mRNA_E_fasciculatus_S2_contig8313.16457.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJI7_ECTSI) HSP 1 Score: 272 bits (696), Expect = 1.080e-84 Identity = 158/192 (82.29%), Postives = 158/192 (82.29%), Query Frame = 1
Query: 70 AGKREDG-YVDDDAASLSPLGEGIPLGGGGTAAAAVGAGNPTATSSG---------RRVRSSRKALSPAPAPPVPPVAGIEKAKRAPIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVR 615
AGKREDG DA SLSPLGEGIPLGGG TAA RR RSSRKALSPAP PVP VAGIEKAKRAPIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVR
Sbjct: 359 AGKREDGGXXXXDAGSLSPLGEGIPLGGG-TAAXXXXXXXXXXXXXXXXXXXXXXXRRTRSSRKALSPAPPVPVP-VAGIEKAKRAPIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVR 548
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K923_9PHAE) HSP 1 Score: 244 bits (622), Expect = 2.410e-72 Identity = 137/184 (74.46%), Postives = 139/184 (75.54%), Query Frame = 1
Query: 64 EGAGKREDGYVDDDAASLSPLGEGIPLGGGGTAAAAVGAGNPTATSSGRRVRSSRKALSPAPAPPVPPVAGIEKAKRAPIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVR 615
EGAGKREDG DD + SL PLGEGIPLGGG V GIEKAKRAP+RFYLVREGHRFVPVGRNPKKGAWKELPEVAIP ARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVR
Sbjct: 528 EGAGKREDGCGDDGSDSLPPLGEGIPLGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXVVGIEKAKRAPVRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPTARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVR 708
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Chloride (channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU91_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.340e-16 Identity = 45/106 (42.45%), Postives = 69/106 (65.09%), Query Frame = 1
Query: 295 APIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCV 612
A +RF +V+ G + PV +G + + + ++IP+V+DPSP QV+H+TEL K+D FR+L+LD A+VC AG+LVG +TR + FV RE P+D+C+
Sbjct: 631 AHLRFVVVKGGGKVAPVVDT--RGTAYCMQHMLRLTSIDTIPIVMDPSPLQVAHSTELRKLDYMFRMLKLDIAFVCRAGKLVGWVTRGTIRRFVGAREPQPIDECI 734
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKC7_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 1.610e-13 Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 1
Query: 301 IRFYLVREGHRFVPV---GRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCV 612
++F + G + VPV R+P P +++P LD SPYQV T LSKVD+ FR+L++++AYV AGRL+GVITR+ L + + D+E P+D C+
Sbjct: 79 VQFIIYDNGTKPVPVMGTRRSPNNLLTGYSPLLSVP---------LDTSPYQVLDTMHLSKVDLIFRMLKVNHAYVTRAGRLIGVITRQRLREHLGDKEKRPIDSCL 176
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Chloride (channel protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UA92_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 3.960e-13 Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 1
Query: 418 PVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDCVR 615
P+++DPSPYQV T LSKVD +FR+L++ AYV +GRL+GV+TR++L +FV RE PM C++
Sbjct: 845 PLIMDPSPYQVGDRTLLSKVDFSFRMLKVTQAYVVRSGRLLGVLTRDSLTEFVGTREKKPMHRCLQ 910
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GUG0_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 8.790e-12 Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1
Query: 415 IPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMD 603
I V LDPSPYQ+ + LSKVD+ FRLL L+ AYV N+GRLVGV+TR L D++ P D
Sbjct: 94 IAVPLDPSPYQIVDSMHLSKVDMVFRLLSLNQAYVTNSGRLVGVVTRSLLRDYLGGHRKKPTD 156
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A6T5VIZ2_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 9.340e-10 Identity = 38/120 (31.67%), Postives = 63/120 (52.50%), Query Frame = 1
Query: 301 IRFYLVRE-GHRFVPVG----------------RNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDC 609
I++ L+ + G+ F+PV RN + +W + S V +DPSPYQ+ T +L+KV++ FR+L+L+ AYV GR+VG+ITR + ++V P ++C
Sbjct: 190 IQYVLISDDGNSFIPVASTSAVASSHTPSNKRLRNNRLSSWAAM----------SYAVAIDPSPYQIVDTMQLNKVNVIFRMLKLNQAYVTRNGRVVGIITRSIMREYVSKYVKKPAENC 299
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CAK7_PYTOL) HSP 1 Score: 63.9 bits (154), Expect = 2.200e-8 Identity = 27/57 (47.37%), Postives = 43/57 (75.44%), Query Frame = 1
Query: 406 RESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFV 576
R + V++DPSP+Q+ T + +VD+ FR+L+L+NAY+ +GRLVG+ITR+ L F+
Sbjct: 769 RTKLTVLIDPSPFQLMEMTPMKRVDLLFRMLKLNNAYITRSGRLVGLITRDRLMTFL 825
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Hypothetical (protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNS7_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 2.260e-8 Identity = 41/106 (38.68%), Postives = 60/106 (56.60%), Query Frame = 1
Query: 292 RAPIRFYLVREGHRFVPVGRNPKKGAWKELPEVAIPAARESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFVDDREVSPMDDC 609
+A +RF ++ G R VPV + + L A+ +I V+LD SPYQ+ T +L+KVD+ FR L+++ AYV +G LVGV+TR L + PMD C
Sbjct: 849 QAVLRF-VINHGGRAVPVATSSTQTNLSPLF-----ASCPNISVLLDTSPYQILDTMDLAKVDLIFRTLKVNQAYVTCSGVLVGVVTRARLRKVLAQDAKEPMDRC 948
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Match: Glyco_transf_28 (domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C2U2_PYTIN) HSP 1 Score: 63.2 bits (152), Expect = 4.330e-8 Identity = 27/57 (47.37%), Postives = 43/57 (75.44%), Query Frame = 1
Query: 406 RESIPVVLDPSPYQVSHTTELSKVDIAFRLLRLDNAYVCNAGRLVGVITREALADFV 576
R + V+++PSP+Q+ T + +VD+ FR+L+L+NAY+ +GRLVGVITR+ L F+
Sbjct: 1384 RTKLTVLINPSPFQLMEMTPMKRVDLLFRMLKLNNAYITRSGRLVGVITRDRLMTFL 1440 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8313.16457.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8313.16457.1 >prot_E_fasciculatus_S2_contig8313.16457.1 ID=prot_E_fasciculatus_S2_contig8313.16457.1|Name=mRNA_E_fasciculatus_S2_contig8313.16457.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=205bp MDEGRSGATPPPPPPPPPPGVEGAGKREDGYVDDDAASLSPLGEGIPLGGback to top mRNA from alignment at E_fasciculatus_S2_contig8313:4933..6131+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8313.16457.1 ID=mRNA_E_fasciculatus_S2_contig8313.16457.1|Name=mRNA_E_fasciculatus_S2_contig8313.16457.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1199bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8313:4933..6131+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8313:4933..6131+ >mRNA_E_fasciculatus_S2_contig8313.16457.1 ID=mRNA_E_fasciculatus_S2_contig8313.16457.1|Name=mRNA_E_fasciculatus_S2_contig8313.16457.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=615bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8313:4933..6131+ (Ectocarpus fasciculatus EfasUO2)back to top |