mRNA_E_fasciculatus_S2_contig8292.16439.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8292.16439.1
Unique NamemRNA_E_fasciculatus_S2_contig8292.16439.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8292.16439.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIZ8_ECTSI)

HSP 1 Score: 651 bits (1680), Expect = 9.160e-213
Identity = 347/374 (92.78%), Postives = 357/374 (95.45%), Query Frame = 3 
Query:   24 PARARVSGVQMSLGKLMGHPAITGGREKRVDVDDALWLFMRHWLVVRQHRRSLVDRALGQVAPAPSSAASTAAGQDAAQAVIPSPLVSVDSFRAVTTRLENLSRSAPPRGVADLVYVDAYMVASSLSRRPENKAMSHRESTKTALLSSPVLLWDVSGARREQQMPPTFSNRAMRSWLLSSWARYSDPIKAEVPVMLEELQHVSDTTPADDTTREPTGVESAAADLPAGGAPAHTPSGAPGSGGSATKPANVEAAKLVRALEKIRSEVSRLDGYMKDLETFHKEDSMAQSTPVIVPKEASAEQQEQQEQTLSPEIVKKLSRPGEVERASKEMRSVMTILAAVYRRMRPNDPRDFVQDSWASGRRTSLRRTSFNSY 1145
            PARARVSGVQMSLGKLMGHPAITGGREKRVDVDDALWLFMRHWLVVRQHR SLVDRALGQVAPAPSSAAS AAG DAAQA  PSPLVSVD FR VTTRLEN+SRSAPPRGVADLVYVDA+MVASSLSRRPENKAMSHRESTKTALLSSPVLLWD SGARREQQMPP FSNRAMRSWLLSSWARYSDPIKAEV VMLEELQHVSDTTPA+  T+EPTGVESAAADLPAG APAHTP+GA GSGGSA +PANVEAAKLVRALEKIRSEV+RLDGYMKDL+TFHKEDSMAQST V++PKEASAEQQEQQEQTLSPEIVKKLSRPGEVERASKEMRSVM ILAAVYRRMRPNDPRDFVQDSWASGRRTSLRRTSFNSY
Sbjct: 1408 PARARVSGVQMSLGKLMGHPAITGGREKRVDVDDALWLFMRHWLVVRQHRISLVDRALGQVAPAPSSAASAAAGNDAAQAASPSPLVSVDGFRVVTTRLENMSRSAPPRGVADLVYVDAFMVASSLSRRPENKAMSHRESTKTALLSSPVLLWDASGARREQQMPPLFSNRAMRSWLLSSWARYSDPIKAEVLVMLEELQHVSDTTPANGITQEPTGVESAAADLPAGEAPAHTPTGARGSGGSAARPANVEAAKLVRALEKIRSEVNRLDGYMKDLDTFHKEDSMAQSTAVVIPKEASAEQQEQQEQTLSPEIVKKLSRPGEVERASKEMRSVMMILAAVYRRMRPNDPRDFVQDSWASGRRTSLRRTSFNSY 1781
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BLAST of mRNA_E_fasciculatus_S2_contig8292.16439.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD55_9PHAE)

HSP 1 Score: 544 bits (1402), Expect = 1.560e-187
Identity = 296/333 (88.89%), Postives = 306/333 (91.89%), Query Frame = 3 
Query:   21 APARARVSGVQMSLGKLMGHPAITGGREKRVDVDDALWLFMRHWLVVRQHRRSLVDRALGQVAPAPSSAASTAAGQDAAQAVIPSPLVSVDSFRAVTTRLENLSRSAPPRGVADLVYVDAYMVASSLSRRPENKAMSHRESTKTALLSSPVLLWDVSGARREQQMPPTFSNRAMRSWLLSSWARYSDPIKAEVPVMLEELQHVSDTTPADDTTREPTGVESAAADLPAGGAPAHTPSGAPGSGGSATKPANVEAAKLVRALEKIRSEVSRLDGYMKDLETFHKEDSMAQSTPVIVPKEASAEQQEQQEQTLSPEIVKKLSRPGEVERASKEMR 1019
