mRNA_E_fasciculatus_S2_contig8340.16477.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8340.16477.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS3_ECTSI) HSP 1 Score: 347 bits (891), Expect = 2.160e-106 Identity = 192/289 (66.44%), Postives = 219/289 (75.78%), Query Frame = 1
Query: 1 MASAISTPQHGCRARGLFTMVVVKNLLQLLVXXXXXITSSASADHTPAQDGGEPT-EEGVTYIYSCDDLVMDRTLVRGAVVFAGDIMCDSTKVIEVAQGYGDVYIVAKNPLPTTMRTKGVIFDIPEGTRVAFSAAAFILERNEGNKDAIFHVGGILGFAAEVPGYEAPDNATPEDLHRMIRAPPGGTVLAHGDSAIYYTDSAVFVIEEPRTNKXXXXXXXXXXXXEAAGGSQEHSAGLLPQEQLQREFEANGVEFVTYLNSCEDLLNERTPFEGFVAVTADIVCPEPKV 864
M++ IS+P+ GCR GL T V KNLL+LLV XXXITS+A+ TPAQDGGEPT E+ TYIYSCDDL MD TLVRG+V GDI+CD TK+IEVAQGYGDV I A T M TKGVIF+IP+GTRV F A AF+ NE NKD IFHV GILGF AE PG+EAPD+ATPEDLHRM+R P GTV A GD A+Y+TDSAVFV+ EP T+K EA GGSQ HSAGL QEQ +RE EA+G++FVTYLNSC+DL NERTPFEG V+VTADIVCPEPKV
Sbjct: 2 MSTVISSPRRGCRPPGLVT--VAKNLLRLLVVLXXXITSAAA--DTPAQDGGEPTSEDTTTYIYSCDDLAMDTTLVRGSVAIMGDIICDKTKIIEVAQGYGDVLIFAD----TIMWTKGVIFEIPKGTRVDFGAPAFVFVSNEDNKDGIFHVDGILGFLAEDPGFEAPDDATPEDLHRMVRLAPDGTVRALGDEAMYFTDSAVFVVAEPSTDKNDNSNSNS----EATGGSQGHSAGLA-QEQQRRELEASGMDFVTYLNSCDDLPNERTPFEGVVSVTADIVCPEPKV 277
BLAST of mRNA_E_fasciculatus_S2_contig8340.16477.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ0_ECTSI) HSP 1 Score: 344 bits (883), Expect = 7.130e-105 Identity = 189/288 (65.62%), Postives = 214/288 (74.31%), Query Frame = 1
Query: 1 MASAISTPQHGCRARGLFTMVVVKNLLQLLVXXXXXITSSASADHTPAQDGGEPTEEGVTYIYSCDDLVMDRTLVRGAVVFAGDIMCDSTKVIEVAQGYGDVYIVAKNPLPTTMRTKGVIFDIPEGTRVAFSAAA-FILERNEGNKDAIFHVGGILGFAAEVPGYEAPDNATPEDLHRMIRAPPGGTVLAHGDSAIYYTDSAVFVIEEPRTNKXXXXXXXXXXXXEAAGGSQEHSAGLLPQEQLQREFEANGVEFVTYLNSCEDLLNERTPFEGFVAVTADIVCPEPK 861
M + IS+ + GCR GL T V KNLL+LLV ITS+A+ TPAQDGGEPT EG TYIYSCDDL MDRTLVRG+V GDI+C TK+IEVAQGYGDVYIVA+ T M KGVIF+IP+GTRV F AAA F+ E NE NKD IFHV GILGF E PG+EAPD+ATPEDLH M+R PG TV AHGD A+YYTDSAVFV+ EP T K EAAGGSQ + AGL QEQLQ+E EA+G++FVT L+SC DL NERTPFEG V+VTADIVCPEPK
Sbjct: 1 MTTVISSSRRGCRPPGLVT--VAKNLLRLLVVLVVLITSAAA--DTPAQDGGEPTAEGATYIYSCDDLAMDRTLVRGSVAIVGDIVCAETKIIEVAQGYGDVYIVAE----TIMWIKGVIFEIPKGTRVDFGAAAGFVFESNEDNKDGIFHVDGILGFLVEDPGFEAPDHATPEDLHGMVRLTPGDTVRAHGDEAMYYTDSAVFVVVEPSTYKNDNSNINS----EAAGGSQGNPAGLA-QEQLQQELEASGMDFVTCLDSCGDLPNERTPFEGVVSVTADIVCPEPK 275
