mRNA_E_fasciculatus_S2_contig8304.16452.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8304.16452.1
Unique NamemRNA_E_fasciculatus_S2_contig8304.16452.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Cyclin (D1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL5_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 6.630e-107
Identity = 152/158 (96.20%), Postives = 155/158 (98.10%), Query Frame = 1
Query:  223 KYEEAECNMPMISELADATEMSLTTSIVTRGELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLHR 696
            +YEEAECNMPMISELADATEMSLTTSIVTRGELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAA AIL ARRALCIKPMWRDELT+LTGYKLE+ISDCGEDLW FYEKMFPLHR
Sbjct:  126 RYEEAECNMPMISELADATEMSLTTSIVTRGELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAAAAILTARRALCIKPMWRDELTDLTGYKLEEISDCGEDLWHFYEKMFPLHR 283          
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Cyclin-like (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBR6_9STRA)

HSP 1 Score: 305 bits (781), Expect = 9.180e-102
Identity = 147/229 (64.19%), Postives = 171/229 (74.67%), Query Frame = 1
Query:   31 EPPAEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEMSLTTSIVTRGELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLHRPLRTDAS 717
            +P A Y  HRRYMVDWISE+GE+L L  VTIHSA+SFLD++     Y  + W L A+CCLS+AAKYEEAE NMPM+SE+A A E  LTT +VT+GEL L +  L WD+SRVTAMHFLGYY  QGVT   D CQGR LV KV  YM KYV+FFANLCQQ Y FQR++PS IAA +ILAARRALCI P+WR EL  LTG    DI  C E++W+FYE MFP H+PLRT  S
Sbjct:    4 DPSATYIPHRRYMVDWISEIGEELKLQPVTIHSAISFLDQVCTTQGYDPKGWRLQAICCLSVAAKYEEAERNMPMVSEMAIAAETRLTTGMVTQGELSLARG-LGWDISRVTAMHFLGYYLHQGVTFLSDECQGRALVTKVTRYMKKYVEFFANLCQQDYSFQRHRPSTIAAASILAARRALCIAPLWRPELERLTGCAPRDIQACAEEVWAFYEAMFPTHQPLRTSGS 231          
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Cyclin (N-terminal domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTM7_THAPS)

HSP 1 Score: 202 bits (515), Expect = 2.080e-60
Identity = 100/223 (44.84%), Postives = 144/223 (64.57%), Query Frame = 1
Query:   34 PPAEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEMSLT--TSIVTR-GELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLH 693
            P + Y  +RRY+VDW+S+VGEQ  L T T+H  + +LD++    +     W L A  CLS+AAKYEEAE + P I +L   T++S    TS+  R GE+ +++N L W +  +  +H +GYY S+G T  DD  QGR L+EK+  Y+ KY +FF NL  Q Y FQ+Y P+H+AA  +LA+R AL I P WR EL ELTG++ ++I +  + +WS+YE+ FP H
Sbjct:   85 PTSSYIPYRRYLVDWMSDVGEQCSLHTSTVHCGILYLDKIFREREVPRGSWQLLATACLSVAAKYEEAEEHCPHIPDLLRLTKLSSVGHTSLSFREGEVQVLRN-LGWKLRAIPPLHVIGYYLSKGATFVDDAWQGRSLIEKIPKYIKKYAEFFCNLTLQEYSFQQYLPTHLAAAILLASREALQISPRWRPELEELTGFEEKEIGEAFQHVWSYYEEQFPGH 306          
