mRNA_E_fasciculatus_S2_contig8343.16480.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: DNA (helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN1_ECTSI) HSP 1 Score: 419 bits (1076), Expect = 4.740e-138 Identity = 225/257 (87.55%), Postives = 228/257 (88.72%), Query Frame = 1
Query: 310 RPVVSTRTLAVGDESAAPGKTEGASAEGL-GVEDAREALRSLFGHDDFRDGQ--------------------------EEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNVNR 999
R +VSTRTLAVGDESAAPGKTEGASAEGL G+EDAREALRSLFGHDDFRDGQ EEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFV TLKG+KVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNVNR
Sbjct: 11 RLIVSTRTLAVGDESAAPGKTEGASAEGLLGMEDAREALRSLFGHDDFRDGQAKDQHSRRWYALVYKPGLSFQTSTKEEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGIKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNVNR 267
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW0_9PHAE) HSP 1 Score: 265 bits (678), Expect = 6.130e-79 Identity = 160/269 (59.48%), Postives = 168/269 (62.45%), Query Frame = 1
Query: 421 LRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQT-------------------------------------------DALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISE---------------------------------WGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNVNR 999
L + + + V+ LL ++C FPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQ D L AGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFV TL+GVKVALFVVDEAHCISE WGHNFRPDYLRLADFAKAARANARLALTA ATP+VAVDIANRLDIPPSNVNR
Sbjct: 13 LTTAMTDGNIAKNDDTVIDALL--KAC--FFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQVWYMLLNHNLFSLLSARQDIALCRGQLTVLVLLWMGLGTIAGVKDKLGPAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLQGVKVALFVVDEAHCISEGRVCCGAQRQMPLPVEAKRTSTEPVLHLLVSPQWGHNFRPDYLRLADFAKAARANARLALTAAATPQVAVDIANRLDIPPSNVNR 277
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: DEAD (box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G9_9STRA) HSP 1 Score: 240 bits (613), Expect = 3.370e-69 Identity = 132/234 (56.41%), Postives = 151/234 (64.53%), Query Frame = 1
Query: 406 DAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGV------------------------------------KVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNVNR 999
D AL+ FG+D+FRDGQEEVV LL S A + PTGAGKS+CYQLPG ++AR G G T+VVSPLIALMKDQ AL A G+PCA+LDS+L+A D Y+ +R G LLYVSPERFNNERF S KG +VALFVVDEAHCISEWGHNFRPDYLRLA FA+AA A A LALTATATP+VA D+ RL I +V R
Sbjct: 50 DVHAALKYYFGYDEFRDGQEEVVRLLLQQRSAAAILPTGAGKSLCYQLPGLVLARAGRGTTVVVSPLIALMKDQAQALAARGLPCARLDSSLDAAVARDAYDMVRRGRAGLLYVSPERFNNERFASAFKGALVHFARWAQLRTVERRGAAARARISSEAGLGALSKARVALFVVDEAHCISEWGHNFRPDYLRLAAFARAAGAAATLALTATATPRVAADMCARLAIAQHDVVR 283
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: Helicase (ATP-binding domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0SQ01_9ZZZZ) HSP 1 Score: 218 bits (555), Expect = 7.570e-66 Identity = 111/197 (56.35%), Postives = 140/197 (71.07%), Query Frame = 1
Query: 403 EDAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNV 993
