mRNA_E_fasciculatus_S2_contig8303.16451.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8303.16451.1 vs.
Match: HSP60 (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRB3_9PHAE) HSP 1 Score: 214 bits (545), Expect = 5.530e-58 Identity = 109/114 (95.61%), Postives = 111/114 (97.37%), Query Frame = 1
Query: 295 QATKASCANMDQKIGVEIIEKALRMPVHTIAMNAGVEGAVVVGELLKTEDPQWGHNAATGEYCDMIQAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPEEEAPAPPMGGG 636
+ATKASCANMDQKIGVEIIEKALRMPVHTIAMNAGVEGAVVVGELLK EDP+WGHNAATGEYCDMIQAGIIDPTKVVRTALVDAQSVAALLMTAEAMV DLPEEEAPA PMGGG
Sbjct: 449 EATKASCANMDQKIGVEIIEKALRMPVHTIAMNAGVEGAVVVGELLKAEDPKWGHNAATGEYCDMIQAGIIDPTKVVRTALVDAQSVAALLMTAEAMVADLPEEEAPASPMGGG 562
BLAST of mRNA_E_fasciculatus_S2_contig8303.16451.1 vs.
Match: Uncharacterized (protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QND6_VANPL) HSP 1 Score: 149 bits (376), Expect = 1.820e-36 Identity = 74/113 (65.49%), Postives = 94/113 (83.19%), Query Frame = 1
Query: 304 KASCANMDQKIGVEIIEKALRMPVHTIAMNAGVEGAVVVGELLKTEDPQWGHNAATGEYCDMIQAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPEEEAPAPPMGGGGM 642
K AN DQKIGV+II+ ALR PVHTIA NAGVEGAVVVG+LL+ ++P G++AA GEY D+++AGIIDP KV+RTALVDA SV++L+ T EA+V +LP++E APP+GGGGM
Sbjct: 219 KLHTANFDQKIGVQIIQNALRTPVHTIAANAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDLVKAGIIDPLKVIRTALVDAASVSSLMTTTEAVVVELPKDEKDAPPVGGGGM 331
BLAST of mRNA_E_fasciculatus_S2_contig8303.16451.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X5K6_9STRA) HSP 1 Score: 139 bits (351), Expect = 1.450e-35 Identity = 72/106 (67.92%), Postives = 87/106 (82.08%), Query Frame = 1
Query: 319 NMDQKIGVEIIEKALRMPVHTIAMNAGVEGAVVVGELLKTEDPQWGHNAATGEYCDMIQAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPEEE-APAPPMGG 633
N+DQK+GVEI+E+A R PV IA NAG EGAVVVG++L+ + P +G NA TGEY DM++AGIIDPTKVVRT LVDA SVA+L+MTAEA++ D PEE A APPMGG
Sbjct: 1 NLDQKVGVEIVERACRAPVTQIAKNAGHEGAVVVGKMLENDSPAFGFNAQTGEYVDMVEAGIIDPTKVVRTGLVDASSVASLMMTAEALIADHPEEAGAGAPPMGG 106
BLAST of mRNA_E_fasciculatus_S2_contig8303.16451.1 vs.
Match: Chaperonin (Cpn60/TCP-1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM88_9STRA) HSP 1 Score: 150 bits (380), Expect = 3.010e-35 Identity = 79/108 (73.15%), Postives = 91/108 (84.26%), Query Frame = 1
Query: 304 KASCANMDQKIGVEIIEKALRMPVHTIAMNAGVEGAVVVGELLKTEDPQWGHNAATGEYCDMIQAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPEEEAPAPPM 627
KA +NMDQ+IGVEIIEKAL PV +IA NAGVEGAVVVGEL+K + P+ G+NA TGEY DM +AGIIDPTKVVRTALVDAQSVAAL++T EAMV DLP++E AP M
Sbjct: 451 KAKVSNMDQRIGVEIIEKALIAPVKSIANNAGVEGAVVVGELMKKDKPELGYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPKDEGDAPAM 558
BLAST of mRNA_E_fasciculatus_S2_contig8303.16451.1 vs.
Match: 60 (kDa chaperonin n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WFQ7_THATH) HSP 1 Score: 139 bits (350), Expect = 6.390e-35 Identity = 70/110 (63.64%), Postives = 89/110 (80.91%), Query Frame = 1
Query: 304 KASCANMDQKIGVEIIEKALRMPVHTIAMNAGVEGAVVVGELLKTEDPQWGHNAATGEYCDMIQAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPEEEAPAPPMGG 633
K AN DQKIGV+II+ AL+MPVHTIA NAGVEGAVVVG+LL+ ++ G++AA GEY DMI+AGIIDP KV+RTALVDA SV++L+ T EA++ +LP++E P MGG
Sbjct: 49 KLQTANFDQKIGVQIIQNALKMPVHTIASNAGVEGAVVVGKLLEHDNTDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAASVSSLMTTTEAVIVELPKDETSVPAMGG 158
BLAST of mRNA_E_fasciculatus_S2_contig8303.16451.1 vs.
