mRNA_E_fasciculatus_S2_contig835.16484.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig835.16484.1
Unique NamemRNA_E_fasciculatus_S2_contig835.16484.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig835.16484.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W6_ECTSI)

HSP 1 Score: 575 bits (1481), Expect = 3.160e-201
Identity = 301/325 (92.62%), Postives = 312/325 (96.00%), Query Frame = 3 
Query:   45 MRDLRNQLRAAVVFCAAGPVASFLPSFSPARARAGPVGAPCSRGVEPRRSPSRAPVGCTQLEATAERPEGHALQEGQNEKASSSSSADTPPAVAQASPVVDRSSAEGGEEGSGLAQNVAAVAKETDAAASVGQSAEEEEVMAELLAHQSGGQDEEQEVETAPKPTKRVTKRLKKYFPKDFQDTTWTVAVQWNHSKYEVKTTKVALKADGQVVWLDKGKGSWILRTKSRDISIYRNFFLNWAGMRIYSAKLLNNTCDMYLSGVIKGWQPFLPLSKMGTWQAVRRGITLDESTPRPPWESREVVKEVTMPDGRKRKNTPIEIEVDLE 1019
            MRDLRN+LRAAVVFCAAGPVASFLP FSPARARAG VGAPCSRGVEPRRSPSRAPVG TQLEATAERPEGHALQEGQ EKASSS+S DTPPA A ASPVVDRSSAEGGEE +GLAQNVAAVAKETDA ASVGQSAEEEEVMAELLAHQ GGQDE QEV+ A KP+KRVTKRLKKYFPKDFQDTTWTVA+QWNHSKYEVKTTKVALKADG+VVWLDKGKGSWILRTKSRDISIYRNFFLNWAGMRI+SAKLLNNTCDMYLSGVIKGWQPFLPLSKMGTWQAVRRGITLDE+TPRPPWESREVVKEVTMPDGRKRKNTPIEI+VDL+
Sbjct:    1 MRDLRNRLRAAVVFCAAGPVASFLPLFSPARARAGLVGAPCSRGVEPRRSPSRAPVGSTQLEATAERPEGHALQEGQEEKASSSASVDTPPAAAPASPVVDRSSAEGGEEKAGLAQNVAAVAKETDATASVGQSAEEEEVMAELLAHQPGGQDEAQEVDAALKPSKRVTKRLKKYFPKDFQDTTWTVAIQWNHSKYEVKTTKVALKADGEVVWLDKGKGSWILRTKSRDISIYRNFFLNWAGMRIFSAKLLNNTCDMYLSGVIKGWQPFLPLSKMGTWQAVRRGITLDENTPRPPWESREVVKEVTMPDGRKRKNTPIEIDVDLD 325
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BLAST of mRNA_E_fasciculatus_S2_contig835.16484.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQD3_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.370e-36
Identity = 72/149 (48.32%), Postives = 103/149 (69.13%), Query Frame = 3 
Query:  528 PKPTKRVTKRLKKYFPKDFQDTTWTVAVQWNHSKYEVKTTKVALKADGQVVWLDKGKGSWILRTKSRDISIYRNFFLNWAGMRIYSAKLLNNTCDMYLSGVIKGWQPFLPLSKMGTWQAVRRGITLDESTPRPPWESREVVKEVTMPDG 974
            P+P ++V +R+KK+F +DF ++TW VA+ W  ++ + + TKV L+ DG+VVWLDKGKGSW L TKSR +  YR+FFL W G RI+S +LL+N  + YL G +KGW P+ PL  MG WQA+R G+ L++  P P W  RE  + +   +G
Sbjct:  165 PEPERKV-RRVKKFFARDFANSTWAVAILWG-ARRKPQMTKVFLRDDGKVVWLDKGKGSWRLDTKSRSLGFYRDFFLGWKGKRIFSTRLLDNCNEHYLEGEVKGWGPWFPLKWMGQWQAIRLGVDLEKHGPAP-WLQREAPEGMEAVEG 310
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig835.16484.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.160e-20192.62protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W6... [more]
