mRNA_E_fasciculatus_S2_contig8316.16460.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8316.16460.1
Unique NamemRNA_E_fasciculatus_S2_contig8316.16460.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8316.16460.1 vs.
Match: PAS (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN98_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 5.090e-39
Identity = 78/150 (52.00%), Postives = 103/150 (68.67%), Query Frame = 1 
Query:  154 NRLHCKETRQRKRKQEQLLREEVSILELCKSIVEHGPDLFSIHGSHTTAPFRFLCEDFGERLQMAPKEFLGRPLASIVDPQDAAILENAVARVLATACDGTGATSTLTDSSDRAKGCLIDVRVTRHGLSCPAAMSISMGSHGLVVVTRLY 603
            NR+HC+ETR+RKR+ E LL+EEV IL L K++VE GPDLFS H     APF F CE++  +LQ+AP++ +G+PLASIVDP+DA IL  A+  VLA          T    S+   G L+ +RV+   +SC A+MS+ +GS GLVVVTRLY
Sbjct:   24 NRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFACENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLAN--------KTNIGDSEPGSGKLVKLRVSCGSISCSASMSMVIGSQGLVVVTRLY 165
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BLAST of mRNA_E_fasciculatus_S2_contig8316.16460.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF4_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.020e-35
Identity = 73/152 (48.03%), Postives = 99/152 (65.13%), Query Frame = 1 
Query:  154 NRLHCKETRQRKRKQEQLLREEVSILELCKSIVEHGPDLFSIHGSHTTAPFRFLCEDFGERLQMAPKEFLGRPLASIVDPQDAAILENAVARVLATACDGTGATSTLTDSSDRAKGCLIDVRVTRHGLSCPAAMSISMGSHGLVVVTRLYRS 609
            NR+HCKETR R+R++E+ L E V +L+LC+SIVEHGPDLFS+H +   APF +LC++F  RLQM P+  +GR L SIVD ++A  L NA+ +VL  A                    ++ VR+    + C A+MSI+ GSHGL+VVTRLY S
Sbjct:   29 NRIHCKETRDRRRERERALSEHVELLKLCQSIVEHGPDLFSLHNATIDAPFSYLCDNFTMRLQMPPEAMVGRSLLSIVDEREALSLRNAIFQVLNEAQHXXX----XXXXXXXXXXAVVHVRIAHGQIFCEASMSIACGSHGLIVVTRLYSS 176
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BLAST of mRNA_E_fasciculatus_S2_contig8316.16460.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA0_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 6.270e-16
Identity = 49/153 (32.03%), Postives = 76/153 (49.67%), Query Frame = 1 
Query:  214 EEVSILELCKSIVEHGPDLFSIHGSHTTAPFRFLCEDFGERLQMAPKEFLGRPLASIVDPQDAAILENAVARVLATACDGTGATSTLTDSSDR------------------------AKGCLIDVRVTRHGLSCPAAMSISMGSHGLVVVTRL 600
            +E  +LE+ + IVE+GPDLFS+HG+   APF F+ +    + Q+  +  LG+PL ++VDP D  +L  A+  VL       G +    D                              G ++++ V   G SC A+MSI++G  GL+VVTR+
Sbjct:    8 QEEDVLEVYRDIVENGPDLFSLHGTTLDAPFSFVSKSLNLKFQLPSEYLLGKPLKTVVDPDDWGVLTTALLAVLGPNPTSGGKSGNSRDGGXXXXXXXXXXXXXXXXXXXXXXXVAVGSGTVVELNVMCGGASCLASMSIALGCRGLIVVTRM 160
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8316.16460.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L6_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.260e-10
Identity = 34/43 (79.07%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:  343 MAPKEFLGRPLASIVDPQDAAILENAVARVLATACDGTGATST 471
            M P EFLGRPLASIVDPQDA IL+NAVARVL +ACD  G TST
Sbjct:    1 MEPVEFLGRPLASIVDPQDADILKNAVARVLDSACDNNGTTST 43
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8316.16460.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