Match: Uncharacterized (protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=I3T1F4_MEDTR) HSP 1 Score: 144 bits (363), Expect = 1.640e-34 Identity = 75/118 (63.56%), Postives = 95/118 (80.51%), Query Frame = 1
Query: 295 QATKASCANMDQKIGVEIIEKALRMPVHTIAMNAGVEGAVVVGELLKTEDPQWGHNAATGEYCDMIQAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPEEE--APAPPMGGGGM 642
+ +K S AN DQKIGV+II+ AL+ PVHTIA NAGVEGAVVVG+LL+ ++P G++AA GEY DM++AGIIDP KV+RTALVDA SV++L+ T EA+V+DLP E+ PA P G GGM
Sbjct: 233 ELSKLSTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAIVSDLPSEDKDGPAMPAGMGGM 350
BLAST of mRNA_E_fasciculatus_S2_contig8303.16451.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4LXB9_9ERIC) HSP 1 Score: 143 bits (361), Expect = 2.270e-34 Identity = 72/111 (64.86%), Postives = 91/111 (81.98%), Query Frame = 1
Query: 304 KASCANMDQKIGVEIIEKALRMPVHTIAMNAGVEGAVVVGELLKTEDPQWGHNAATGEYCDMIQAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPEEEAPAPPMGGG 636
K AN DQKIGV+II+ AL+ PVHTIA NAGVEGAVVVG+LL+ ++P G++AA GEY DM++AGIIDP KV+RTALVDA S+++LL T EA+V +LP++E AP MGGG
Sbjct: 223 KLHTANFDQKIGVQIIQNALKAPVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASISSLLTTTEAVVVELPKDEKEAPGMGGG 333
BLAST of mRNA_E_fasciculatus_S2_contig8303.16451.1 vs.
Match: Heat (shock protein 60 (Fragment) n=1 Tax=Paeonia lactiflora TaxID=35924 RepID=U3GUB3_PAELC) HSP 1 Score: 139 bits (349), Expect = 4.490e-34 Identity = 70/113 (61.95%), Postives = 92/113 (81.42%), Query Frame = 1
Query: 304 KASCANMDQKIGVEIIEKALRMPVHTIAMNAGVEGAVVVGELLKTEDPQWGHNAATGEYCDMIQAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPEEEAPAPPMGGGGM 642
K AN DQKIGV+II+ AL+ PV+TIA NAGVEGAVVVG+LL+ ++P+ G++AA GEY DM++AGIIDP KV+RTALVDA SV++L+ T EA+V +LP+++ A P GGGM
Sbjct: 97 KLQTANFDQKIGVQIIQNALKTPVYTIASNAGVEGAVVVGKLLEQDNPELGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKDDKEATPGMGGGM 209
BLAST of mRNA_E_fasciculatus_S2_contig8303.16451.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453IYX5_AEGTS) HSP 1 Score: 144 bits (363), Expect = 8.110e-34 Identity = 71/113 (62.83%), Postives = 92/113 (81.42%), Query Frame = 1
Query: 304 KASCANMDQKIGVEIIEKALRMPVHTIAMNAGVEGAVVVGELLKTEDPQWGHNAATGEYCDMIQAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPEEEAPAPPMGGGGM 642
K AN DQKIGV+II+ AL+ PVHTIA NAGVEGAV+VG+LL+ E+ G++AA GEY DM++AGIIDP KV+RTALVDA SV++L+ T EA++ ++P+E+ AP MGGGGM
Sbjct: 319 KLPTANFDQKIGVQIIQNALKTPVHTIATNAGVEGAVIVGKLLEQENTDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAIIVEIPKEDKAAPAMGGGGM 431
BLAST of mRNA_E_fasciculatus_S2_contig8303.16451.1 vs.
Match: Uncharacterized (protein n=10 Tax=Convolvulaceae TaxID=4118 RepID=A0A484LP75_9ASTE) HSP 1 Score: 146 bits (369), Expect = 8.670e-34 Identity = 74/113 (65.49%), Postives = 92/113 (81.42%), Query Frame = 1
Query: 304 KASCANMDQKIGVEIIEKALRMPVHTIAMNAGVEGAVVVGELLKTEDPQWGHNAATGEYCDMIQAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPEEEAPAPPMGGGGM 642
K AN DQ++GV+II+ AL+ PV+TIA NAGVEGAVVVG+LL+ E+P G++AA GEY DM++AGIIDP KV+RTALVDA SV++LL T EA+V DLP+EE P MGGGGM
Sbjct: 459 KLPTANFDQRVGVQIIQHALKTPVYTIAANAGVEGAVVVGKLLEQENPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLLTTTEAVVVDLPKEEKDTPAMGGGGM 571 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8303.16451.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8303.16451.1 >prot_E_fasciculatus_S2_contig8303.16451.1 ID=prot_E_fasciculatus_S2_contig8303.16451.1|Name=mRNA_E_fasciculatus_S2_contig8303.16451.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=171bp MQRFSHVSGCSWFTQVRLAYHFHPTHRLRLSDALLPSPVPQATKASCANMback to top mRNA from alignment at E_fasciculatus_S2_contig8303:1897..5005- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8303.16451.1 ID=mRNA_E_fasciculatus_S2_contig8303.16451.1|Name=mRNA_E_fasciculatus_S2_contig8303.16451.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3109bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8303:1897..5005- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8303:1897..5005- >mRNA_E_fasciculatus_S2_contig8303.16451.1 ID=mRNA_E_fasciculatus_S2_contig8303.16451.1|Name=mRNA_E_fasciculatus_S2_contig8303.16451.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=513bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8303:1897..5005- (Ectocarpus fasciculatus EfasUO2)back to top |