mRNA_E_fasciculatus_S2_contig8322.16465.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8322.16465.1
Unique NamemRNA_E_fasciculatus_S2_contig8322.16465.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8322.16465.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Y9_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 6.160e-7
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:  175 TDAASSDSRPTFNKKMRKPSMRFGRAGAS 261
            TDAASSDSRP FNKKMRKPSMRFGRAGAS
Sbjct:    2 TDAASSDSRPMFNKKMRKPSMRFGRAGAS 30
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8322.16465.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized6.160e-796.55protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Y9... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8322contigE_fasciculatus_S2_contig8322:3315..6325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size266
Hectar predicted targeting categoryother localisation
Exons3
Cds size180
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842492.3612835-UTR-E_fasciculatus_S2_contig8322:3314..33981696842492.3612835-UTR-E_fasciculatus_S2_contig8322:3314..3398Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8322 3315..3398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842492.372625-CDS-E_fasciculatus_S2_contig8322:3398..34461696842492.372625-CDS-E_fasciculatus_S2_contig8322:3398..3446Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8322 3399..3446 +
1696842492.383074-CDS-E_fasciculatus_S2_contig8322:5387..54941696842492.383074-CDS-E_fasciculatus_S2_contig8322:5387..5494Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8322 5388..5494 +
1696842492.3935163-CDS-E_fasciculatus_S2_contig8322:6300..63251696842492.3935163-CDS-E_fasciculatus_S2_contig8322:6300..6325Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8322 6301..6325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8322.16465.1prot_E_fasciculatus_S2_contig8322.16465.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8322 3399..6325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8322.16465.1

>prot_E_fasciculatus_S2_contig8322.16465.1 ID=prot_E_fasciculatus_S2_contig8322.16465.1|Name=mRNA_E_fasciculatus_S2_contig8322.16465.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=60bp
MDPSSRRRTSVDGNLRASLATAGGRRGSGTTDAASSDSRPTFNKKMRKPS
MRFGRAGASS
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mRNA from alignment at E_fasciculatus_S2_contig8322:3315..6325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8322.16465.1 ID=mRNA_E_fasciculatus_S2_contig8322.16465.1|Name=mRNA_E_fasciculatus_S2_contig8322.16465.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3011bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8322:3315..6325+ (Ectocarpus fasciculatus EfasUO2)
GCTGACTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGCTGGCA
AGGAGAGCGCGGAGAGGGCGATGCTAGAGTTGCGATGGATCCCTCATCTC
GCCGCCGGACAAGTGTTGATGGGAATCTGAGGGTAAGAGACAGAGAGAGA
GAAGAAGCGGAGTTTGTTCCAGTAGAGGCCAGAGTGCACAAATGATCGAC
GTTCGCTGCTGCTGCTGCTGTGTCTCGCTGTCGGCTCTGCTGCTGGGACG
TTCGCACCCCAACACTGCAGTCGTGGCAAAAACAAGCCAGCAATATGCAC
ATTGCTGTACCGGGAAATGTATCTCTACAAGGAGTGCTACGGAGCTGGTT
GTCGGCAGCAACTACAGTACGGCTGACCTGCAATGCGGATGGCGCAATGT
TCCAGCGGGTTCTGCTGTACTGCTTTGTGCGGGGGAGCCTTTGCGTCCCA