PAS5.090e-3952.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.020e-3548.03protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.270e-1632.03protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.260e-1079.07protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8316contigE_fasciculatus_S2_contig8316:2837..5718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size612
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_000130.1
Cds size612
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842491.927986-CDS-E_fasciculatus_S2_contig8316:2836..29781696842491.927986-CDS-E_fasciculatus_S2_contig8316:2836..2978Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8316 2837..2978 -
1696842491.942222-CDS-E_fasciculatus_S2_contig8316:3928..40901696842491.942222-CDS-E_fasciculatus_S2_contig8316:3928..4090Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8316 3929..4090 -
1696842491.9521966-CDS-E_fasciculatus_S2_contig8316:4670..47621696842491.9521966-CDS-E_fasciculatus_S2_contig8316:4670..4762Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8316 4671..4762 -
1696842491.9622912-CDS-E_fasciculatus_S2_contig8316:5502..57181696842491.9622912-CDS-E_fasciculatus_S2_contig8316:5502..5718Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8316 5503..5718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8316.16460.1prot_E_fasciculatus_S2_contig8316.16460.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8316 2837..5718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8316.16460.1

>prot_E_fasciculatus_S2_contig8316.16460.1 ID=prot_E_fasciculatus_S2_contig8316.16460.1|Name=mRNA_E_fasciculatus_S2_contig8316.16460.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=204bp
MGGEIGAQVPSVPSVEIASCQALADSSKSNSGTNSSGDSGGDAIRDALRE
ANRLHCKETRQRKRKQEQLLREEVSILELCKSIVEHGPDLFSIHGSHTTA
PFRFLCEDFGERLQMAPKEFLGRPLASIVDPQDAAILENAVARVLATACD
GTGATSTLTDSSDRAKGCLIDVRVTRHGLSCPAAMSISMGSHGLVVVTRL
YRS*
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mRNA from alignment at E_fasciculatus_S2_contig8316:2837..5718-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8316.16460.1 ID=mRNA_E_fasciculatus_S2_contig8316.16460.1|Name=mRNA_E_fasciculatus_S2_contig8316.16460.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2882bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8316:2837..5718- (Ectocarpus fasciculatus EfasUO2)
ATGGGTGGAGAGATCGGAGCACAAGTTCCTTCCGTTCCCTCGGTGGAGAT
AGCGTCGTGTCAAGCTCTGGCAGACAGCAGCAAGAGCAACAGCGGCACCA
ACAGCAGCGGTGATAGCGGTGGTGATGCTATCCGCGACGCTTTGCGTGAG
GCGAACCGCCTCCACTGCAAGGAAACGCGTCAGCGAAAGAGAAAGCAGGA
GCAACTTCTGCGCGAGGTGCGGTAGTGTAGTTATCCGAGTGCTTCGAAGT
CCATACATTGTAGCAAGATCGGCAGATCAGCCAGCGGCGAACGATGAGAA
AAAAAAAGGAACATCTCCTACATAGTCTATACCTGTAACCATGCGTGATA
TGTACACCAGCGTGTTCGATCCTTACATATTCTGTACCTTCACAAGCGCT
GGGGCGGTACATGAGATCCTCGAAGAATATTATGATTGACTCGGATGATG
TGGAGGTATGTTTTGGGAACGCTCTCTGGCGGTCTTCGTCTAGACTAGGG
CCCCAAAAGCAATGTTCATGTGTTGACAAAGCGCTCTTTGTCTAGACTAG
TCTACTGAAAGTTTTCCAGAGGAACTCGGCACATCAGCTCCGAGGTATGA
TCTGTATGTACCTCAACCCTCGCGTATTGGTCGAGATTGCAATTTGTGTA
CATGAACAGAACGGCGTAAACAGAATGCTTATTACCAGTGTAGATGTGCC
AGAGGCAGGCGTGATCGATCTCCCAAAGCACCCGACCCAAGCAACTCGTG
AACGACGTGAACCTCAACTGCTGTCTCCCAGCCAGCCCGAAAATGGTTCC
