mRNA_E_fasciculatus_S2_contig834.16475.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig834.16475.1
Unique NamemRNA_E_fasciculatus_S2_contig834.16475.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig834.16475.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI96_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 4.420e-52
Identity = 96/117 (82.05%), Postives = 100/117 (85.47%), Query Frame = 3 
Query:  423 QASRFPFALQAPRSFLAKNDAIMFLPGSRRGFHSFLNSGRSKRLMGDAVLFKTARADGEHLGPGSYDLPPTLNNGRRPSTAPESSLGVKPPQSRPRSRPRRAVSSTSSIIGEDA*KG 773
            Q    PFA QA RSFL K DAI+FLPGSRRGFHSFLNSGRSKRLMGDAVLFKTARADGEHLGPGSYDLPPTLNNGRRPST PE+SL VKP Q+RPRSR RRAVSSTSS+ G    KG
Sbjct:   13 QIPMVPFARQASRSFLTKTDAIIFLPGSRRGFHSFLNSGRSKRLMGDAVLFKTARADGEHLGPGSYDLPPTLNNGRRPSTGPEASLRVKPQQTRPRSRLRRAVSSTSSVNGTGCLKG 129
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig834.16475.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.420e-5282.05protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig834contigE_fasciculatus_S2_contig834:9271..14553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1766
Hectar predicted targeting categoryother localisation
Exons7
Cds size639
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig834.16475.1prot_E_fasciculatus_S2_contig834.16475.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig834 9399..13013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842493.3685894-UTR-E_fasciculatus_S2_contig834:9270..93981696842493.3685894-UTR-E_fasciculatus_S2_contig834:9270..9398Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig834 9271..9398 +
1696842493.4621134-UTR-E_fasciculatus_S2_contig834:13013..130911696842493.4621134-UTR-E_fasciculatus_S2_contig834:13013..13091Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig834 13014..13091 +
1696842493.4739602-UTR-E_fasciculatus_S2_contig834:13632..145531696842493.4739602-UTR-E_fasciculatus_S2_contig834:13632..14553Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig834 13633..14553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842493.3795793-CDS-E_fasciculatus_S2_contig834:9398..94461696842493.3795793-CDS-E_fasciculatus_S2_contig834:9398..9446Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig834 9399..9446 +
1696842493.3906488-CDS-E_fasciculatus_S2_contig834:9617..97571696842493.3906488-CDS-E_fasciculatus_S2_contig834:9617..9757Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig834 9618..9757 +
1696842493.4078982-CDS-E_fasciculatus_S2_contig834:10926..110451696842493.4078982-CDS-E_fasciculatus_S2_contig834:10926..11045Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig834 10927..11045 +