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Hypothetical (protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2BY09_9STRA)

HSP 1 Score: 202 bits (514), Expect = 9.340e-60
Identity = 101/223 (45.29%), Postives = 144/223 (64.57%), Query Frame = 1
Query:   34 PPAEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEMSLT--TSIVTR-GELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLH 693
            P A Y  +RRY+VDW+S+VGEQ  L   T+H ++ FLD++    D     W L A  CLS+AAKYEEAE + P I EL   T++S    TS+  R GEL+++++ L W +  +  +H +GY+ ++G T  DDT QGR L+EK+  Y+ KY +FF NL  Q Y FQ+Y P H+A   +LA+R AL ++P WR EL  LTGY+  +I+D  + +WS+YE+ FP H
Sbjct:  127 PGASYLPYRRYLVDWMSDVGEQCRLHNTTVHVSILFLDKVFRSRDIPRSQWQLLATACLSVAAKYEEAEEHCPPIPELLQLTKLSSAGHTSLSFREGELEILRH-LGWRLRAIPPLHVIGYFLAKGTTFEDDTWQGRALIEKIPKYVKKYAEFFCNLTLQEYAFQQYLPVHLATAILLASRVALQLQPRWRPELARLTGYEEAEITDVFQHVWSYYEEQFPGH 348          
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YXT2_TRICV)

HSP 1 Score: 198 bits (503), Expect = 7.030e-59
Identity = 100/226 (44.25%), Postives = 144/226 (63.72%), Query Frame = 1
Query:   25 TAEPPAEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEM--SLTTSIVTR-GELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLH 693
            T  P + Y  +RRY+VDW+S+VGEQ  L   T+H ++ +LD++    +     W L A  C+S+AAKYEEAE + P I EL   T++  S  T++  R GEL ++Q+ L W +  +  +H +GYY S+G T  DDT QGR L+EK+  Y+ KYV+FF NL  Q Y FQ+Y P+H+AA  +LA+R AL ++P WR EL  +TGY+  +I D    +W +YE+ FP H
Sbjct:   59 TYSPNSSYLPYRRYLVDWMSDVGEQCRLHNTTVHVSILYLDKMFRSRNIPRNQWQLLATACISVAAKYEEAEEHCPPIPELLQLTKLCNSGHTALSFREGELAVLQH-LGWRLRAIPPLHIVGYYLSKGATFEDDTWQGRALIEKIPKYVKKYVEFFCNLTLQEYSFQQYLPTHLAAAILLASRVALQLEPRWRPELARVTGYEDHEIVDVFTHVWRYYEEQFPGH 283          
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Cyclin-like (protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FL21_9STRA)

HSP 1 Score: 194 bits (494), Expect = 3.730e-58
Identity = 101/221 (45.70%), Postives = 138/221 (62.44%), Query Frame = 1
Query:   40 AEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEMSLT--TSIVTR-GELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLH 693
            A Y  +RRY+VDW+S+VGEQ  L   T+H  + FLD++    +     W L A  C+S+AAKYEEAE + P I EL   T++     T +  R GEL++++  L W +  V  +H +GY+ ++G    +DT QGR L+EK+  YM KY DFF NL  Q Y FQ+Y PSH+AA  ILA+R AL I+P WR EL  LTGY   +I+D    +WS+YE+ FP H