Uncharacterized1.370e-3648.32protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig835contigE_fasciculatus_S2_contig835:11738..16417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score586.3
Seed ortholog evalue9e-165
Seed eggNOG ortholog2880.D7G6W6
Model size1849
Hectar predicted targeting categorychloroplast
Exons6
EggNOG OGs2CZXD@1,2SC0X@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_011980.1
Cds size978
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig835.16484.1prot_E_fasciculatus_S2_contig835.16484.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig835 12565..16373 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842494.1938353-UTR-E_fasciculatus_S2_contig835:11737..125641696842494.1938353-UTR-E_fasciculatus_S2_contig835:11737..12564Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig835 11738..12564 -
1696842494.2787335-UTR-E_fasciculatus_S2_contig835:16373..164171696842494.2787335-UTR-E_fasciculatus_S2_contig835:16373..16417Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig835 16374..16417 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842494.2113984-CDS-E_fasciculatus_S2_contig835:12564..126941696842494.2113984-CDS-E_fasciculatus_S2_contig835:12564..12694Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig835 12565..12694 -
1696842494.222021-CDS-E_fasciculatus_S2_contig835:13407..136491696842494.222021-CDS-E_fasciculatus_S2_contig835:13407..13649Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig835 13408..13649 -
1696842494.233728-CDS-E_fasciculatus_S2_contig835:14006..141171696842494.233728-CDS-E_fasciculatus_S2_contig835:14006..14117Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig835 14007..14117 -
1696842494.2453494-CDS-E_fasciculatus_S2_contig835:14482..148471696842494.2453494-CDS-E_fasciculatus_S2_contig835:14482..14847Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig835 14483..14847 -
1696842494.2572775-CDS-E_fasciculatus_S2_contig835:15270..153481696842494.2572775-CDS-E_fasciculatus_S2_contig835:15270..15348Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig835 15271..15348 -
1696842494.2685595-CDS-E_fasciculatus_S2_contig835:16321..163731696842494.2685595-CDS-E_fasciculatus_S2_contig835:16321..16373Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig835 16322..16373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig835.16484.1