1696842493.4202206-CDS-E_fasciculatus_S2_contig834:11399..115121696842493.4202206-CDS-E_fasciculatus_S2_contig834:11399..11512Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig834 11400..11512 +
1696842493.4382868-CDS-E_fasciculatus_S2_contig834:12258..123551696842493.4382868-CDS-E_fasciculatus_S2_contig834:12258..12355Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig834 12259..12355 +
1696842493.4531555-CDS-E_fasciculatus_S2_contig834:12891..130131696842493.4531555-CDS-E_fasciculatus_S2_contig834:12891..13013Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig834 12892..13013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig834.16475.1

>prot_E_fasciculatus_S2_contig834.16475.1 ID=prot_E_fasciculatus_S2_contig834.16475.1|Name=mRNA_E_fasciculatus_S2_contig834.16475.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=213bp
MIASRERPSSSFRSSSDRFRDVASYRQGRCRREENDYRDLGPGKYDGSSI
MELQQSRPKTRGSILGGSGGHRSTVPRAGVNWYPGRKDYPNLGPGVYHQA
SRFPFALQAPRSFLAKNDAIMFLPGSRRGFHSFLNSGRSKRLMGDAVLFK
TARADGEHLGPGSYDLPPTLNNGRRPSTAPESSLGVKPPQSRPRSRPRRA
VSSTSSIIGEDA*
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mRNA from alignment at E_fasciculatus_S2_contig834:9271..14553+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig834.16475.1 ID=mRNA_E_fasciculatus_S2_contig834.16475.1|Name=mRNA_E_fasciculatus_S2_contig834.16475.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5283bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig834:9271..14553+ (Ectocarpus fasciculatus EfasUO2)
CATTGCTTTGCACTCTGTTGTGTCTCGAGGCTCATGCATCCCTTGTCGAG
GACCGAACTACACCACGCCGAACGAGGTTGAGGGGCGAGTTCCAGGGCAT
AGTTGCGCTAGACGACATCTCCTTCAACATGATTGCCTCCCGTGAGAGGC
CTTCGTCCTCGTTCCGCTCCTCCTCGGTGAGGCGAAATCACCTCGATCTA
CAATATCTGTTGCTCTCTCTCGGTCGTGCCTCAAAACGTCGTATGCATAC
TGCTGCAGTTTGATTTTCCATCTCACGAGGAGTAAAACATGTGCGCTGCC
GTCCTATGTAAACAAGTCGGTGTGCTGTTCCTGGTGCTCGCATGCAGGAT
CGTTTTCGTGACGTGGCATCATACCGCCAGGGCCGCTGCAGGCGGGAAGA
GAACGACTACCGAGACCTGGGTCCGGGCAAATACGATGGGTCGTCGATCA
TGGAGCTGCAACAGTCCCGCCCGAAGACCAGGGGAAGGTGCACAAACAAC
TCGAAATGTGGTTATGTATGTAGTACGCACGAATAATATGTCTTGTAATT
CTGAGAACTACATTTGTGTCTACCACGACCCATCGTAGCATAGACTACAG
TCCAGGAATCCGCGAAGTGGTGGAAAACCCTAAAAAAGCTAGTAGGTATC
AACATGTACGGCGGTGCTGTTGTATGTACGGTTGGTGTTCATTATGCCCA
AGTGTGCCCGTCAGGGTCACTCTGCTGCATTTACCGAGCACCCGGCCCTA
TTGGGATCTTCATTCAGATAATGCTCAATGACCCATGCCATTCGTCGTCT
GATCGACCAAAGTACTTTGTCATGGTGTTCAAAGCCCATCGCATTCGTGC
ATCGACCAACTGCCAGCCCCCACCAGAAACACTACACCGCACGCTGCAAG
TTCCAGGACGTCTTCCTATTGAACAGAGAACACTTCAAGTTAGTATGTGG
GCTATGCTGTAGAGCCTCCTTTTCCGAAATTTTTGAAACGAACGGATTGC
TTGGTCACATACGATTTGTAGTCTAACCGGCCTATTTTATTACGATGGGC
AAATGACACCACTAGCATAGCAAACCCTTTACACAGCGCGATATAGGCCA
GGCTGATTGGTCGAAACCTATATTCCACATTTTCACTGGCTACTTTCCTT