BLAST of mRNA_E_fasciculatus_S2_contig8340.16477.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ5_ECTSI) HSP 1 Score: 339 bits (870), Expect = 3.950e-103 Identity = 199/289 (68.86%), Postives = 224/289 (77.51%), Query Frame = 1
Query: 1 MASAISTPQHGCRARGLFTMVVVKNLLQLLVXXXXXITSSASADHTPAQDGGEPT-EEGVTYIYSCDDLVMDRTLVRGAVVFAGDIMCDSTKVIEVAQGYGDVYIVAKNPLPTTMRTKGVIFDIPEGTRVAFSAAAFILERNEGNKDAIFHVGGILGFAAEVPGYEAPDNATPEDLHRMIRAPPGGTVLAHGDSAIYYTDSAVFVIEEPRTNKXXXXXXXXXXXXEAAGGSQEHSAGLLPQEQLQREFEANGVEFVTYLNSCEDLLNERTPFEGFVAVTADIVCPEPKV 864
M + IS+P+ GCR GL T V KNLL+LLV XXXX TS+A+ TPAQDGGEPT E+ TYIYSCDDL MD TLVRG+V GDI+CD TK+IEVAQGYGDV I A T M TKGVIF+IP+GTRV F A AF+ NE NKD IFHV GILGF AE PG+EAPD+ATPEDLH M+R P GTV A GD A+Y+TDSAVFV+ EP T+K XXXXXXXXX AAGGSQ HSAGL QEQ RE EA+G++FVTYLNSC+DL NER PFEG V+VTADIVCPEPKV
Sbjct: 2 MTTVISSPRRGCRPPGLVT--VAKNLLRLLVVXXXXXTSAAA--DTPAQDGGEPTSEDTTTYIYSCDDLAMDTTLVRGSVAIMGDIICDKTKIIEVAQGYGDVLIFAD----TIMWTKGVIFEIPKGTRVDFGAPAFVFVSNEDNKDGIFHVDGILGFLAEDPGFEAPDDATPEDLHGMVRLAPDGTVRALGDEAMYFTDSAVFVVAEPSTDKNSXXXXXXXXX--AAGGSQGHSAGLA-QEQRPRELEASGMDFVTYLNSCDDLPNERNPFEGVVSVTADIVCPEPKV 279
BLAST of mRNA_E_fasciculatus_S2_contig8340.16477.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ3_ECTSI) HSP 1 Score: 338 bits (868), Expect = 8.030e-103 Identity = 197/289 (68.17%), Postives = 222/289 (76.82%), Query Frame = 1
Query: 1 MASAISTPQHGCRARGLFTMVVVKNLLQLLVXXXXXITSSASADHTPAQDGGEPT-EEGVTYIYSCDDLVMDRTLVRGAVVFAGDIMCDSTKVIEVAQGYGDVYIVAKNPLPTTMRTKGVIFDIPEGTRVAFSAAAFILERNEGNKDAIFHVGGILGFAAEVPGYEAPDNATPEDLHRMIRAPPGGTVLAHGDSAIYYTDSAVFVIEEPRTNKXXXXXXXXXXXXEAAGGSQEHSAGLLPQEQLQREFEANGVEFVTYLNSCEDLLNERTPFEGFVAVTADIVCPEPKV 864
M + IS+P+ GCR GL T V K LL+LL XXXXX A+ +TP QDGGEPT E+ TYIYSCDDL MDRTLVRG+V G+IMC TK+IEV QGYGDVYIVA+ T M KGVIF++P+GTRV F AAAF+ E NE NKD IFHV G LGF A P YEAPD+ATPEDLHRM+R PGGTVL H D A+YYTDSAVFVI EP T+K XXXXXXXXXXEAAGGSQ HSAGL +E LQRE E G++ VT+L SC+DL NERTPFEG V+VTADIVCPEPKV
Sbjct: 2 MTTVISSPRRGCRPPGLVT--VAKTLLRLLXXXXXXXXXXAA--NTPTQDGGEPTSEDTTTYIYSCDDLTMDRTLVRGSVALMGNIMCAETKIIEVDQGYGDVYIVAE----TIMWIKGVIFEVPKGTRVDFGAAAFVFESNEDNKDGIFHVDGTLGFLAGDPDYEAPDDATPEDLHRMVRGDPGGTVLTHRDEAMYYTDSAVFVIVEPSTDKNDXXXXXXXXXXEAAGGSQGHSAGLA-EEHLQRELETRGLDLVTHLKSCDDLPNERTPFEGIVSVTADIVCPEPKV 281