            APARARVSGVQMSLGKLMGHPAITGGREKRVDVDDALWLFMRHW VVRQHR SLVDRALGQVAPAPSSAAS AAG DAAQAV PSPLVSVD FR VTTRLEN+SRSAPPRGVADLVYVDA+MVASSLSRRPENKAMSHRESTKTALLSSPVLLWD SGARREQQMPPTFSNRAMRSWLLSSWARYSDPIKAEV VMLEELQ+VSDTTPAD  T+EP GVE+AAADLPAGGAPAHTP+GA GSGGSA +PANVEAAKLVRALEKIRSE         DL+TFHKE SMAQST  ++PKEASAEQQEQQEQTLSPEIVKKLSRPGEVER SKEMR
Sbjct:   97 APARARVSGVQMSLGKLMGHPAITGGREKRVDVDDALWLFMRHWSVVRQHRISLVDRALGQVAPAPSSAASAAAGNDAAQAVSPSPLVSVDGFRVVTTRLENMSRSAPPRGVADLVYVDAFMVASSLSRRPENKAMSHRESTKTALLSSPVLLWDASGARREQQMPPTFSNRAMRSWLLSSWARYSDPIKAEVLVMLEELQYVSDTTPADGITQEPAGVENAAADLPAGGAPAHTPTGARGSGGSAARPANVEAAKLVRALEKIRSE---------DLDTFHKEGSMAQSTAAVIPKEASAEQQEQQEQTLSPEIVKKLSRPGEVERVSKEMR 420
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8292.16439.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized9.160e-21392.78protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.560e-18788.89protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8292contigE_fasciculatus_S2_contig8292:1918..5652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score644.0
Seed ortholog evalue4.1e-182
Seed eggNOG ortholog2880.D7FIZ8
Model size1891
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2CMZH@1,2QSXT@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_004990.1
Cds size1095
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8292.16439.1prot_E_fasciculatus_S2_contig8292.16439.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8292 2661..5599 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842489.5101445-UTR-E_fasciculatus_S2_contig8292:1917..26601696842489.5101445-UTR-E_fasciculatus_S2_contig8292:1917..2660Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8292 1918..2660 -
1696842489.6093261-UTR-E_fasciculatus_S2_contig8292:5599..56521696842489.6093261-UTR-E_fasciculatus_S2_contig8292:5599..5652Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8292 5600..5652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842489.5214565-CDS-E_fasciculatus_S2_contig8292:2660..27901696842489.5214565-CDS-E_fasciculatus_S2_contig8292:2660..2790Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8292 2661..2790 -
1696842489.5337396-CDS-E_fasciculatus_S2_contig8292:3134..33041696842489.5337396-CDS-E_fasciculatus_S2_contig8292:3134..3304Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8292 3135..3304 -
