mRNA_E_fasciculatus_S2_contig8341.16478.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: RNase_PH (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI) HSP 1 Score: 402 bits (1032), Expect = 3.750e-131 Identity = 223/230 (96.96%), Postives = 225/230 (97.83%), Query Frame = 1
Query: 1 MEETRRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETLR 690
MEETRRDGRR NQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAK+LRMER EGATLDVSFKPESGITS ADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITA VSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSC AVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAET+R
Sbjct: 1 MEETRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITATVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCHAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETVR 230
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: Ribosomal (protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA) HSP 1 Score: 182 bits (463), Expect = 1.210e-48 Identity = 112/236 (47.46%), Postives = 150/236 (63.56%), Query Frame = 1
Query: 19 DGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVS------------GRSVL-LDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAETL 687
DGR G+QIR L A+QGILNRADGS RF GNTSVL AVYGPA + E+P+ A ++VS++ + G + ADAE E +RR+LEE V +RYPR+V+SV++QV+ DDG+VLSAA+NA MAL++AGVEM GM ++ T C + S G S L LDP +EE AT ++A L+ G+L+ + G + EE FA EAA AV ++R + E KV R+ L
Sbjct: 8 DGRTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQVLCDDGSVLSAAINACAMALVDAGVEMIGMPVAATACFSGSGSAAAAAPEQLQHLGESHLQLDPSASEEATTRATVMLAVLAGSDGILTMKMTGQLGAEELFAASEAARKACDAVSVYLRRAVEAKVLRDVANL 243
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: Uncharacterized (protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ13_SAPPC) HSP 1 Score: 176 bits (447), Expect = 1.010e-46 Identity = 103/220 (46.82%), Postives = 140/220 (63.64%), Query Frame = 1
Query: 13 RRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNR 672
R DGR +IRPLA EQG+LNRADGSARF G TSVLA+V GPA AK R E+ GATL+V+FK E G S D E E +LR + E +++ +PR VVS+ +QV+ DDGA+L+ A+NA +AL++AGV M + ++TC I + + LDP ++E AAAT A G+L+ G +S+E+YFAC E +V +FVR+S E K N+
Sbjct: 7 REDGRLVQEIRPLACEQGLLNRADGSARFNHGTTSVLASVSGPAAAKLRRQEKATGATLEVTFKAEKGAPSARDKEYEMILRETFEPIIVLENFPRAVVSITVQVVEDDGALLAVAINAVNLALIDAGVPMRSIVGAITCSI---LEDGQLCLDPSRSEGETAAATVTTACCGNNDGILTSMTSGVLSEEQYFACSEICRRAIDSVLAFVRISQESKFNK 223
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: Exosome (component Rrp46 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZII6_9STRA) HSP 1 Score: 174 bits (442), Expect = 5.020e-46 Identity = 104/220 (47.27%), Postives = 141/220 (64.09%), Query Frame = 1
Query: 4 EETRRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQK 663
E+ R DGR +IRPLA EQG+LNRADGS+RF G TSVLA+V GPA AK R E+ ATL+V FKPE G S D E E +LR++ E ++L +PR V+SV +QV+ DDGA+L+ A+NA +ALL+AGV M G+ ++TC I + + LDP +E AAAT A+ GVL+ G +++ +YFAC E G +V +FVR++ E K
Sbjct: 5 EDRREDGRLVQEIRPLACEQGLLNRADGSSRFNHGTTSVLASVSGPAAAKLRRQEKMHCATLEVVFKPEKGAASARDKEYEMILRQTFEPIILLENFPRAVISVTVQVVEDDGALLAVAINAVNLALLDAGVPMRGIVGAITCTI---LEDGQLCLDPSLSEGEAAAATVTTASCGNSDGVLTSMTSGVLTEAQYFACSEICRRGIDSVLAFVRIAQETK 221
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: Aste57867_8748 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL27_9STRA) HSP 1 Score: 171 bits (434), Expect = 6.540e-45 Identity = 102/226 (45.13%), Postives = 140/226 (61.95%), Query Frame = 1
Query: 4 EETRRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREAE 681
+E R DGR +IRPL+ EQG+LNRADGSARF G TSVLA+V GPA AK R E+ + ATL+V FK E G + D E EA+LR++ E +V YPR V+S+ +QV+ DDG++L+ A+NA +ALL+AG+ M + ++TC I + + LDP + E AAAT A G+L+ G +S+ +YFAC E +V SFVR+S E K + E
Sbjct: 5 DERRGDGRLVQEIRPLSCEQGLLNRADGSARFSHGTTSVLASVNGPAAAKIRRQEKVDEATLEVVFKAEKGAPTARDKEYEAILRQTFEPIVYLENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRCLVGAITCSI---LEDGQLCLDPARVEGETAAATVTSACAGNNDGILTSLTTGMLSESQYFACSEICRRAVDSVLSFVRISQETKFQKALE 227
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: Uncharacterized (protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA) HSP 1 Score: 157 bits (398), Expect = 5.170e-40 Identity = 93/226 (41.15%), Postives = 138/226 (61.06%), Query Frame = 1
Query: 1 MEETRRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKVNREA 678
E+ R DGR +IRPL+ EQG+LNRADGSARF G+TSVLA+V GPA AK R E+ + AT++V FK + G + D E EA+L+++ + +V YPR V+S+ +QV+ DDG++L+ A+NA +ALL+AG+ M + ++TC I + + LDP E A A+ A G+L+ G +++ +YFA E +V SFVR++ E K + A