Sbjct:   18 AAYLPYRRYLVDWMSDVGEQCRLHNSTVHVGILFLDKIFRSRNIPRGQWQLLATACISVAAKYEEAEEHCPPIPELLRLTKLGNAGHTPLSFRDGELEVLRY-LNWQLRAVPPIHVVGYFLAKGAVFYEDTWQGRSLIEKIPKYMKKYADFFCNLTLQEYSFQQYLPSHLAAAVILASRVALNIEPRWRPELVRLTGYSEIEITDAFHHVWSYYEEQFPGH 237          
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Hypothetical (protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M1N0_9STRA)

HSP 1 Score: 196 bits (498), Expect = 6.800e-58
Identity = 100/226 (44.25%), Postives = 143/226 (63.27%), Query Frame = 1
Query:   25 TAEPPAEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEMSLT--TSIVTR-GELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLH 693
            T  P A Y  +RRY+VDW+S+VGEQ  L T T+H ++ FLD++    +     W L A  CLS+AAKYEEAE + P I +L   T++S     S+  R GE+++++  L W +  V  +H +GY+ S+G T  DDT QGR L++K+  Y+ KY +FF NL  Q Y FQ+Y P+H+AA  ILA+R +L I P WR EL  LTGY  ++I    + +W++YE+ FP H
Sbjct:   80 TYAPQASYIPYRRYLVDWMSDVGEQFHLHTSTVHVSILFLDKIFRTREIPRSHWQLLATACLSVAAKYEEAEEHCPAIPDLLKLTKLSNVGHNSLSFRDGEVEVLKY-LGWKLRAVPPIHVVGYFLSKGATFEDDTWQGRALIDKIPKYVKKYAEFFCNLTLQEYSFQQYLPTHLAAAIILASRVSLQITPQWRPELQLLTGYSEDEIKGAFKHVWAYYEEQFPGH 304          
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L9W8_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.010e-57
Identity = 99/223 (44.39%), Postives = 143/223 (64.13%), Query Frame = 1
Query:   34 PPAEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEMSLT--TSIVTR-GELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLH 693
            P A +  +RRY+VDW+S+VGEQ  L T T+H +V +LD++          W L A  CLSIAAKYEEAE + P I +L   T+++     S+  R GE+ ++++ L W +    A+H +GYY S+G    DDT QGR L+EK+  Y+ KY +FF NL  Q Y+FQ+Y P+ +AA  +LA+R AL ++P WR EL +LTGY+ E+I D    +W++YE+ FP H
Sbjct:  110 PEAAFLPYRRYLVDWLSDVGEQFRLHTSTVHVSVLYLDKIFRSVSIPRNQWQLVATACLSIAAKYEEAEEHCPPIPDLLSLTKLASAGHNSLTFREGEVQVLKH-LGWRLRAFPAIHVIGYYLSKGACFEDDTWQGRGLIEKIPRYVKKYAEFFCNLTLQDYEFQQYLPTQLAAAILLASRVALQLEPRWRPELVQLTGYEEEEIVDIFHHVWAYYEEQFPGH 331          
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Cyclin (N-terminal domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RL28_THAOC)

HSP 1 Score: 199 bits (507), Expect = 3.060e-56
Identity = 103/227 (45.37%), Postives = 141/227 (62.11%), Query Frame = 1
Query:   22 KTAEPPAEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEMSLT--TSIVTR-GELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLH 693
            +T  P A Y  +RRY+VDW+S+VGEQ +L T T+H  + FLD++    +     W L A  CLSIAAKYEEAE + P I +L   T++     TS+  R GE+++++N L W +  V  +H +GY+ S+G    DD+ Q R L++K+  Y+ KY DFF NL  Q Y FQ+Y PSH+AA  +LA+R AL I P WR EL  LTGY    I D    +WS+YE+ FP H
