mRNA_E_fasciculatus_S2_contig83.16443.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig83.16443.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU71_ECTSI) HSP 1 Score: 1460 bits (3780), Expect = 0.000e+0 Identity = 781/843 (92.65%), Postives = 802/843 (95.14%), Query Frame = 1
Query: 280 DEAAADDIEERPGIMASFTESVASEALDEFNYGNEATADDEVFQRQMRSTAKACLRSLHAILKHKWVRLDPLLEGIKEDLLRMLVSCS-----ALSSSLVVLRHVSGVLGNLSRVIVASSN-EGGPPEWKSRITVFDALKRLAYVDDQRLAFRTSAILYGLTRKRDYVSILPDLRGLGDVIFKLFRSGVPQTQNYCLQAFCNMAHNKDFAASIASDPDLMEGFIVGCMVHTNSSYMKEMSSEVLYYLISNPSTRLTALKGQGLWALVQLADANGSTVSMRLALLALFNLACDLRENARWLNENTVAAVLEFDDEVLGAPAFTGLLYLASTHHRRLSQMLISTRMALEARVKIEGAKFLKRDRALEEDKKFMARTTAALKPGDDEGXXXXXXXXNTTDRQRSFSKSKYFGNKQQGRLRRTFVASHLMPTLATVYNLCCKSGKATKLFFRKDIPEAVAGLLKEMRKAPDEAYYHPQVEIMCVAVLGTMIENAALVPKLIERHVTPAITQGLDSRIVAVRLASLWSLLLLGIPGSGKNGGT----PASAGKDHAGGGTQVRMWMLFCREAVVECKAVSALWTLWESTAATLEAGAREHMRYAISTVTRIFFMDKVAASAAVKQRGAELLALTMDFSADSRAVSPLSLIGEDDSEYDESSSPLVKVSALCCAVVTVHLPDMPAKAVQSVCEGCLGVFLKILPTEDREVRDLCSLAMRCLSGHEELLLDLLSDPSRFTTVLRVLLEEATPVGGMHIEAVLKRVVVLSAVPGVADLSPALLNLTDYVFQRRAGGASRAATKLTFSAAPPKVGGRAASGRAASQSTNGSVSSTRGAGVRGSKAAMSSGTG 2778
+EAAADDIEERP +MASFT+SVASE LDEFNYGNEATADDEVFQRQMR+TAKACLRSLHAILKHKWVRLDPLLEG+KEDLLRMLVSCS ALS LVVLRHVSGVLGNLSRVIVASS+ EGGPP WKSRIT+FDALKRLA VDDQRLAFRTSAILYGLTRKRDYV+ILPDLRGLGDVIFKLFRSGVPQTQNYCLQAFCNMAHNKDFAASIASDPDLMEGFIVGCMVHTNSSYMKEMSSEVLYYLISNPSTRLTALKGQGLWALVQLADANGSTVSMRLALLALFNLACDLRENARWLNENTVAAVL+FDDEVLGAPAFTGLLYLASTHHRRLSQMLISTRMALEARVKIEGAKFLKRDRALEEDKKFMARTTAALKPGDDEG N TDRQRSFSKSKYFG KQQGRLRRTFVASHLMPTLATVYNLCCKSGKATKLFFRK+IPEAV GLL+EMRKA DE YYHPQVEIMCVAVL TMIENAALVPKLIERHVTPAITQGLDSRIVAVRLASLWSLLLLGIPGSG N T PASAGKDHAGGGTQVRMWMLFCREAVVECKAVSALWTLWESTAATLEAGAREHMRYAISTVTRIFFMDKVAASAAVKQRGAELLALTMDFSADSRAVS LSL+GEDDS+YDE+SS LVKVSALCCAVVTVHLPDMPAKAVQSVCEGCL VFLK+LPTE+ EVRDLCSLAMRCLSG+EELLLDLLSDP RFTTVL+VLLEEAT VGGMHIEAVLKRVVVLSAVPGVADLSPALLNLTDYVFQRRAGG+SRA TKLTFSAAPPKVGGRAASGRAASQSTNGSVSSTRGAGVRGSKAAM+S +G
Sbjct: 20 EEAAADDIEERPDMMASFTDSVASEVLDEFNYGNEATADDEVFQRQMRATAKACLRSLHAILKHKWVRLDPLLEGMKEDLLRMLVSCSVAGTQALSPRLVVLRHVSGVLGNLSRVIVASSSDEGGPPRWKSRITLFDALKRLACVDDQRLAFRTSAILYGLTRKRDYVNILPDLRGLGDVIFKLFRSGVPQTQNYCLQAFCNMAHNKDFAASIASDPDLMEGFIVGCMVHTNSSYMKEMSSEVLYYLISNPSTRLTALKGQGLWALVQLADANGSTVSMRLALLALFNLACDLRENARWLNENTVAAVLDFDDEVLGAPAFTGLLYLASTHHRRLSQMLISTRMALEARVKIEGAKFLKRDRALEEDKKFMARTTAALKPGDDEGNDSSSEEENATDRQRSFSKSKYFGYKQQGRLRRTFVASHLMPTLATVYNLCCKSGKATKLFFRKNIPEAVTGLLEEMRKAQDETYYHPQVEIMCVAVLSTMIENAALVPKLIERHVTPAITQGLDSRIVAVRLASLWSLLLLGIPGSGNNDDTTTAAPASAGKDHAGGGTQVRMWMLFCREAVVECKAVSALWTLWESTAATLEAGAREHMRYAISTVTRIFFMDKVAASAAVKQRGAELLALTMDFSADSRAVSALSLVGEDDSDYDETSSALVKVSALCCAVVTVHLPDMPAKAVQSVCEGCLDVFLKVLPTEEHEVRDLCSLAMRCLSGNEELLLDLLSDP-RFTTVLKVLLEEATSVGGMHIEAVLKRVVVLSAVPGVADLSPALLNLTDYVFQRRAGGSSRAPTKLTFSAAPPKVGGRAASGRAASQSTNGSVSSTRGAGVRGSKAAMNSVSG 861 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig83.16443.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig83.16443.1 >prot_E_fasciculatus_S2_contig83.16443.1 ID=prot_E_fasciculatus_S2_contig83.16443.1|Name=mRNA_E_fasciculatus_S2_contig83.16443.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=1763bp ECATGALCNLARKPWITAEICKETKMMQTLLTSIGVALAQGEEGTSTLAAback to top mRNA from alignment at E_fasciculatus_S2_contig83:3865..25794- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig83.16443.1 ID=mRNA_E_fasciculatus_S2_contig83.16443.1|Name=mRNA_E_fasciculatus_S2_contig83.16443.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=21930bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig83:3865..25794- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig83:3865..25794- >mRNA_E_fasciculatus_S2_contig83.16443.1 ID=mRNA_E_fasciculatus_S2_contig83.16443.1|Name=mRNA_E_fasciculatus_S2_contig83.16443.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=5289bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig83:3865..25794- (Ectocarpus fasciculatus EfasUO2)back to top |