGCCTTCAGGG
CCTGTCGCGTCAACATAGCTGCGTCCGTGGGGGTGTTGACTTGGGTGGCG
ACTCTTCTACGTGTAGGGTCGACCACGGGTTCCAGGCCGCCATCCAGTGT
AGGCCTTGGCACAAAGTTGCGGTGTGCCCCTACGACGCGATCCACCAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8353:5641..6188+

>mRNA_E_fasciculatus_S2_contig8353.16488.1 ID=mRNA_E_fasciculatus_S2_contig8353.16488.1|Name=mRNA_E_fasciculatus_S2_contig8353.16488.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=513bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8353:5641..6188+ (Ectocarpus fasciculatus EfasUO2)
TGGACACTACACTCAATAATCTGTGTGTTGAGACCAAACAAAACAGCAGT
TGTGCAGGCGGATTGTGGGGCAGGTGGGTGCACGAATGGGGCGGTCAAGA
CTTGGCACCTCTTCTGTGTATATATACAAAGTGCTGCGAAAAAATCAAGG
TACAGCAGCGGGAGAACATCCAAGGACGACTTCAACCCTTACCTCTGGAG
CGATTGGGACAAAGGTGCCAATAACGTAGAACTCCTCCAGAGCGGAAAGC
ATGCCCCCCCGTGTCCATCCAAAATCTCCCTTGTGCCTTCTCGCTCGGTT
TGGAGGGTGTCCGAGAGGAATGTAAGGAGCATTATCGCCAAACCTGAGAT
CAACAGCCTTCAGGGCCTGTCGCGTCAACATAGCTGCGTCCGTGGGGGTG
TTGACTTGGGTGGCGACTCTTCTACGTGTAGGGTCGACCACGGGTTCCAG
GCCGCCATCCAGTGTAGGCCTTGGCACAAAGTTGCGGTGTGCCCCTACGA
CGCGATCCACCAT
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