Sbjct:  389 QTYVPHASYIPYRRYLVDWMSDVGEQCNLHTSTVHVGILFLDKIFRSREVPRNHWQLVATACLSIAAKYEEAEEHCPPIPDLLQLTKLHSAGHTSLTFREGEVEVLRN-LGWKLRAVPPLHVIGYFLSKGAVFHDDSWQSRSLIDKIPKYIKKYADFFCNLTLQEYSFQKYLPSHLAAAILLASRVALQITPRWRPELEALTGYSEAGIEDVFNHVWSYYEEQFPGH 614          
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Match: Cyclin (N-terminal domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z377_9STRA)

HSP 1 Score: 190 bits (482), Expect = 2.000e-55
Identity = 96/221 (43.44%), Postives = 139/221 (62.90%), Query Frame = 1
Query:   40 AEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLTDYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEMSL---TTSIVTRGELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYMNKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTELTGYKLEDISDCGEDLWSFYEKMFPLH 693
            A Y  +RRY+VDW+S+VGEQ  L   T+H A+ FLD++    +     W L A  C+S+AAKYEEAE + P I +L   T++     T      GEL++++  L+W +  +  +H +GY+ ++GVT  DD+ QGR L+EK+  Y+ KY +FF NL  Q Y FQ+Y P+ + A  ILA+R AL I+P W+ EL ELTGY   +I+D    +WS+YE+ FP H
Sbjct:   91 ASYLPYRRYLVDWMSDVGEQCRLHNSTVHVAILFLDKIFRSRNIPRGQWQLLATACISVAAKYEEAEEHCPPIPDLLRLTKLGNAGHTPLSFREGELEVLRY-LKWQLRAIPPIHVVGYFLAKGVTFTDDSWQGRALIEKIPRYVKKYAEFFCNLTLQEYAFQQYLPTLLGAAIILASRVALNIEPRWKPELMELTGYNEVEITDAFHRVWSYYEEQFPGH 310          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8304.16452.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Cyclin6.630e-10796.20D1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID... [more]
Cyclin-like9.180e-10264.19protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Cyclin2.080e-6044.84N-terminal domain-containing protein n=1 Tax=Thala... [more]
Hypothetical9.340e-6045.29protein n=3 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical7.030e-5944.25protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
Cyclin-like3.730e-5845.70protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 ... [more]
Hypothetical6.800e-5844.25protein n=1 Tax=Skeletonema marinoi TaxID=267567 R... [more]
Hypothetical1.010e-5744.39protein n=1 Tax=Amphora coffeiformis TaxID=265554 ... [more]
Cyclin3.060e-5645.37N-terminal domain-containing protein n=1 Tax=Thala... [more]
Cyclin2.000e-5543.44N-terminal domain-containing protein n=1 Tax=Pseud... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8304contigE_fasciculatus_S2_contig8304:778..5523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score203.0
Seed ortholog evalue1.7e-49
Seed eggNOG ortholog35128.Thaps21159
Preferred nameCCNJL
Model size792
KEGG koko:K06627,ko:K13983,ko:K21771