BLAST of mRNA_E_fasciculatus_S2_contig8340.16477.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D9_9PHAE) HSP 1 Score: 315 bits (806), Expect = 1.890e-94 Identity = 184/310 (59.35%), Postives = 211/310 (68.06%), Query Frame = 1
Query: 7 SAISTPQHGCRARGLFTMVVVKNLLQLLVXXXXXITSSASADHTPAQDGGEPTEEGVTYIYSCDDLVMDRTLVRGAVVFAGDIMCDSTK------------------------VIEVAQGYGDVYIVAKNPLPTTMRTKGVIFDIPEGTRVAFSAAAFILERNEGNKDAIFHVGGILGFAAEVPGYEAPDNATPEDLHRMIRAPPGGTVLAHGDSAIYYTDSAVFVIEEPRTNKXXXXXXXXXXXXEAAGGSQEHSAGLLPQEQLQREFEANGVEFVTYLNSCEDLLNERTPFEGFVAVTADIVCPEPKV 864
+ IS+P+ G GL T V K+LL+LLV ITS+A+ H QDG EP E TYIYSCDDLVMDRT+VRG+VVF GDI+C TK +IEVAQGYGDV I A+ T M TKGVIF+IP+ TRV F AAAF+ NE N D IFHV GILGF A +EAPD+ATPED HRM+R PGGTVLA GD A+Y+TDSAVFVIEEP T+K XX EAAGGSQ HSAGL QEQL+RE EA+G++ VTYL SC+DL NERTPFEG V+VTADIVCPEPKV
Sbjct: 4 TVISSPRRGRHPPGLVT--VAKHLLRLLVLLVVLITSAAADTH--GQDGEEPIGEHATYIYSCDDLVMDRTVVRGSVVFMGDIICADTKAQSQLHAVRSIHAPTMHDFAVSERIIEVAQGYGDVLIFAE----TIMWTKGVIFEIPQDTRVDFGAAAFVFVSNEDNMDGIFHVDGILGFHAVGHDFEAPDDATPEDPHRMVRGAPGGTVLALGDEAMYFTDSAVFVIEEPSTDKNDNSNXXS----EAAGGSQGHSAGLA-QEQLERELEASGLDLVTYLTSCDDLPNERTPFEGMVSVTADIVCPEPKV 300
BLAST of mRNA_E_fasciculatus_S2_contig8340.16477.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L206_9PHAE) HSP 1 Score: 277 bits (709), Expect = 1.260e-88 Identity = 162/288 (56.25%), Postives = 186/288 (64.58%), Query Frame = 1
Query: 1 MASAISTPQHGCRARGLFTMVVVKNLLQLLVXXXXXITSSASADHTPAQDGGEPTEEGVTYIYSCDDLVMDRTLVRGAVVFAGDIMCDSTKVIEVAQGYGDVYIVAKNPLPTTMRTKGVIFDIPEGTRVAFSAAAFILERNEGNKDAIFHVGGILGFAAEVPGYEAPDNATPEDLHRMIRAPPGGTVLAHGDSAIYYTDSAVFVIEEPRTNKXXXXXXXXXXXXEAAGGSQEHSAGLLPQEQLQREFEANGVEFVTYLNSCEDLLNERTPFEGFVAVTADIVCPEPKV 864
M +AIS P+ GC GL T V NLL+LLV ITS+A+ TP QDGGE T E TYIYSCDDLVMDRT+VRG+V G+I C TK+IEVAQGYGDVYIVA+ T M TKGVIF+IP+GTRV F AAAF+ E NE EDLHRM+R PGGTV+ H D A+YYTDSAV VI EP T+K EAA GSQ HSA L QE+LQRE EA+G++ VT+L SC+DL ERTP EG V+VTADIVCPEPKV