>prot_E_fasciculatus_S2_contig835.16484.1 ID=prot_E_fasciculatus_S2_contig835.16484.1|Name=mRNA_E_fasciculatus_S2_contig835.16484.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=326bp
MRDLRNQLRAAVVFCAAGPVASFLPSFSPARARAGPVGAPCSRGVEPRRS
PSRAPVGCTQLEATAERPEGHALQEGQNEKASSSSSADTPPAVAQASPVV
DRSSAEGGEEGSGLAQNVAAVAKETDAAASVGQSAEEEEVMAELLAHQSG
GQDEEQEVETAPKPTKRVTKRLKKYFPKDFQDTTWTVAVQWNHSKYEVKT
TKVALKADGQVVWLDKGKGSWILRTKSRDISIYRNFFLNWAGMRIYSAKL
LNNTCDMYLSGVIKGWQPFLPLSKMGTWQAVRRGITLDESTPRPPWESRE
VVKEVTMPDGRKRKNTPIEIEVDLE*
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mRNA from alignment at E_fasciculatus_S2_contig835:11738..16417-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig835.16484.1 ID=mRNA_E_fasciculatus_S2_contig835.16484.1|Name=mRNA_E_fasciculatus_S2_contig835.16484.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4680bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig835:11738..16417- (Ectocarpus fasciculatus EfasUO2)
ACTTGGGCTGCTCGCATCCTGCTCGTCCTGGTGCGCTCGAAGACATGCGT
GATCTCAGGAATCAGCTTCGTGCCGCGGTGGTGTTTTGTGCAGCAGGTGA
GCCGGGGTGCTATTTTGCTGCTGGCTGACACATCTTAGATGCCGTCCGTC
GTGCATGCAGCTAGCTCATCATCTCTCATAATCTCGACGTTAGAGACAGG
CATCATGACGGGGTAGGTCACTTTGGGGCAGGCAGGCCATGGTTGTCTCT
CTGCCCATGGTGTGTGCCAGCCCAACTTCCCAGGCCATGCGTTCACATTT
GTGGTCTATGACCGGGGCGCTTTCGGATGAGGTTAATAGTCTACCGCTGT
GGCCAAGACAGCAGTCAAGCTGGAAATGTTCAACTGGACTCCCGTGCTGT
GATGCAGGGCGTGCTGCGCAGGCCGCACACACTCACACTCAACTTGGGCG
CCTCCAAAGGGTGATGATGTTTCGTTGGAGGCGAAGGCGAAGGCTTATAC
GCCTGTGCCTAAGTTGCCGGGCTTCTTGATTCTTGGGCTGTTTGGATGAA
AGCCGTCTTGTCACTTTGGTGTCTTGAAGACATCATGTGTCTTCCAATGT
GCCAACAGCTCTACAGGGCTGGAATGTGAGCACTGGAATGTGAGCCGCCA
GTTACTCTGTACAATTGTATGCATAAGCGGTACAACTCACGGCTGTGGCA
CACATGTAGCGGGCTCGCATGTACTTGCAGATCCAAGGTGCTAGTCTAAT
GGTTGGCCTGAGGGTCGAAGTCGTCGATCGGTTTGACGCACGAGTGGCGC
ATGTCGCTGAACTGGACGTTCATGTTTTTGCATTTCCTTCCAATTCTTGC
GTACATTTTCGATCATACTTACCGAACGACCTTGGATCAGTGGGCACAGC
TATTGCATACCCTGGCCTGTACCAGGCACACCCACAGCAGTATTGTGGAA
GGACCTCATTTGTATCCACAAGCAGTCGTCCGATTTATCTGTCCTCTCTT
GTTATCAGCGTCTTCAGCACATCTGACCGTTCCACATTTGCTGCCTACCA
TGCTGCGCGGCCCTGACAGGACCGGTGGCGTCGTTCCTGCCGTCGTTTTC
ACCTGCGAGGGCGAGGGCAGGACCTGTTGGAGCTCCCTGCTCACGAGGTG
AAGACAACGCAAAGTGTGGCTTTGGCTTTGCTGTACGCAGCTTGCCACTC
GTGTTCTCCAAACTCTTCGCTCACTAGGGGTTGCCCAAAAATGTCAACTA
CTGTATCTGTCGCTCTTGGGCCACGCCGTGTCAGATCTGATGACCTTCAT
GGTATCTTTTGTGTGCAACTCCTCCCACTCGTCCGCGAGCGTTGTCTCAC
GCAATAGAACCGTCCAACCTAGCGGCGAGAAAGACTGAAATCTCACGCGA