KEGG Pathwayko04068,ko04110,ko04152,ko04218,ko04914,ko05161,ko05165,ko05169,ko05203,map04068,map04110,map04152,map04218,map04914,map05161,map05165,map05169,map05203
KEGG ModuleM00693
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000278,GO:0001932,GO:0003006,GO:0003674,GO:0007049,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0008150,GO:0009653,GO:0009790,GO:0009987,GO:0010468,GO:0016538,GO:0019207,GO:0019220,GO:0019222,GO:0019887,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030234,GO:0031323,GO:0031399,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0042325,GO:0043549,GO:0044703,GO:0045448,GO:0045859,GO:0048468,GO:0048477,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051338,GO:0051704,GO:0060255,GO:0060966,GO:0060968,GO:0065007,GO:0065009,GO:0080090,GO:0098772
Exons9
EggNOG free text desc.Cyclin_C
EggNOG OGs2XASD@2836,COG5024@1,KOG0654@2759
Ec32 ortholog descriptioncyclin D1
Ec32 orthologEc-11_004300.1
EC3.6.4.13
Cds size777
COG Functional cat.D
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8304.16452.1prot_E_fasciculatus_S2_contig8304.16452.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8304 793..5523 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842491.0823712-UTR-E_fasciculatus_S2_contig8304:777..7921696842491.0823712-UTR-E_fasciculatus_S2_contig8304:777..792Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8304 778..792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842491.1053457-CDS-E_fasciculatus_S2_contig8304:792..8311696842491.1053457-CDS-E_fasciculatus_S2_contig8304:792..831Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8304 793..831 +
1696842491.1185014-CDS-E_fasciculatus_S2_contig8304:1127..11841696842491.1185014-CDS-E_fasciculatus_S2_contig8304:1127..1184Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8304 1128..1184 +
1696842491.130157-CDS-E_fasciculatus_S2_contig8304:1946..20551696842491.130157-CDS-E_fasciculatus_S2_contig8304:1946..2055Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8304 1947..2055 +
1696842491.140601-CDS-E_fasciculatus_S2_contig8304:2746..28611696842491.140601-CDS-E_fasciculatus_S2_contig8304:2746..2861Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8304 2747..2861 +
1696842491.1497996-CDS-E_fasciculatus_S2_contig8304:3333..33971696842491.1497996-CDS-E_fasciculatus_S2_contig8304:3333..3397Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8304 3334..3397 +
1696842491.160519-CDS-E_fasciculatus_S2_contig8304:4132..41831696842491.160519-CDS-E_fasciculatus_S2_contig8304:4132..4183Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8304 4133..4183 +