Sbjct: 1 MTTAISYPRRGCHPPGLVT--VANNLLRLLVVLVVLITSAAA--DTPGQDGGELTAEDATYIYSCDDLVMDRTVVRGSVALMGNITCAETKIIEVAQGYGDVYIVAE----TVMWTKGVIFEIPKGTRVDFGAAAFVFESNE------------------------------EDLHRMVRGDPGGTVVTHRDEAVYYTDSAVLVIVEPSTDKNGNSNSNS----EAAVGSQRHSADLA-QEKLQRESEASGLDLVTFLKSCDDLPYERTPVEGIVSVTADIVCPEPKV 245
BLAST of mRNA_E_fasciculatus_S2_contig8340.16477.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L867_9PHAE) HSP 1 Score: 218 bits (554), Expect = 1.480e-60 Identity = 136/286 (47.55%), Postives = 167/286 (58.39%), Query Frame = 1
Query: 7 SAISTPQHGCRARGLFTMVVVKNLLQLLVXXXXXITSSASADHTPAQDGGEPT-EEGVTYIYSCDDLVMDRTLVRGAVVFAGDIMCDSTKVIEVAQGYGDVYIVAKNPLPTTMRTKGVIFDIPEGTRVAFSAAAFILERNEGNKDAIFHVGGILGFAAEVPGYEAPDNATPEDLHRMIRAPPGGTVLAHGDSAIYYTDSAVFVIEEPRTNKXXXXXXXXXXXXEAAGGSQEHSAGLLPQEQLQREFEANGVEFVTYLNSCEDLLNERTPFEGFVAVTADIVCPEPK 861
+ IS+P+ GC GL T V KNLL+ LV + +SA+ D T AQD GEPT E+ +TYIYS DDL MDRT++RG+V F GDI+C TK NKD IFHV GIL F AE YE+PD+ATPED HR++R PGGTV + +Y TDSA+FV++E ++K EAAGGSQ HSAGL QEQL+RE EA+G++F TYLNS ED+LNERTPFEG V+ TADIVCP+PK
Sbjct: 1587 TVISSPRRGCHPPGLVT--VAKNLLRPLVV----VITSAATD-TRAQDRGEPTAEDTITYIYSRDDLAMDRTIIRGSVAFMGDIICAETK---------------------------------------------------DNKDGIFHVDGILEFHAEDLDYESPDDATPEDPHRIVRDDPGGTVEVFNGATMYSTDSAMFVVKESISDKNDNRNSNS----EAAGGSQGHSAGLA-QEQLERELEASGLDFATYLNSWEDVLNERTPFEGVVSDTADIVCPQPK 1809
BLAST of mRNA_E_fasciculatus_S2_contig8340.16477.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ01_9PHAE) HSP 1 Score: 181 bits (460), Expect = 8.360e-53 Identity = 95/143 (66.43%), Postives = 107/143 (74.83%), Query Frame = 1
Query: 436 DAIFHVGGILGFAAEVPGYEAPDNATPEDLHRMIRAPPGGTVLAHGDSAIYYTDSAVFVIEEPRTNKXXXXXXXXXXXXEAAGGSQEHSAGLLPQEQLQREFEANGVEFVTYLNSCEDLLNERTPFEGFVAVTADIVCPEPKV 864
D IFHV GI GF AE P YEAPD+ATPE+LHRM+R PGGTVL D A+YYTD AVFVI EP T+K EAAGGSQ HSAGL QEQ+QRE EA+G++ VT+L SC+DL NERTP EG V+VTADIVCPEPKV
Sbjct: 2 DGIFHVNGISGFLAEDPDYEAPDDATPENLHRMVRGDPGGTVLTRRDEAMYYTDFAVFVIVEPSTDKNNNSNS------EAAGGSQGHSAGLA-QEQVQRELEASGLDLVTFLKSCDDLPNERTPVEGIVSVTADIVCPEPKV 137
BLAST of mRNA_E_fasciculatus_S2_contig8340.16477.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ2_ECTSI) HSP 1 Score: 155 bits (393), Expect = 3.660e-44 Identity = 87/142 (61.27%), Postives = 101/142 (71.13%), Query Frame = 1