CCCCCAGTTCCGTGATTGAGCCGTTGGTATCCCCTGTTGCTGTTGCAATG
TATCATCCCAGAGGCCTAGAACTCTAGACACAGAATCCCACCGCAAATCG
TGCGCGGGCCTGCTGGTACTGGCCTGTGCCTCGCATGTGACAACTTGTCC
GTTGTTGTGTTGTACTGCAGGCGTGGAGCCTCGACGGAGCCCCTCCCGAG
CACCCGTGGGTTGCACCCAACTCGAAGCCACTGCCGAAAGGCCGGAAGGA
CACGCCCTGCAAGAGGGGCAAAATGAAAAAGCCTCCTCTTCGTCCAGTGC
CGACACACCGCCAGCAGTTGCCCAGGCTAGTCCAGTGGTCGACAGAAGTA
GTGCGGAGGGCGGGGAAGAGGGGTCCGGGCTAGCGCAGAACGTGGCGGCG
GTAGCGAAAGAGACGGACGCAGCGGCTAGCGTTGGGCAGAGTGCAGAGGA
GGAGGAGGTAATGGCGGAGCTGTTGGCGCATCAGTCGGGGGGGCAGGACG
AGGAGCAGGAGGTGGAGACCGCGCCTAAACCTACGGTGAGCTGCGGTCTC
TCCAGCAAGTTTATGCACGTGCTGCTTGCCTCACGAGAGGAAATCTCGCA
GCAGTTATGCAATAGTTAAAGATTCACTTGGAGGCCGTTGGCATGGTTCG
AGCGTACTGTAGCGAGATGTTTTTCGGTCTGGTCGTGTTGGCTACACTGT
CGGGGGATAAGCCCGTGTCCGGAACAGCCTTTGCGTCGGAAAGGAAGGCC
GCAAGACGAGGGACGTGATTTCTTTTTGAGTGTATGCCGTGTCGATCATG
CACTCCGTGACTTGCGTTGCGTGTGGCGAGGCAATGGGAATCACTCACTC
GCCATGCGCCTTGCTGGATCGTGCCCCGGCTTCTCCTTCTCGTTTCTCAG
AAGCGCGTGACGAAGCGGCTAAAGAAGTACTTCCCGAAGGACTTCCAGGA
CACGACGTGGACGGTGGCAGTCCAGTGGAACCACTCCAAGTACGAGGTCA
AGACTACCAAGGTCAGCCGTGAGCCCTCTCGGGGCCCTTCGCAATTGTTT
TTACAATTTTTCCGATTTGACGCCGACCACTCGCTGGCTGTCAAGGTTCT
GCTCGTCAGGGTTTGTATGCACTGCACATACAACTATTATTTTCTGTGTA
GCCTGTGGATCTGACTGAACAAGGCTCGGCGTCGCGCCGCTGTGCCGTCA
AGCAGTAGAAGAGGCGCCAGATATTTTTCGCGAAATATGCATGATTCTTC
TAGATGGCACCGGACGTGATGCTTTGTAAGGCCGTAACATGTGTTGACAG
AGGTCGAAACATCCCTCTTTGTGAACACCACTCTGTGCGGTTTGCCATGT
CCATCTGGCCTGCCGCAGGTCGCTCTGAAGGCGGACGGCCAAGTGGTCTG
GCTCGACAAAGGGAAGGGGTCCTGGATCCTGCGCACCAAGAGCCGCGACA
TCTCCATCTACCGCAACTTCTTCCTCAACTGGGCCGGCATGCGGATTTAC
TCGGCCAAGCTGTTGAATAACACCTGCGACATGTACCTGTCAGGCGTTAT
CAAGGGCTGGCAGCCGTTCCTGCCGCTTTCGAAGATGGGAACGTGGCAGG
CTGTCCGGAGGTGTGTACGTATACAGTATATACGTGAGGGCAGGATAGGA
TAGAAGGATCGTGAGCGAAGGAGGTGTCCCCACGCTCAAGTACTTGCGCC
TCGCGTAGATTGCATCGACTTGGCCGAATCGCGTGTTTCTGCCTTTGCGC
AACGCATGACACTTGCGAGTGCGTCCTGACTTGATGCACGACTTCCGGAC
AGAATTTGCGCGCTCCGGTTGTTGCGCCCAACACCTGGTCGATGTCTTAT
CGGGGGGTTATTTTGCTCTTTGCGCACCTACATCGTGCTGCTGCCCATGT
ACGAATATCATGTTTACTCATTCGCTTGATGCGAACGCAACCCTTTTTTT
TTTGTGGAGGGGCTTTCACGGCTTGGTGGGCGTTGCAGTGACATACTTTT
GCTTTGTGTTTGATATCGAGAAGTTTAAGCAACAACGATTGAAGACCCGC
AGCTCGTATCCCGAAGGAAGTCCTGAGCCCCCCCCTCCCCTCCTTATCGC
GGAGAGTATGATCCTCGATCCTGTCCGCTCAAACGAGAGCAACACCGTTT
TGGCGTCGTCGCCAACTGTTCCTGTTCACCACACGCCCGGGAGTTCCCCC
GCAGGCATTTTTCGTGCGCATCGCGCTGCGGCTTATTCCTATGTAACGAC
GTGCCGGTGCGCTATTAATTGTTTTTGTGAACGCGCGTGCCTTGTCCCAT
CGTTTCGTATTCCACCTCTCTAGAGGGATCACGCTGGACGAGAGCACGCC