1696842491.1701922-CDS-E_fasciculatus_S2_contig8304:4406..45401696842491.1701922-CDS-E_fasciculatus_S2_contig8304:4406..4540Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8304 4407..4540 +
1696842491.178428-CDS-E_fasciculatus_S2_contig8304:5083..51951696842491.178428-CDS-E_fasciculatus_S2_contig8304:5083..5195Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8304 5084..5195 +
1696842491.186905-CDS-E_fasciculatus_S2_contig8304:5427..55231696842491.186905-CDS-E_fasciculatus_S2_contig8304:5427..5523Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8304 5428..5523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8304.16452.1

>prot_E_fasciculatus_S2_contig8304.16452.1 ID=prot_E_fasciculatus_S2_contig8304.16452.1|Name=mRNA_E_fasciculatus_S2_contig8304.16452.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=259bp
MAKTAEPPAEYPAHRRYMVDWISEVGEQLDLLTVTIHSAVSFLDELMVLT
DYSTRDWHLYAVCCLSIAAKYEEAECNMPMISELADATEMSLTTSIVTRG
ELDLVQNRLEWDVSRVTAMHFLGYYTSQGVTAPDDTCQGRRLVEKVVTYM
NKYVDFFANLCQQGYQFQRYKPSHIAATAILAARRALCIKPMWRDELTEL
TGYKLEDISDCGEDLWSFYEKMFPLHRPLRTDASASLKKAAAVDQQQQAA
AAAAAAAAA
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mRNA from alignment at E_fasciculatus_S2_contig8304:778..5523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8304.16452.1 ID=mRNA_E_fasciculatus_S2_contig8304.16452.1|Name=mRNA_E_fasciculatus_S2_contig8304.16452.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4746bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8304:778..5523+ (Ectocarpus fasciculatus EfasUO2)
AAGTTCGACAAGAGGATGGCCAAGACCGCGGAGCCCCCCGCGGAGTACCC CGCGGTAAGAAAGGGGGAGGGGTGCTATTCACCGTTTTAAGTTTTCGACG CGTGGTGTGTTTGTTGTAGTGGTCTTTTGTAAACCTTTTCCTGTTGTCTT TTTCTTGTTTGTTTTTCTACGAGATTTGTGCTGCGTGTGTGTTTCACTGA TTATTCTTTTCTGATTGCTTGAGGTGTCGTAGAGATGTCAACGTACGCAT GTCACAGGCACGCTTGCAACCGCGTATCTCACCGCTTCCGTTGCACCGGT GCTGCTGCTGCTGCTGCCGCCGCTCTCTGCTGGCCCGGCGGTGAGAGCAG CATCGACGTTACATGGTCGACTGGATAAGCGAGGTCGGAGAGCAGCTGGA CTTGCTGGTGAGTCGCGGTGATCTCCCTCCACTGAAGGCGTTTTATTTCA TCCCCGAAGTCAATGGTCTAACGACTACGGCATGCACGGCTACGAGTACC CCCCCCCTCTATTCTTCCGCTGCGAAGAATTAGGATTCCAGTTGCTCGGG ATGGTAAGGGGGATGAAAAGAGGATGGTAGAGACGGGCTTTGCTCAAGTG CAAGATGTGGTAGGATAATAATTCCCCCCATTTTCGTATCTTCCTTTCAT CACGGAAGTGGGGGAAGTGATTCAATCTTCCTCACATCTACCGGTTGGAT GATTCTCGGCGAACCTTGCGGCTTTCTGCCTTGTGCCCCCATTGGCTGTG TTGTCGTGAGAGACCCCGAGACGCGTACATACTTGTCTGCTATTCGTTTT TGTTTGCTCTCGTAGTAGTTGACCCCAGAAGCGTGTGATCTTGAGTCACA ACCGGGAGGCACGGACCGAGGGAGGAAACCCTGTAATGTGCATGTTGTCA TTTTTTTTCGAAGTTTTTTCGTACGGCCAGGTATATCCTGTTCTTCAAGC