ACGCCACACCTCCGGTCAGGGATACAGCGTTTGACGCTCAAGAAGCAAGA
GGGTTTGGAGTACGTAACTAGAACGACGTGACAATTTGCGTAAGCGCCAT
TTGCAAATAGGTGCGACAACTCGACAACTATTGAATCTCTAATCTCTTAA
ATAAATGGGCGTGTGCTCAAATCACGCCGCATTTTCGTGTTAACCGCCAT
CAACCATGTTTGACATCCGTCAACATCTTGCACAAGGTGTGCCGTGCACC
ATGGTGCGAGGTTAGGGGTGAAATAGTAAAAGTGAGGTACGTGCATGCCC
CAAAGATCGACACGCCAGCAGTACTTGGAGAACCGATGCATTGCCGTGCA
TGACTACTTGGCTTTCCCCTAGTACACTCCCGCCTGCTCTTATGTGCCTC
GGACGGACAATGCCCGACCGTCGCTCCTGCTGCGGATTGTGTACGTAGCG
TTCAAGTTCCACATACATCACGTTTTTTGGTACCTGAAGTAGTCGATGTG
ACTGCTGCTGGTGTTGTTTCCTTGCGAAAAACATTCAGAGCCCGTGAGCA
TTTCGTAACAATGGGGAAGGGCCCCAGCCCTGCTTCCGTGGATGTACTAT
AATAGCAGACGTGTAGTCATGGCCGCATATACTTCTACAGCACCAAACCA
TGCCATAGGTTTTTTAAAGAATAATACAAGTACAAACACCGAAAGACTAC
CCGTTCGAGAAATAGGTTTTGACACAAACCTACAAACGCTGCACAGGCAT
GCCACCAAACGACCACCTTCTGTTAGTTTCCCCCCAATTCGTCCCCTAAG
ACGAAAACAATACCTCCGGTGCTCGTGGGGTACCGTTAAAGGCGGAGAGA
TGGCGCCCGCCCTAGACGATTTTTTCACAGCTCGATTGCCCCACGACCAA
GATGGTGCCAACGCTAAAAATGATGGTTTTAGACACATCTCGTCTTAGGG
CTTTCCGTAGAGTTATCGGGCTCTTTACGCACCCCCTCGGCTGTGGAGCA
ATCTAATCTATCGAGCTTTGAGAGTCGGTGTAGGGAGGGGTGCCATCTCT
CCGCCTCTTCCGTAAGCTCTTGATGACATCTCCAACAAAGACGGTGCGCA
CCCAGGACGTACCACCATTTCTTCTCTGCACCACGACCCCCTTCCCTCCC
AATGACCAATGACTATTGAGCATCAACACACAACCCCGTCGGGACCCGAG
GCCCGAGCGCCTAGTCGAGAGAGAGAGAGGGAGAGAGAGCACACACCGTT
ATGCCGTCTGCAAACCCATATAATTTTTTTACGGCAGGGGTTCTATCGAT
TCACAACACGACAGGGGGCACACCCGAGACTACTTCAGAACCCGCCGCGG
ACAACACAGACAGCTTGAAGCCTTCGTGGCTTGTTTTTCCCGTAAATCTG
TGTCCCGGATAACAACGCTGGAAAGACTTTTGTGGGTTGTTTTATGCCGT
AAACTTATGTCCTGGTGAAAGTCGCTCACAAGACACGCCACATTTCATTT
TTCGTCCTTACGTTGCACGTCATCCCTCCGCTGCCCCGCGTTTATCCCGC
CGTCTCCTTATCATGTTCTTGGCCTTACCGAACCCAACCCCACATAACCA
TGTGTGCAATTTGTTGCCAGCAGGCCTCGCTCGCGACCGCCGGAGGGCGG
CGCGGGTCGGGGACGACAGATGCGGCGTCTAGCGACAGCCGACCAACGTT
CAACAAGAAAATGCGGAAGCCGTCGATGAGGTACGTACATGCGCTACCGG
TTTGGAGGGGGGGGGGGGAAGAAAAGGTTGGGCTACCAGCAACAGCCAAC
AAACGTAAAAAAAGAAAATGGGGGGGGGGTTGAGGGGGGTGTTGTTTTGG
TTTCGGGTGGGGGGGGGGGGGGGGGGGCTCTTGTGCGCAGATCAACGTCG
TAGGAGGTGACTCACTGGCTCTGTACGTTTACCGGTGATCCCAACCACAT
TAATTAAAAGCGGCGTAGCGGTAGTGGCAGCATGGTCCGTGCTACAGTAA
TTCCACCGGCCTATATCGCCGACGGTTGTATCTAGTCACAGGGGTATGTT
TACGGCACTGCAGGGTTAGTTGAGCACGTTGCCATTGCCGAAGGCCTACC
CGACAACTGACTCGGCCTGTTCGGCGGCACCCTCGCCGGAGTCAAAATCC
TAGCCTACAGGAGTAGAGCTTGTTGTTGTTGTCGTCGTCGTCGTCGTCGT
TGTTGTTGGTGTTGTGTTGCCTTTGCGGTAGACAGCACACAGGCAATGTT
TTAAATCACCGAACCTAAAGAGGGGGGATCGATCGCCGCTAGATGACCAA
CCAGCGCGCACAGAATAGACAACTACGGGACATACTAGTGTACTTGACAT
TGTAGTCCGAATTTCTTGTCCGAGGCAACTTTCGAATGCATTGATACGGT
TCGGTTTGTCCTTTGTTCTATGGTAAAAGTCTTGAGCTACGGTTTGGTTT
CACCCTAACACCCCGTCCGCCAGCCCGACTGGGCAATGTCTTATCATTGG
CTCGATAAAACTAACGTTCTTGTAATTTTGTCGCAGGTTTGGTCGTGCGG
GCGCTTCCTCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8322:3315..6325+

>mRNA_E_fasciculatus_S2_contig8322.16465.1 ID=mRNA_E_fasciculatus_S2_contig8322.16465.1|Name=mRNA_E_fasciculatus_S2_contig8322.16465.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=180bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8322:3315..6325+ (Ectocarpus fasciculatus EfasUO2)
ATGGATCCCTCATCTCGCCGCCGGACAAGTGTTGATGGGAATCTGAGGGC
CTCGCTCGCGACCGCCGGAGGGCGGCGCGGGTCGGGGACGACAGATGCGG
CGTCTAGCGACAGCCGACCAACGTTCAACAAGAAAATGCGGAAGCCGTCG
ATGAGGTTTGGTCGTGCGGGCGCTTCCTCC
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