CGAAACTCTATAGTCTATGTTACCCAGATTTCCGGGAAAGCTTCTTGACT
TGGCCGGAGATGAGGTTTGTCCAAGGGTCAAATACGCGCAGGAATCCCTT
TCCGCTCCCACTAGGCACCCGAGTTTGAACCCCCCCGCCTGTCACCGGCA
TTGAATACACACGCTATCATTGGCAAATCCTTCCCCCCGGCAGCGACATG
CCGAGCTGAATAGATTGAGATACACGACCAACAAAAACGCCACGGACAAG
CTTTCCACTCAAAATACAAGCAGACCTTGTTTGCCCATCCTCGCACTTGT
CGCCTTAGCTCTCCCTTCCAAAAAGGCAGCTTGAGTCTACTGACTGTAGG
GCTTGCGGCACGTGAAGTAGTGGAGCAATTATGCAAAGGCCTCTCGCCGG
CGACGCCTTTCTCATGTTGAAAAACGTAGACACAAATACTATGTATGTAC
ATTCAACGGCTTGCAGGCTAAACTTGCCCATCACACCCCCCATACCCCAC
AACAAGCATTCTAGGGGGCAGTGGAGGTCACCGCTCTACGGTTCCGCGGG
CAGGGGTCAACTGGTACCCGGGCAGGAAAGACTACCCTAATTTAGGACCG
GGAGTATACCATCAGGCAAGTCGCTGTCCTGATTTCTGCTCGTTTCGGCA
CCACAACTTGTACGGGTTTTCTAAACGTTCGTCGGGCAGTGGAGACGTGA
ATAGGCAACGTTTTGGTACCATCCCCCTGCCCCTTATGAGCCTCAGAATA
TCATCCCCGGTCTATGCATGTTTCGGCGAACAGTTCGTACTTGCAGCGTA
GAACCTGATTCCACCTTCGGGGATAAACTTACTGCCTAGAAGAGACAGCA
AAGCATGGCGTTCGCAGCAGCAATCGGAAAGGACCAATGTCGAGTTCTTC
GATGAAGATGACATGAAGAACGCCGGATTTCCTAGATTTGGTAGATCCTT
GAGTGGCGGGCTGATCTCTAATGGACCAGTTCCCTTTGCACTGCAGGCGC
CACGCTCGTTCTTGGCCAAGAACGACGCGATCATGTTCCTCCCGGGGAGT
AGACGAGGCTTCCACTCCTTTCTCAACAGCGGGAGATCGAAGGTGCGGTG
TAGTTGTCCGAAGGCGGGCTTCGTGGACCGTAGAAATATTCGTTATGCCG
TTCTCGTGCCTTACACCACAGAAGGGCGAAGTTCTGTCGGGACGTCAACT
CGCAGCTTGGACCCTTGGCCATTGCCTCTTGCTCTCGGGGAATATGAATA
TGGAGTAGAGAGGAAATTTATCGTGCCACATGTGTGAAGGCGATGGATAC
AATAGCAGGGAAAGGTCAAACGTTTGAACTGAGACTAGAAGACATGCGCC
ACACGCAAGGGTCGACCTGCTGCAAGATCTTTCGAGCCGTTACAGAACGG
AGAGTATTTTCAAGGACTTCCGAAAAGAGGGCGTCAAGGGGCCTGGCAAA
GGGACACCAAGCCCGCTGTTTTAATAGAAAATATCATCTCTTCCGGCAAC
TCGTACCTTGTTCAACAAGGAAGTGGTCAAATCGAAATTTGCGACAGGTG
AAAAGCTTTTGCCACTTTCACGCGTATCTCTGTTCTTACCAACGTGTAGT
CCGGCTCTCAAGGGACTGGTAGAAGACGACCAGGCTGTGCAGCAGCTCCA
TCGTGCACAAGCCTCTACCGAAGGCTCAAAGTCAACAGCACAGTACGACC
ACAACTGTTCTCTATCAGTTGGCACTCTGCGTTGGGAGTTGGTACTCTTC
CGTGTACGACCAAAGACTAGCAAGAAACAACCGCGTTCTGGGTTTTGTCT
CATCCCAGACGTTTCCGTGTGCCCCGGGGTTTGAGCAGAGGCTGATGGGA
GACGCTGTTCTGTTCAAAACAGCTAGGGCTGACGGTGAACATCTCGGGCC
AGGATCGTACGACCTACCTCCCACCCTCAACAATGGTGAGGATGGCGAGC
TTCTCCGCAGCACAGAGTAGGGACGGTAACGATTGTAGGTACCGTCAGGC
GACATCGACAATACCAGTAACCCCTATTCCGTATCTTCGTCCCACCTGTT
ATTTTCCGAGTAGGGCGATGCATGCCGCTTTCGGTAGTAGCGCGGTGAGC
ACAAACACTCTCTGGGACAAGCGTGGCACCCCCTGCCAAGCCGGTGGGAA
CACTCGTTTCATGGCTTTCCGACTGTTAGCTCGTGTGGTGAACGCTGGTA
CTGCGGGACATAAACATCTCGTGTAGCCGCCGCCGCCGCTCTAGATCTAC
CTCTTTGAGCGTGACCGATGCCTTGCGCTGTCACTTGGGAAACATTCGCA
CCTGTGTTTCTCACCGACTTCATCATGCTGGATCGTTTTATTTTTAGCAT
CCTTTCAGCTTGAAGTGTAGGGTGCTAAATACAGATCATCTTCTCATTTT
AAACTGCTTTTCTTTCCCTATCTTCCCTGTCTGGACCTCTATACTGCAAC
CATATTTTCCAACATGGGCAGGCCGTAGACCCAGCACGGCCCCGGAATCA
AGCTTGGGAGTCAAGCCGCCACAATCCCGTCCCCGTTCCCGACCTCGGCG
TGCTGTTAGTTCAACGAGCTCTATTATAGGGGAGGATGCTTGAAAGGGGG