GATCGGCGTTGCGTTCGACCATACCCCCCTTCCCCCTCAGGCATCCTATC TTGTTCACTCGAGGTTGGTTGGCGCTCAACCTTTCGTTTTCTCGCCCATG TATCCCCCCCCCTCCTCCGTTAACCCGTCCTCTCGAGGACGCGTGGTCAA TGATCTAACCGCTAAGGTGTGCATAACATGAGTACTCCCCCCCCCCCCAT CTGTTGTTCCCTTGCGAAGACGGTGACGATTCATTCGGCGGTTTCATTCC TGGACGAGTTGATGGTGCTTACCGACTACAGCACGAGAGATTGGCACCTC TACGCCGTGTGCTGCCTCAGCATAGCCGGTGCGTGATCTACATAAGGAAC GGGGGGGGCGTGTACACCCATGTAAACGCATGCCGTACTTGCTAGACCGA AGGCGGGGGTGTGTGTGTAGAGGTGGTTTAAAAGAGCTTGTCGTGCATGT TGTGGTTGTTGGTCGCTCTGTCACGACGTTGAGGGTCAATGCTCCTCCGA AACCTTGTCTATTTTTTTTGTACATGTTCCGGCTACGCGCACACCCAAGA AACATGGTATCTGGCATTGCTGCTCACCACGTTCTTGCGCCCCGAAATGT TGCCGACAACGTTCACGATGGTATTGGCCAGCACACCTTGTAGATAGCTC AACGACATGGCAGTAGCAGCGTCGTCAACACGAAAGGGGGACCCTTGGTC GAGAGTCTGCAAAGCCTGTGTCCACGGCGGTGTTTTCACCGTTTTTTTTT TTTTTTTTAGTGTTTTCTGCCCGTTTTCATTGTGTGTGGGAGTTGTTGGT TTTCCCGATACTCGCCCAAAAGATTTTTCGGTGGTAACATTGTTTGGGCT TAGCTACCGTTCCTTCCCGCACGGAATCTCCAGGCTTTCCGGGTGGGTAA ATTGCGCGCGTGGGAGACGTTTGGCAACCAACGTTTTTTTTGCGAAGCCG ACAACTAGAACAACAACACTGCTGTGCGACGTCCCCACCCTACCTCCTCT ACCCCTTCCCCCATTGCAGCCAAGTACGAGGAGGCGGAGTGTAACATGCC CATGATCTCAGAACTCGCCGATGCGACGGAGATGTCGCTGACAACTTCCA TCGTAACACGCGGAGAGCTGGACCTCGTGCAAAAGTGAGCGTGCACTAAA TTGGCGTTTTTCGCGACGTGTGTAGCATGGGTGTTCAGCATGGCACGTCT CTTGGTACCAGAACGATCACAACCGCTGGTTGCGGCATATACTGTATGGC GCATGGAGCATAGACAAGGAGAACATCAATATAGTCTTGTGGCCTGGCCG CGGCATTACCGCGGCTCTTGCCTCCCCGCCTGCCGCCGCTGTCGTTTCGG TCGCCTGTCTTTGGGGTGCGCCGTTACACCCGTGGCGTGGTTCCCGCTTT GTTTTGGTGGTGTGTCTTTCGGGGGGTTACTCTATTCGTCCTTTGCTCTT GGTTAACACCGCCCTTTGCTGTTGGCCTAAGCTTGGCCTACGCTGTGCTT TGCGTTTAGTCGGCACCGTCCCTTCGCACACCGTCCTTTGGCTTTTGGCT CACACCGTCCTTTTTGCTTTTGGCTTACACCGTCCTTTTGGCCGACACCG CACCAGCCGGCTTGAGTGGGACGTATCGCGGGTGACCGCCATGCACTTCT TGGGGTACTACACTTCCCAGGTGTGTTGTCGGGGGGGGGGGGCGGCGTGT AGAAGAATGCGAGCGTGCATCCATGGATATCTTGCTGCGGCGGCAAGGGT GTACGTTGTGTGTGCCGTGGTGTTTGTGTTTTGGCTCATTTTCATTCCTT CCTTGTGGGTAGAAGAAACTGTTGGGTTTAGGTAGAAGCTGGGAGACACG AATGGCATCCAATCGAACGGTGCCGGTGTTGCAAGTAAAACGAGGCAGAA GAATGTTGACATGGAGGTTTGTAGTGTTGCTGATGGAGGCGTTTGGCTTG GCTACCCTGAGTCCGTTTAGCACGCGCGGAGGAGTGCGGGACTTACTTTT TTTTTTCCTCCCATTATTGAACTCTGTGCGTCTCTGGGCCCTATCCCCCA CTTCTGCTAGCTAGACGACCCAACCGGGGTCTCATAGGAGGGGGGGGGGT TGGACCCCCTCCTGCGGTTCCTGCCTGAGATATTTTTATCGCGAGAAGGG TGCAGCAATCCCTTCCCTCGCGACTTATGAAGTCGATTTTGGTTGTACTA ACAGCGAGCTTTGCAGCGCGTCGCTTCCGAATTAGACCAGGATTTGTTTA GTGGCATGAAAACTGTTATGGCATGAAAACTGTTGCAGCTGCTGCTGCCG TTCGCGCGCCACTCCCACGTTCCTGCGTCCCTGTCGCTGTTGTTTTATGC TGCTGCCGCCGCCGCCGCCGCGGTTATTTCTTGTTGCCTTTTCCGACAAC GACAGGGAGTAACCGCGCCGGACGACACGTGCCAAGGGAGGCGGCTCGTC GAGAAGGTACGGCGATGGTTGGGCGACGCCATGACATCTGAAAAACCTCA