E AR+ L+ +FG + FRDGQE VV +LL+G S +FPTG GKS+CYQLP ++ GLTLV+SPLIALMKDQ D L++ G P A+LDS+L E +++ + AG + LLYVSPER NERF+ +L K+AL VDEAHCISEWGHNFRPDYL++A+ A+ LALTATATP+VA DIA I P +V
Sbjct: 14 EHARKTLKEVFGFEGFRDGQEAVVMRLLSGRSVLAIFPTGGGKSLCYQLPSLVLD----GLTLVISPLIALMKDQLDFLVSRGAPAARLDSSLSREETLAVHDAMNAGRLKLLYVSPERLGNERFLRSLARRKIALLAVDEAHCISEWGHNFRPDYLKIAEIARQLGVERVLALTATATPQVAGDIAQGFGIAPGDV 206
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: RecQ (family ATP-dependent DNA helicase n=3 Tax=root TaxID=1 RepID=A0A2E9MGE8_9BACT) HSP 1 Score: 226 bits (575), Expect = 4.660e-65 Identity = 118/198 (59.60%), Postives = 139/198 (70.20%), Query Frame = 1
Query: 406 DAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNVNR 999
DAR AL+ F DDFR GQ E V LLAG S A VFPTG GKS+CYQLP L+ GLTLVVSPLIALMKDQ DAL G+ A+LDS+L E + + +R+G + LLYV+PERFNNERF + G++++LF VDEAHCISEWGHNFRPDYL+LA FA+ A LALTATATP+V DI DI P + R
Sbjct: 4 DARAALKQHFDFDDFRPGQGEAVGHLLAGHSTAAVFPTGGGKSLCYQLPALLLP----GLTLVVSPLIALMKDQIDALQRRGIEAARLDSSLSLDEYRSVMDGVRSGQLRLLYVAPERFNNERFREAISGIRISLFAVDEAHCISEWGHNFRPDYLKLAGFARQYEAERVLALTATATPRVLDDICAGFDIRPEHAVR 197
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: ATP-dependent (DNA helicase RecQ n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6AZ83_9PROT) HSP 1 Score: 217 bits (552), Expect = 8.570e-65 Identity = 108/193 (55.96%), Postives = 139/193 (72.02%), Query Frame = 1
Query: 400 VEDAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDI 978
V A+E L++ FGH++FR GQ +V+ ++L G+S A VFPTG+GKS+CYQLP L+ GLTLVVSPL+ALMKDQ D+L+A G+ A+LDSTL E +R G + +LYV+PERF NERF + G+ ++LF VDEAHCISEWGHNFRPDYL+L FAK A LALTATATP+V +DI ++
Sbjct: 5 VSKAQELLKTYFGHENFRAGQAQVIEQILNGKSSAAVFPTGSGKSLCYQLPALLLP----GLTLVVSPLLALMKDQIDSLLAKGIKAARLDSTLTNDEYQQTMRDVRNGVIKILYVAPERFMNERFRGAMAGINISLFAVDEAHCISEWGHNFRPDYLKLPIFAKTLGAKVVLALTATATPQVLLDIQKSFEV 193
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: RecQ (family ATP-dependent DNA helicase n=1 Tax=Alkalilimnicola sp. S0819 TaxID=2613922 RepID=A0A833IRD6_9GAMM) HSP 1 Score: 224 bits (570), Expect = 2.630e-64 Identity = 114/191 (59.69%), Postives = 140/191 (73.30%), Query Frame = 1
Query: 412 REALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPP 984
R+AL+ FG D FR GQ VV LLAG+S A VFPTG GKS+CYQLP L+ G+TLVVSPLIALMKDQ DAL A G+ +LDS+L A E + +++RAG++ +LYV+PERFNNERF + + ++ALF VDEAHCISEWGHNFRPDYL+LA +A+ +A LALTATATP+V DI DI P
Sbjct: 6 RDALQQYFGFDQFRPGQAPVVDHLLAGQSAAAVFPTGGGKSLCYQLPALLLP----GVTLVVSPLIALMKDQIDALAARGIAARRLDSSLSAEEYRAVMDEVRAGTLRILYVAPERFNNERFRAAIARTRIALFAVDEAHCISEWGHNFRPDYLKLAGYARELQAERVLALTATATPQVLEDICRLFDIRP 192
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: RecQ (family ATP-dependent DNA helicase n=1 Tax=Marinobacterium rhizophilum TaxID=420402 RepID=UPI0003A27C71) HSP 1 Score: 223 bits (569), Expect = 3.300e-64 Identity = 117/194 (60.31%), Postives = 140/194 (72.16%), Query Frame = 1
Query: 409 AREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSN 990