Sbjct: 6 QEDRRDDGRLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQVVEDDGSLLAVAINAVNLALLDAGIPMRSLVGAITCSI---LDDGQLCLDPSLTEGDAATASVTAAYAGKNDGILTSITTGLVNESQYFAASEICRRAIDSVLSFVRIAQESKFQKNA 228
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: 3' (exoribonuclease family domain 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WKX0_PHYIN) HSP 1 Score: 157 bits (396), Expect = 1.800e-39 Identity = 94/225 (41.78%), Postives = 140/225 (62.22%), Query Frame = 1
Query: 13 RRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAV--------LSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQK 663
R+DGR GN++RP A+EQG L RADGSAR G+++VLAAVYGP A+ R E + ATLDV FK E GI + + E E ++R++ VVL +PR V+S+++QVI D+G++ + A+NA ++AL++AGV M + + +C I ++ LDP AEE +A + A S GVL+C G +S+E+YFAC EA + +V +F R+ ++K
Sbjct: 22 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARNWRAENTDKATLDVCFKLEKGIMTSKEKEYEQIIRQTFAPVVLTDSFPRAVISIVVQVIEDNGSISFPLFLIIAALAINAVSLALMDAGVPMLSVVTATSCSI---FDDGNLYLDPTAAEEEEAVSWVTTARSSTSDGVLTCITNGLLSEEQYFACSEACQRASESVAAFFRIVQQKK 243
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBP6_9STRA) HSP 1 Score: 154 bits (388), Expect = 1.120e-38 Identity = 98/220 (44.55%), Postives = 133/220 (60.45%), Query Frame = 1
Query: 7 ETRR-DGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQK 663
ETRR DGR +IRPL+ EQ +LNRADGSARF G +SVLA+V GPA AK R E+ A+L+V+FK E G + D E EA+LR++ E ++ +PR V+SV +QV+ DDG++LS A+NA +ALL+AG+ M + +VTC I + LD E A A+ A G+L+ G +S+ YFAC E +V SFVR+S E K
Sbjct: 6 ETRREDGRLVQEIRPLSCEQSLLNRADGSARFSHGTSSVLASVNGPAAAKIRRQEKVSCASLEVTFKAEKGAPTARDKEYEAILRQTFEPIIYLENFPRAVISVTVQVVEDDGSLLSVAINAMNLALLDAGIPMRCLVGAVTCSI---LDDGQFCLDSSLTEGEAAVASVTSACAGNNDGILTSLTTGVLSESHYFACSEICRRAVGSVLSFVRISQETK 222
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: U4/U6 (small nuclear ribonucleoprotein Prp4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVY3_9STRA) HSP 1 Score: 165 bits (417), Expect = 1.320e-38 Identity = 94/217 (43.32%), Postives = 136/217 (62.67%), Query Frame = 1
Query: 13 RRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQK 663
R DGR +IRPLA EQG+LNRADGSARF G TSV+A+V GPAPAK R E ATLDV FK E G+ + D E E +LR++ E ++L +PRTV+S+ +QV+ DDG++L+ ++NA +AL++AG+ M + ++TC + + + +DP E A AT A + +L+ G +++E+YFAC E +V +FVR+S E K
Sbjct: 504 REDGRSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFKAEKGVATARDKEYELILRQTFEPIILLENFPRTVISITVQVVEDDGSLLAVSINAINLALMDAGIPMRSVVGAITCSV---LEDSQLCIDPSLVENDTATATVTTACSANNHQILTSFTSGILTEEQYFACSEICRRAIDSVIAFVRISQESK 717
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Match: Uncharacterized (protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54Q83_DICDI) HSP 1 Score: 153 bits (386), Expect = 2.680e-38 Identity = 88/221 (39.82%), Postives = 141/221 (63.80%), Query Frame = 1
Query: 4 EETRRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGITSPADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAALNAATMALLNAGVEMTGMALSVTCCITAPVSGRSVLLDPCKAEEIDAAATAVVATLSAGGGVLSCRAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKV 666
E TR DGR N IRP+ +EQG LN+ADGSA+F Q + VLAAVYGP + R E+ + ++V+F P G T+ D E E L++ ++E ++L + YPRT +SVI+QV DDG+++S A+NAA +ALL+AG+EM G+ SVT C + S+ +DP EE + A A+ + S ++ + +G++++++YF + AS + SF++L+ + ++
Sbjct: 4 EHTRNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSARKEKILKSYVEVTFTPAFGNTNYIDKEKELLIKNAVESMILTTLYPRTQISVILQVFSDDGSIVSCAINAACLALLDAGIEMNGLLGSVTLCFN---NDGSIYVDPSTEEENQSKAIAIYSFSSINKNIVLSKTIGTLTEDQYFKGLDKASESCDLIISFIKLAVKNRI 221 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8341.16478.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8341.16478.1 >prot_E_fasciculatus_S2_contig8341.16478.1 ID=prot_E_fasciculatus_S2_contig8341.16478.1|Name=mRNA_E_fasciculatus_S2_contig8341.16478.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=231bp MEETRRDGRRGNQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAback to top mRNA from alignment at E_fasciculatus_S2_contig8341:81..3840- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8341.16478.1 ID=mRNA_E_fasciculatus_S2_contig8341.16478.1|Name=mRNA_E_fasciculatus_S2_contig8341.16478.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3760bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8341:81..3840- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8341:81..3840- >mRNA_E_fasciculatus_S2_contig8341.16478.1 ID=mRNA_E_fasciculatus_S2_contig8341.16478.1|Name=mRNA_E_fasciculatus_S2_contig8341.16478.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=693bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8341:81..3840- (Ectocarpus fasciculatus EfasUO2)back to top |