GCGCCGAAGTTTCCTTGCCGAAAGCGTCGCCGCATAGGAACGTAGCTCTG CAGCCAGCCACTTTGGTTGCTTCAAATCACGATGCAAGTCTACGGTAGGT TAATACCCGCGCGTGCCTCATCCCATTCTCACCCCGGCCCCCTTCTCCAC GCCGTGTCCCCTGTTGCACAATTGCGCAGGTCGTGACGTACATGAACAAG TACGTGGACTTCTTCGCGAACCTATGCCAGCAGGGCTACCAGTTCCAGCG GTATAAGCCGTCGCACATCGCCGCGACCGCTATCCTTGCCGCGCGGAGAG CACTCTGCATAAAGTGAGTTTTGTTGTTGTTGTTGTTGTTGTTGAAACCA TGTTTGATGTACCCATCCAAGGTAAGATTGCGCTTTGCATAAAATGAGTT TTTTTTTATTGTTCAAACCTTGTGTGATTTACTACAAGTGAAGATCGCTT TTTGTTAAATAGTACTCGATTTTTCATCCGAAGTAAGATTGCGCTTTGCG TAAGTGAGCTTTTTTTTGTTGTTCAAACCTTGTGTGATTACCCATCTAAA GTGAATATCGCTTTTTGTTAAATAGTTTTCGATTTTTTTTTTCTTGCCGC ACGCTGTATACCGCCGCCCGGTCGTTTTGCGTACACAGAGGAGGAGTTCA TCATAGGTATTACGGTACTTTCTGTGATGCCCACCAAGTACTGTTCAAAT TCAGCTACCACTCTGTTCGGGAATAGAGGGACCACTGGGACAATCACACA AGTATCCGAGTGGTTCCTACATTTCCGATCGAATGTGGTACGTGATTGCT TCTACGGTTGCCATAGAACATTCCACTCATAACTTTAGTTAAAACAATGA TACCAGACCGATGTGGCGAGATGAGCTGACCGAGCTGACGGGCTACAAGC TGGAGGACATATCTGATTGCGGCGAGGACCTGTGGAGCTTCTACGAGAAG ATGTTCCCGTTGCACAGGGTGAGCGAGATGAGACCGCCAGGAATGTCGCC AGAGTTGCACCGTATGTTCCGTTGGTTTCTAAAAAAAAAAATTGTCCTCC CATCCGATGCTTAGCAGCAGCCACCGCTACCCCCTGCTTGCGTACCAGAC CCGTGTACTGGTGCACGCCTGTCTGATCCTGTTTCTACTCTTTTGTGCGT CTTTGTCGCTCCTCTTTAATTTCTCTCGTCTCACGTACGTCCGCCCGAAG CCCCTGCGCACGGATGCTTCAGCGTCGCTCAAGAAGGCCGCTGCCGTCGA CCAGCAGCAACAGGCCGCCGCCGCCGCCGCCGCCGCAGCAGCAGCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8304:778..5523+

>mRNA_E_fasciculatus_S2_contig8304.16452.1 ID=mRNA_E_fasciculatus_S2_contig8304.16452.1|Name=mRNA_E_fasciculatus_S2_contig8304.16452.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=777bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8304:778..5523+ (Ectocarpus fasciculatus EfasUO2)
ATGGCCAAGACCGCGGAGCCCCCCGCGGAGTACCCCGCGCATCGACGTTA
CATGGTCGACTGGATAAGCGAGGTCGGAGAGCAGCTGGACTTGCTGACGG
TGACGATTCATTCGGCGGTTTCATTCCTGGACGAGTTGATGGTGCTTACC
GACTACAGCACGAGAGATTGGCACCTCTACGCCGTGTGCTGCCTCAGCAT
AGCCGCCAAGTACGAGGAGGCGGAGTGTAACATGCCCATGATCTCAGAAC
TCGCCGATGCGACGGAGATGTCGCTGACAACTTCCATCGTAACACGCGGA
GAGCTGGACCTCGTGCAAAACCGGCTTGAGTGGGACGTATCGCGGGTGAC
CGCCATGCACTTCTTGGGGTACTACACTTCCCAGGGAGTAACCGCGCCGG
ACGACACGTGCCAAGGGAGGCGGCTCGTCGAGAAGGTCGTGACGTACATG
AACAAGTACGTGGACTTCTTCGCGAACCTATGCCAGCAGGGCTACCAGTT
CCAGCGGTATAAGCCGTCGCACATCGCCGCGACCGCTATCCTTGCCGCGC
GGAGAGCACTCTGCATAAAACCGATGTGGCGAGATGAGCTGACCGAGCTG
ACGGGCTACAAGCTGGAGGACATATCTGATTGCGGCGAGGACCTGTGGAG
CTTCTACGAGAAGATGTTCCCGTTGCACAGGCCCCTGCGCACGGATGCTT
CAGCGTCGCTCAAGAAGGCCGCTGCCGTCGACCAGCAGCAACAGGCCGCC
GCCGCCGCCGCCGCCGCAGCAGCAGCA
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