1696842489.552225-CDS-E_fasciculatus_S2_contig8292:3668..37661696842489.552225-CDS-E_fasciculatus_S2_contig8292:3668..3766Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8292 3669..3766 -
1696842489.5709994-CDS-E_fasciculatus_S2_contig8292:3979..43131696842489.5709994-CDS-E_fasciculatus_S2_contig8292:3979..4313Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8292 3980..4313 -
1696842489.5823812-CDS-E_fasciculatus_S2_contig8292:5066..53271696842489.5823812-CDS-E_fasciculatus_S2_contig8292:5066..5327Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8292 5067..5327 -
1696842489.5965087-CDS-E_fasciculatus_S2_contig8292:5497..55991696842489.5965087-CDS-E_fasciculatus_S2_contig8292:5497..5599Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8292 5498..5599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8292.16439.1

>prot_E_fasciculatus_S2_contig8292.16439.1 ID=prot_E_fasciculatus_S2_contig8292.16439.1|Name=mRNA_E_fasciculatus_S2_contig8292.16439.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=365bp
MSLGKLMGHPAITGGREKRVDVDDALWLFMRHWLVVRQHRRSLVDRALGQ
VAPAPSSAASTAAGQDAAQAVIPSPLVSVDSFRAVTTRLENLSRSAPPRG
VADLVYVDAYMVASSLSRRPENKAMSHRESTKTALLSSPVLLWDVSGARR
EQQMPPTFSNRAMRSWLLSSWARYSDPIKAEVPVMLEELQHVSDTTPADD
TTREPTGVESAAADLPAGGAPAHTPSGAPGSGGSATKPANVEAAKLVRAL
EKIRSEVSRLDGYMKDLETFHKEDSMAQSTPVIVPKEASAEQQEQQEQTL
SPEIVKKLSRPGEVERASKEMRSVMTILAAVYRRMRPNDPRDFVQDSWAS
GRRTSLRRTSFNSY*
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mRNA from alignment at E_fasciculatus_S2_contig8292:1918..5652-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8292.16439.1 ID=mRNA_E_fasciculatus_S2_contig8292.16439.1|Name=mRNA_E_fasciculatus_S2_contig8292.16439.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3735bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8292:1918..5652- (Ectocarpus fasciculatus EfasUO2)
GTCCAGGGGGCGGAGGCGGGGCTCCCGCTAGGGCTCGTGTGTCGGGAGTG
CAGATGTCCTTGGGAAAGCTGATGGGGCACCCAGCAATAACTGGGGGGCG
AGAAAAGAGGGTGGATGTGGACGACGCTCTGTGGCTCTTCATGCGGCACT
GGTTGGTGGGTGGCAACCAGAGTTGGCTGCACGATGCGATAGACAATAAG
CTGCAATTCGTTCGAGTGCACATGCAGGACTACTGTAGTGCGAAAAGCGA
CTGCCTCACCGTTGCTTCCCTTCGCCCGCCCTGGACGTTGACCTCTTTCA
CTCCCAAACTTTGGTCATGTCGCAGGTTGTACGGCAACACCGAAGAAGCC