Query: 1 MASAISTPQHGCRARGLFTMVVVKNLLQLLVXXXXXITSSASADHTPAQDGGEPTEEGVTYIYSCDDLVMDRTLVRGAVVFAGDIMCDSTKVIEVAQGYGDVYIVAKNPLPTTMRTKGVIFDIPEGTRVAFSAAAFILERNE 426
MASAIS+P+ R GL T V KNL++LLV ITS+ TPAQDGG+PT E YIYSCDDLVMDRTLVRG+V GDI+C TK+IEVAQGYGDV+I A+ T M KGVIF+IP+GTRV F AA F+ E NE
Sbjct: 1 MASAISSPRRDRRPPGLVT--VAKNLVRLLVVLVVLITSA----DTPAQDGGDPTAEDAKYIYSCDDLVMDRTLVRGSVAIMGDIVCAETKIIEVAQGYGDVFIFAE----TIMWIKGVIFEIPKGTRVNFGAAGFVFESNE 132
BLAST of mRNA_E_fasciculatus_S2_contig8340.16477.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ1_ECTSI) HSP 1 Score: 147 bits (371), Expect = 1.570e-38 Identity = 88/148 (59.46%), Postives = 101/148 (68.24%), Query Frame = 1
Query: 430 NKDAIFHVGGILGFAAEVPGYEAPDNATPEDLHRMIRAPPGGTVLAHGDSAIYYTDSAVFVIEEPRTNKXXXXXXXXXXXXEAAGGSQEHSAGLLPQEQLQREFEANGVEFVTYLNSCEDLLNERTPFEGFVAVTA---DIVCPEPKV 864
NKD IFHV GILGF AE P +EAPD+ATPEDLH M R G VLAHGD A+YYTDSAVFV+ EP T+K XXXX EAAGGSQ HSAGL QEQLQRE EA+G++ SC +L ERTP EG V D++C E ++
Sbjct: 3 NKDGIFHVDGILGFLAEYPDFEAPDDATPEDLHGMARLARDGIVLAHGDEAMYYTDSAVFVVVEPSTDKNDNSXXXX----EAAGGSQGHSAGLA-QEQLQRELEASGLDL-----SCNELRFERTPVEGMSGVLLLDDDVMCKEKRI 140 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8340.16477.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8340.16477.1 >prot_E_fasciculatus_S2_contig8340.16477.1 ID=prot_E_fasciculatus_S2_contig8340.16477.1|Name=mRNA_E_fasciculatus_S2_contig8340.16477.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=288bp MASAISTPQHGCRARGLFTMVVVKNLLQLLVVIVVLITSSASADHTPAQDback to top mRNA from alignment at E_fasciculatus_S2_contig8340:3102..6368+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8340.16477.1 ID=mRNA_E_fasciculatus_S2_contig8340.16477.1|Name=mRNA_E_fasciculatus_S2_contig8340.16477.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3267bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8340:3102..6368+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8340:3102..6368+ >mRNA_E_fasciculatus_S2_contig8340.16477.1 ID=mRNA_E_fasciculatus_S2_contig8340.16477.1|Name=mRNA_E_fasciculatus_S2_contig8340.16477.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=864bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8340:3102..6368+ (Ectocarpus fasciculatus EfasUO2)back to top |