GCGGCCACCCTGGGAGTCAAGGGAGGTTGTCAAGGAGGTCACCATGCCGG
ATGGGCGCAAAAGAAAGAACACGCCCATTGAAATAGAGGTAGATTTAGAG
TAGAGGCGCGGTTTCCTATCGGAATGAACGGAGAGCCACACACGGCACGG
CGGTTATTGTCTCGTCTGTTAGACGTAAAATTACTTAGTTTCCTCTTGGA
CTGACTGCCGATCGCTCAAGCGCGCCGGGCGTAATGCTTGTGGGCGGTGT
CATAGAAAGGGTCTGCGATGTAGCCATCCATGCCTGGCGGCGATTTTGTA
TCTGCGGTACATGTATGGCCTGATTTGTTGATTTGTAGTGCCTTGTATTC
AGCGGTAGATGTTGACATTGACAAGGCCACACCCGACCGGGCCATGATTT
GTTTGGAAGCTTCTATTAGTGTTCGAGTGGAACACCCATATTTTCCCGCC
AGTGTAGACTCCGGTAAAAGGGGGGATCTTGTAAGTGTATGTCGTTGATC
CGAGGCTTGATAACATCGTGGGTTCATCAGGCACTGGCTGCTCCTGTATT
GTGTCCTCCCGCACCCATGTAAGATGCTGCTTGAGAGTCTTGACTTGCTT
CAGCGGAAAATCCTGGTTCTGGCTGCCGCCAGATGGTTAAGGGTTAAGCT
TCATCCTCAACATCCTCAATTGTCGGGGTCGCGCAGACAGGACCAAAGCA
ACCGCTGTCCGCTCATCAGTACCAACATGGTGGCGTGTGCGTGGTTTTTG
GTTGTGAGTTCCTTTGCCTTGCCTTGCCTGGCCTTGCCTTGCCTTGCCTT
GCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTTGCCTT
GCCTTGCCTGCCGGTCTGGAACCCGCGTTGATGCACACCGTTGACATACC
GGGAGATGTCGAAAAGAAGTTCAAAACTCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig835:11738..16417-

>mRNA_E_fasciculatus_S2_contig835.16484.1 ID=mRNA_E_fasciculatus_S2_contig835.16484.1|Name=mRNA_E_fasciculatus_S2_contig835.16484.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=978bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig835:11738..16417- (Ectocarpus fasciculatus EfasUO2)
ATGCGTGATCTCAGGAATCAGCTTCGTGCCGCGGTGGTGTTTTGTGCAGC
AGGACCGGTGGCGTCGTTCCTGCCGTCGTTTTCACCTGCGAGGGCGAGGG
CAGGACCTGTTGGAGCTCCCTGCTCACGAGGCGTGGAGCCTCGACGGAGC
CCCTCCCGAGCACCCGTGGGTTGCACCCAACTCGAAGCCACTGCCGAAAG
GCCGGAAGGACACGCCCTGCAAGAGGGGCAAAATGAAAAAGCCTCCTCTT
CGTCCAGTGCCGACACACCGCCAGCAGTTGCCCAGGCTAGTCCAGTGGTC
GACAGAAGTAGTGCGGAGGGCGGGGAAGAGGGGTCCGGGCTAGCGCAGAA
CGTGGCGGCGGTAGCGAAAGAGACGGACGCAGCGGCTAGCGTTGGGCAGA
GTGCAGAGGAGGAGGAGGTAATGGCGGAGCTGTTGGCGCATCAGTCGGGG
GGGCAGGACGAGGAGCAGGAGGTGGAGACCGCGCCTAAACCTACGAAGCG
CGTGACGAAGCGGCTAAAGAAGTACTTCCCGAAGGACTTCCAGGACACGA
CGTGGACGGTGGCAGTCCAGTGGAACCACTCCAAGTACGAGGTCAAGACT
ACCAAGGTCGCTCTGAAGGCGGACGGCCAAGTGGTCTGGCTCGACAAAGG
GAAGGGGTCCTGGATCCTGCGCACCAAGAGCCGCGACATCTCCATCTACC
GCAACTTCTTCCTCAACTGGGCCGGCATGCGGATTTACTCGGCCAAGCTG
TTGAATAACACCTGCGACATGTACCTGTCAGGCGTTATCAAGGGCTGGCA
GCCGTTCCTGCCGCTTTCGAAGATGGGAACGTGGCAGGCTGTCCGGAGAG
GGATCACGCTGGACGAGAGCACGCCGCGGCCACCCTGGGAGTCAAGGGAG
GTTGTCAAGGAGGTCACCATGCCGGATGGGCGCAAAAGAAAGAACACGCC
CATTGAAATAGAGGTAGATTTAGAGTAG
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