TGGTTGACCGCGCCCTCGGTCAAGTCGCCCCTGCCCCTTCCTCTGCCGCC
TCGACAGCAGCTGGACAAGACGCCGCTCAAGCCGTCATTCCTTCTCCCTT
GGTGTCAGTGGACAGTTTCCGCGCAGTGACGACGCGGTTAGAGAATCTCA
GCAGATCGGCCCCTCCGAGGGGTGTAGCGGACCTGGTTTACGTTGACGCC
TACATGGTGGCCTCAAGTTTGTCTCGTCGGCCTGAGGTACGTTCTGTTTT
TTGACGGATGAATTTCTTTCCTTTCAAGTCAAGAGGGCTTAGAGGTGGGT
GCGGCTGCTCTCTCCGGATGAGAGCAGAAGGTAGGAACGTGCCTTTATTC
GGAGAGGTTTTGAGCCCGATAGTCTAAATGGGTCCTTTCCGGAATGGACG
AGGTTTGCACTAAACAGACACGACTCTTCCAATAAAAGGGTTGTCGCATC
TGGGAGAGGTATATTGTCACAAGTAAGGTACCCGGTGAAGCAGGTTTTGC
TACGACATCAATGAGGCGTTCTGGCTGATCCGCCCGGTGTTGGATCGTAC
CCATGATGCAGAACAGAGTCATGGGTCGGAGGCATGTGAAGACGCAATAA
GCAGACCATCGCTTCGCAATAAGGCTTGCGATCGCAAGACGCTTCGGCAT
CGTGCGTACAGCGTCTCGGACGAGGAGCCTTCGTGCCCTTGTCGTAGGAG
ACACATCCATCTTGCTTGCTCTTTCGCGAAGTCGAGATTCCCCGAAGAGA
TAACAGCGTCGTCCGATTCCCTCTGTTCGTGGTTGGAGTGAGCTCGTCCC
TACATGACTGTTGCCTTTCAGGCCACCCACAACGACACCCGGCTCTCTCT
CTCCCCAGGGCATGCGCCTTCTCACTTGATGCAGCTCGACTCACTAGATC
CTTCACATGGTGTACAATGTATCTAAGAAATCGTCCTTCTTCCCTCGCTC
CATTCCCTTGCTTCTTTTTCTGTGACCGCCGTCCTACAGAACAAGGCCAT
GTCTCACCGTGAGTCCACAAAGACTGCCCTGCTGTCAAGCCCTGTATTGC
TTTGGGACGTCAGTGGGGCAAGGCGGGAGCAGCAGATGCCTCCGACATTC
AGCAACCGCGCCATGAGAAGCTGGCTCTTGTCGTCATGGGCTCGATATTC
CGACCCCATCAAGGCCGAGGTCCCAGTCATGTTGGAAGAGCTGCAACATG
TCTCGGACACAACACCAGCCGATGACACCACCCGAGAGCCAACCGGCGTT
GAGAGCGCTGCAGCCGACCTGCCGGCCGGTGGGGCGCCAGCGCACACGCC
GTCCGGGGCACCAGGGTCTGGAGGTGACAAGAAACATTGGATGGAGCTCT
TTGCACGTTTGGGGCAAGACTGTGCGTAACCGATCATATCTTGCCGTACA
TGATGCCGTGGGAGCTGTGAAACTTCAGACCACCAGCCAGTGCCAACATC
CCATGAGATGTCTGGCTAGATCACAAATGCCCAAGAAGATCACGCCCGTC
CCTCCCTCCATATATAACTGGCAATACACCAAGCAGGAAGCGCTACGAAA
CCTGCAAACGTCGAGGCGGCGAAGCTCGTCAGAGCGCTGGAGAAGATTCG
GAGCGAGGTCAGCCGCTTAGATGGCTACATGAAGGCGAGCAACATGTCCT
GGGACGTGTGGACCAGCGATCTTGTCATGTTTCTCGAAAATCCACGCGCA
TCCCTCCAAAATGTTGGCGGAAATCTACTCGATTGTATGGACACTCAGTT
GCTCTCGCTTGGCCGCTTTCCAAGCCTTTATTGACACTCTTCGGCCCGAA
GTTAGCGAGCGTATCAATTATCACGTGTGCCAGGCGTAAGGACGTGCGCT
TCCTCTCTCGTGGATGGGTATGAAATATCCGACTGTAAAAACAGCGTTCT
AAAAATAGGGGGCGGGGGGCCTACCTTTGAGATCCAATCTAAGCCCCCCC
TCACCCGCCGCACGATTATCGTGGAAACAACAAATAAACAATACTTAGGA
CCTGGAAACGTTCCACAAGGAGGACAGTATGGCGCAGTCCACCCCTGTCA
TCGTCCCGAAGGAAGCATCCGCTGAGCAACAGGAGCAGCAAGAGCAAACT
CTCTCTCCGGAGATAGTAAAAAAGCTGTCTAGACCCGGAGAGGTGGAGCG
GGCCTCCAAAGAGATGAGGTGAGGTCGGCAAATCTGTTGTCAATCCAACC