TGTGGGAGCGGACGCGAGGTTGTACATGGAGGAAGAGGAGGAGCGTGCGG
CGGCCGTCAACGCCGTCCGAGGTGCGTGTACTCCTCTTTCCCTCTGTTTC
TTGAATTAGCTTCGTGCACGACTCCTGGATCGTGCTTTGTTTGAGAACCA
CGATGACAACGGAGTTAGCGAGAGGATGGACTCTAGTCGGCACTATAGTT
CAGGTATCGATATTTCGTGTTCGTAGTAAGTCACACCTGTGTAGCCCGTG
TTTGTTGCTTCTGATGCTCGATCTAAGCGGAACGTATCCTGGAACAGTTG
GTATGAGGACAAGGCAAATTAACCGCTACGCCAACTCTGTAGATAAAACG
ATTGCGGAGAGTCTGCAATTTTTCTGCACCGGCTATTTTTGAAAACGTCA
CACTCTTTAGCTGTTTTTCCTCGGGCCACGCCACTGTGTTCCGCCCTCCC
ACCAATCGAATGGGCGCAAGGAAGGCGTCGCCGTTGACAGTAGAATCAGC
AGACGACGCTCGAGGGTAGATGAACAACACTCTGTTGTATGCTCCGGCAC
ACCAATACGCCCTTTTCAATTTGCTGTCCCTCCGTGACGGTATGTTCTTG
TTTCCCCGACAGCTCTCCCAGAACTGCATGTACGTTAGCGCAAGTCAGAG
TGGCCTGGCCAAATTTTCGTCACACGGCGGATGCCGATGCTGACGCACTC
GTACGGTCGGTATGCCAGCGCTACCAGCGAAAGTTGTAAGGAAATCGAAG
GAACCAAGTGCTCAAGGGAGTGGTAATCAAGGCAGGCAACCTCTGCAAAC
CTTGCAAGCATCCACGTATTGGTCGTAGGTCTAACGGCGTAGATCCTCGT
GTTCATTAAACTCGCACAATCGAGGTGACGGGTTGGATTTAGTCGTGTGG
CCGCATGCAAGGAGGGAGGTATTGTTGGAAATGCGGCTGCAGGGCTTGGC
TCGAGCGAGCCAGGTGCATTTGGACAGAGGCCCTTGACAGGCAACGACGC
CTAAACAAGCCGTGACCTTCTCCAACCGGGCTACCTATAGGGCGAAGCGT
TCGTACCTTGTCGTTTGTGGAATGGCGAGGCTAATATAAGAAATTCTACT
CCCGGGGCACCCATGGCAACTGCCGTTTTGACGCAGGGTAACACCCAAGG
TTTTTGGCTCGGAATTTTGCTCGTTTGACAAATGCTTTCTCTTCTTGAGG
TCAACACTTAAGACGCGGCAGACTTTGGCTGAGTTGCCCTCTGTGCTCGC
TTCTATTGTTCGATGGAATCGGGAGGATGCTGAAACACGGGAGATGCTGT
TGCGCAGAGTATGTCGCTTGCCTCCTCCGTCTGATTCCCATCTTTCCGTA
TTACTGTAGTTTGGTTGTTGCGGATTTTTGCTAGAACGGGGAAACAATTG
TCGCGATTTTGGTCCCGAAAATGACGCGGGGATGGTAAAATGCAAAATGT
AAACAAACGTGTAACGTTCGATTTTGGGACCTGCATCCGACGCTGTCGAT
GGTGCTGCTTTTCTACTCTGGTCGGCCCACTCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig834:9271..14553+

>mRNA_E_fasciculatus_S2_contig834.16475.1 ID=mRNA_E_fasciculatus_S2_contig834.16475.1|Name=mRNA_E_fasciculatus_S2_contig834.16475.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=639bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig834:9271..14553+ (Ectocarpus fasciculatus EfasUO2)
ATGATTGCCTCCCGTGAGAGGCCTTCGTCCTCGTTCCGCTCCTCCTCGGA
TCGTTTTCGTGACGTGGCATCATACCGCCAGGGCCGCTGCAGGCGGGAAG
AGAACGACTACCGAGACCTGGGTCCGGGCAAATACGATGGGTCGTCGATC
ATGGAGCTGCAACAGTCCCGCCCGAAGACCAGGGGAAGCATTCTAGGGGG
CAGTGGAGGTCACCGCTCTACGGTTCCGCGGGCAGGGGTCAACTGGTACC
CGGGCAGGAAAGACTACCCTAATTTAGGACCGGGAGTATACCATCAGGCA
AGTCGCTTTCCCTTTGCACTGCAGGCGCCACGCTCGTTCTTGGCCAAGAA
CGACGCGATCATGTTCCTCCCGGGGAGTAGACGAGGCTTCCACTCCTTTC
TCAACAGCGGGAGATCGAAGAGGCTGATGGGAGACGCTGTTCTGTTCAAA
ACAGCTAGGGCTGACGGTGAACATCTCGGGCCAGGATCGTACGACCTACC
TCCCACCCTCAACAATGGCCGTAGACCCAGCACGGCCCCGGAATCAAGCT
TGGGAGTCAAGCCGCCACAATCCCGTCCCCGTTCCCGACCTCGGCGTGCT
GTTAGTTCAACGAGCTCTATTATAGGGGAGGATGCTTGA
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