mRNA_E_fasciculatus_S2_contig8353.16487.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8353.16487.1
Unique NamemRNA_E_fasciculatus_S2_contig8353.16487.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8353.16487.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8353contigE_fasciculatus_S2_contig8353:4744..5312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size318
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842494.5609596-CDS-E_fasciculatus_S2_contig8353:4743..49861696842494.5609596-CDS-E_fasciculatus_S2_contig8353:4743..4986Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8353 4744..4986 -
1696842494.5725327-CDS-E_fasciculatus_S2_contig8353:5237..52941696842494.5725327-CDS-E_fasciculatus_S2_contig8353:5237..5294Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8353 5238..5294 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842494.5833485-UTR-E_fasciculatus_S2_contig8353:5294..53121696842494.5833485-UTR-E_fasciculatus_S2_contig8353:5294..5312Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8353 5295..5312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8353.16487.1prot_E_fasciculatus_S2_contig8353.16487.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8353 4744..5294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8353.16487.1

>prot_E_fasciculatus_S2_contig8353.16487.1 ID=prot_E_fasciculatus_S2_contig8353.16487.1|Name=mRNA_E_fasciculatus_S2_contig8353.16487.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=100bp
MCPTCKSNEFTTARKQWAYMRAVHDVSGTNLFAQARKYGCFNPQCKAVRD
GVVKSMKNRNCTPEELPRVGDGRGGKRVITEGELDKLRRGDLRGMASVLS
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mRNA from alignment at E_fasciculatus_S2_contig8353:4744..5312-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8353.16487.1 ID=mRNA_E_fasciculatus_S2_contig8353.16487.1|Name=mRNA_E_fasciculatus_S2_contig8353.16487.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=569bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8353:4744..5312- (Ectocarpus fasciculatus EfasUO2)
GTGACAGGCGTGCGGCTCATGTGCCCGACCTGCAAAAGCAACGAGTTCAC
CACGGCACGAAAGCAGTGGGCTTATGTGAGTTCTTTTACTGGATGATGCA
TGTGGTTGACTGCTGGTGCACACATGTGGTGTCGATACGGAGGCGTGGAA
CGCCTACTTGTTCCCTGCCTGTCACCCGGCGTTTTGTGAAAAATGTTCAT
CCTATTATAGGCGATTTAAGAACATTTCTCCTGCGCGAGAGAGACCTAGG
CTTGAGACACCTAAGTAGCCCATTGTTTCTGTCCCCTGCCTCGCCCTGCG
GTGTGTATTGCTCTCTTTTCGAACAGATGCGAGCGGTGCACGATGTATCG
GGTACGAACTTGTTCGCGCAAGCCCGGAAGTACGGTTGCTTCAACCCCCA
GTGTAAGGCAGTTCGGGATGGGGTAGTCAAGTCTATGAAGAACCGGAATT
GCACACCCGAAGAACTACCTAGAGTTGGAGATGGGCGCGGTGGGAAGCGA
GTGATTACCGAGGGGGAGCTGGATAAGCTGCGAAGAGGAGACCTGCGGGG
CATGGCATCTGTGTTGTCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8353:4744..5312-

>mRNA_E_fasciculatus_S2_contig8353.16487.1 ID=mRNA_E_fasciculatus_S2_contig8353.16487.1|Name=mRNA_E_fasciculatus_S2_contig8353.16487.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=300bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8353:4744..5312- (Ectocarpus fasciculatus EfasUO2)
ATGTGCCCGACCTGCAAAAGCAACGAGTTCACCACGGCACGAAAGCAGTG
GGCTTATATGCGAGCGGTGCACGATGTATCGGGTACGAACTTGTTCGCGC
AAGCCCGGAAGTACGGTTGCTTCAACCCCCAGTGTAAGGCAGTTCGGGAT
GGGGTAGTCAAGTCTATGAAGAACCGGAATTGCACACCCGAAGAACTACC
TAGAGTTGGAGATGGGCGCGGTGGGAAGCGAGTGATTACCGAGGGGGAGC
TGGATAAGCTGCGAAGAGGAGACCTGCGGGGCATGGCATCTGTGTTGTCA
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