A E L++ FG + FRDGQ+ + KLLAGES VFPTG GKS+CYQLP L+ GLTLVVSPLIALM+DQ AL A G+ A+LDS+ EV +IY Q+R G + LLYV+PER NERF+S LK +++AL VDEAHCISEWGHNFRPDYL+LA A+ RA LALTATATP VA DI + IP +N
Sbjct: 4 ALEILKTTFGLEAFRDGQQAAIDKLLAGESVLTVFPTGGGKSLCYQLPALLIE----GLTLVVSPLIALMQDQVAALHARGIAAARLDSSRTGDEVREIYRQLRRGELKLLYVAPERLQNERFLSLLKDLRIALLAVDEAHCISEWGHNFRPDYLKLAQLAQTLRAQRVLALTATATPSVAEDICRQFGIPAAN 193
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: RecQ (family ATP-dependent DNA helicase n=1 Tax=Candidatus Latescibacteria bacterium TaxID=2053570 RepID=A0A3D2Z062_9BACT) HSP 1 Score: 223 bits (567), Expect = 6.950e-64 Identity = 115/198 (58.08%), Postives = 141/198 (71.21%), Query Frame = 1
Query: 406 DAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNVNR 999
D R L+ FG DDF GQ +VV +LLAG S A VFPTG GKS+CYQLP ++ GLTLVVSPLIALMKDQ DAL G+ A+LDS+L+ + + + IR+G + LLYV+PERFNNERF ++G+ ++LF VDEAHCISEWGHNFRPDYL+LA FA+ +A LALTATATP+V DI DI P + R
Sbjct: 4 DPRMTLKQQFGFDDFLPGQADVVERLLAGHSTAAVFPTGGGKSLCYQLPSLMLP----GLTLVVSPLIALMKDQIDALQRRGITAARLDSSLDKDQYRSVMDGIRSGQLRLLYVAPERFNNERFRQAIEGIAISLFAVDEAHCISEWGHNFRPDYLKLAGFARQFQAERILALTATATPRVLDDICAGFDIHPEHAVR 197
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Match: ATP-dependent (DNA helicase RecQ n=1 Tax=Desulforhopalus sp. IMCC35007 TaxID=2569543 RepID=A0A4U0ZQ34_9DELT) HSP 1 Score: 212 bits (539), Expect = 8.390e-64 Identity = 108/196 (55.10%), Postives = 137/196 (69.90%), Query Frame = 1
Query: 406 DAREALRSLFGHDDFRDGQEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVSTLKGVKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNV 993
D + L+S FG D FR GQEEV+ LL GES A +FPTG+GKS+CYQLP L+ GLTLV+SPLIALMKDQ D+L G+ +LDS+L+ + IR+G + +L+V+PER +NERF+S +KG +++L VDEAHCIS WGHNFRPDYL+LA AK LALTATATP+V+ D+A DI NV
Sbjct: 14 DIYQTLKSHFGFDSFRSGQEEVITTLLGGESAAAIFPTGSGKSLCYQLPALLLP----GLTLVISPLIALMKDQIDSLKKQGIAAERLDSSLDEENYRNAINNIRSGQLKILFVAPERMSNERFLSIIKGQQLSLLAVDEAHCISAWGHNFRPDYLKLARVAKELCVERVLALTATATPQVSADMAEAFDIKKKNV 205 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8343.16480.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8343.16480.1 >prot_E_fasciculatus_S2_contig8343.16480.1 ID=prot_E_fasciculatus_S2_contig8343.16480.1|Name=mRNA_E_fasciculatus_S2_contig8343.16480.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=324bp MVTHRLRIMMTLVPILSRLEGRVVAFAARYPRLNSALPTASNSARGAGTGback to top mRNA from alignment at E_fasciculatus_S2_contig8343:2466..6511+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8343.16480.1 ID=mRNA_E_fasciculatus_S2_contig8343.16480.1|Name=mRNA_E_fasciculatus_S2_contig8343.16480.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4046bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8343:2466..6511+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8343:2466..6511+ >mRNA_E_fasciculatus_S2_contig8343.16480.1 ID=mRNA_E_fasciculatus_S2_contig8343.16480.1|Name=mRNA_E_fasciculatus_S2_contig8343.16480.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=972bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8343:2466..6511+ (Ectocarpus fasciculatus EfasUO2)back to top |