AGGCCCCCTGTCAGCAGCTGCACCACGTAGCTTCTACTACAGCCACCACC
GAAATAGATTCGACACAAAACACATCAACTGCAGCTGTGGTCTCTTGTAA
CAACAGGCACAAACGCATCAACAAATTATTTTTCGCGCGCTCTCTTCATG
TGTCAGGAAGTGAGCATCCTGGAACTGTGCAAGTCTATCGTGGAGCACGG
ACCGGACCTGTTCTCTATCCACGGCTCTCACACGACCGCGCCGTTCAGGT
TGGTGACCACACGCCGTGTGGCTGTCGCGTGTTATTGCTGATCACTGATT
CGAACGGACCGGGAGATCAGAATCTTCAACTTGTCATCCAAATACCGAAA
AAACAATTAATAATGAATATACATACACTTTTTAATATATTTACCGTTCA
CGAAGCGATCGGCTTGTTTTACACCGCTTGTGGTCGAGCCTTATTTTCAG
ATCCTCCCATCGGTGGCCCCAAGAAGCAGCTGACGTGAGCTGATCCATTC
CCTCAGTGCCGCAATCGGGGTTCTCAAAGTGTTTAGACCACATTGAGGAA
AGAAAATGCAGGCATGCGCGGTTCGGTAGTGTCAAGTCTTCACAGCAATT
GAAGAATTCATGCAAAATCGCACGCAGGGGTGCGCCACAGGTGTTCTCCC
GCGTGTTCCAACTCTCGTTCGTGATCCTTTTCGAATACCCTTTTTTACTC
ATGAAAAAGAGCCACGCTTGCAACACAAAGGAGAGGAGGCATGCGAAATA
TTTTCTCCCTTCTCGATAGACCATGGTAATCGTTGCTGACCCTCGAAAGG
ATGCTGCTTTCCCACGGTGACCGACCAGGTTCCTGTGCGAAGACTTTGGC
GAAAGGCTGCAGATGGCACCGAAGGAGTTCCTCGGAAGGCCGTTGGCAAG
TATTGTGGACCCACAAGATGCAGCTATTCTGGAGAACGCTGTTGCGCGAG
TACTGGCGACAGCCTGCGACGGCACTGGCGCCACCAGCACGTGAGATATT
TTGCCAATTACATGGAAGATGCAAGTCAGACAGACGCTCGTACTCTGTTT
CGATACTTTGCAAACGTGATGCAACCTCCGGAACTCTCGTGGCCGCTCTC
ATTGTGTATTATTGCTCGACAGATGGCCATGGCGAAGAAGTACGCCCTCT
GATTGGGAGATTTTTGCATGCGGCCATCCCAGCAGTTTCTTTCAAACACG
TGATCGAAGGGACCACGCAGTGTCCTTTGACATCTAGTCTATACCGTACA
TATACCAAATCTATGCGTGATCGTTCGAGAGAAGTACAACTCGGGCCCGA
TATTTTTCGAATGAATGTGATGCTCGTCCGTCTCCGGGTACACCAAGAAA
CGCGAAGAGTTGCCTGGGAATGAATGTGGCTCGTACCGTTGTCGTCAGAG
TGCGTCAAAGGGCAAGTTCGTGCGGGTATCAGATTCATGCGTTGGGAACT
GACACCTTGCCAAGCGGCCGTAAACAGGATCGATCACGCCGTCATTCTTG
GTGTCTAAAGCGACCCCGAGACCTTGTGACTCTTTACTTGGCCCCACTAC
CGTACATCTATCCATGTCGTGCCCTGAGCGGTCGATGGGGCTTGCGTGTG
CATGAGAGTCGGCACTCAGGGCATCGAGTAAGTTTTTTCGTCTGGGGCAG
GTGCCATCTCCTCATAAGCACTTCAAATCAAGTCCATTCGAACCCAAGGC
AAAAATTTGATACTTCTACGACATGCAGTCTCTCGCAAGGCGAGCAGATT
ATATTTCGCCGGAAGCTGTGTAGACTAGTTGATGGAATGCATGACGCGGA
TTTATTTCCATAAACGTGTGGTCTGAACGCCGAGTGGTTTGGTCTCCCGA
GGTGAAAATCAATCCTTGGCGATGTGTCACAGCGCCCCCCCCCGCCGCCT
GACGTGCTGCCTTGGACTGCATGCTCCATCCACTCTGCAGCCTGACCGAC
TCTTCTGACAGAGCAAAAGGGTGCCTCATCGACGTTCGCGTGACTAGACA
CGGGTTGTCGTGCCCGGCAGCAATGTCCATCTCGATGGGAAGCCACGGTC
TTGTCGTCGTCACTCGGCTGTATCGGTCATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8316:2837..5718-

>mRNA_E_fasciculatus_S2_contig8316.16460.1 ID=mRNA_E_fasciculatus_S2_contig8316.16460.1|Name=mRNA_E_fasciculatus_S2_contig8316.16460.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=612bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8316:2837..5718- (Ectocarpus fasciculatus EfasUO2)
ATGGGTGGAGAGATCGGAGCACAAGTTCCTTCCGTTCCCTCGGTGGAGAT
AGCGTCGTGTCAAGCTCTGGCAGACAGCAGCAAGAGCAACAGCGGCACCA
ACAGCAGCGGTGATAGCGGTGGTGATGCTATCCGCGACGCTTTGCGTGAG
GCGAACCGCCTCCACTGCAAGGAAACGCGTCAGCGAAAGAGAAAGCAGGA
GCAACTTCTGCGCGAGGAAGTGAGCATCCTGGAACTGTGCAAGTCTATCG
TGGAGCACGGACCGGACCTGTTCTCTATCCACGGCTCTCACACGACCGCG
CCGTTCAGGTTCCTGTGCGAAGACTTTGGCGAAAGGCTGCAGATGGCACC
GAAGGAGTTCCTCGGAAGGCCGTTGGCAAGTATTGTGGACCCACAAGATG
CAGCTATTCTGGAGAACGCTGTTGCGCGAGTACTGGCGACAGCCTGCGAC
GGCACTGGCGCCACCAGCACCCTGACCGACTCTTCTGACAGAGCAAAAGG
GTGCCTCATCGACGTTCGCGTGACTAGACACGGGTTGTCGTGCCCGGCAG
CAATGTCCATCTCGATGGGAAGCCACGGTCTTGTCGTCGTCACTCGGCTG
TATCGGTCATGA
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