GTCTGTGATGTCCAACCTCACATGGAGGAGGTGTTTCGGAGGGGTATCCC
ATCCGATATACTATACACCAAATATGCTGGAGTGCGCACTGCGCACTATT
TATGTAATTTCGATACGAGCACGATCCCGATTAGGAGCACGCCGGGCTGT
AGCCTGACCAGGTTTTCCTCTGGGAAGGGACGAGAGGGGAGGAGGGGTCT
ACACCACTCAAGCTATCGGAAACGCGCAGCTGACGTCTGTTTATTCAACC
GCCCCTTTGTCCCTTTGTTTGTGTCATTCATCCGCCCCTTGCTTGGAACA
ACCTATCCACAGATCTGTCATGACGATTCTGGCCGCGGTCTACCGGCGCA
TGAGGCCAAACGATCCCCGAGACTTCGTGCAAGACTCTTGGGCCTCGGGG
AGACGCACCTCCCTTCGACGTACCAGCTTCAACTCGTACTAAGTTCGAAG
ACGGTCTCTCAAAGATGGACCCGACCACCAGTGCATTGATCAACCGGACA
TTCATTCACGCTTTGTTTGGTGTTCTTACTGATTTCATATTGAGGAGAGT
ATCACCAATCTACGAAGGACCACCCTTCCTTTCAGACAAACCCAGGAGGT
GTGCTGATATCAAGTATTTTCCGTGGAAGGTCACTGACGCTAGCCAAAAA
AGAAAACACCTCAAGAGGTGGGAACACCTCCAGAGACAGGCACAAGGACC
AAACACACACGTTGGTGGCGGTGTCTACGATGTGATCACCATGTGAAGTT
ATTGTAACGCCGAGGGGGATAGACCCACAGAGTCTTGTTTCAAGGGAGGA
AAGCGTCGTTCTGGCACGCAAGATTATTTTGCTGCGAATTTCTTTGATTT
GTTTGTACTCGACTGGGCCTCAGATTGAAATTGAGAAGTATTTGCTTGGA
TGGACCAAGCAGGTCTCACTTCTTCACCTGAAGGATTCAGCACTATTGTG
CGTGTGTGCTTACAAGACCCGACTCTACGGCATAGCATCAGATCAGCAAA
GTACGGTGTGTGGCAGGCGGAGGTAGAAAGTCTACTGGACTACCCGCGAA
CCAAGAGGGCGCGTCATCGTATTGGGTATCTATAGTCTAGGATGCGAGGG
TCACTTAGCACGACGGACGAACATGATGGAAAATTGCTAGACTAATGCGG
GTCGAAGCACACGCTAAACAGAATTGATCGTTGCC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8292:1918..5652-

>mRNA_E_fasciculatus_S2_contig8292.16439.1 ID=mRNA_E_fasciculatus_S2_contig8292.16439.1|Name=mRNA_E_fasciculatus_S2_contig8292.16439.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1095bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8292:1918..5652- (Ectocarpus fasciculatus EfasUO2)
ATGTCCTTGGGAAAGCTGATGGGGCACCCAGCAATAACTGGGGGGCGAGA
AAAGAGGGTGGATGTGGACGACGCTCTGTGGCTCTTCATGCGGCACTGGT
TGGTTGTACGGCAACACCGAAGAAGCCTGGTTGACCGCGCCCTCGGTCAA
GTCGCCCCTGCCCCTTCCTCTGCCGCCTCGACAGCAGCTGGACAAGACGC
CGCTCAAGCCGTCATTCCTTCTCCCTTGGTGTCAGTGGACAGTTTCCGCG
CAGTGACGACGCGGTTAGAGAATCTCAGCAGATCGGCCCCTCCGAGGGGT
GTAGCGGACCTGGTTTACGTTGACGCCTACATGGTGGCCTCAAGTTTGTC
TCGTCGGCCTGAGAACAAGGCCATGTCTCACCGTGAGTCCACAAAGACTG
CCCTGCTGTCAAGCCCTGTATTGCTTTGGGACGTCAGTGGGGCAAGGCGG
GAGCAGCAGATGCCTCCGACATTCAGCAACCGCGCCATGAGAAGCTGGCT
CTTGTCGTCATGGGCTCGATATTCCGACCCCATCAAGGCCGAGGTCCCAG
TCATGTTGGAAGAGCTGCAACATGTCTCGGACACAACACCAGCCGATGAC
ACCACCCGAGAGCCAACCGGCGTTGAGAGCGCTGCAGCCGACCTGCCGGC
CGGTGGGGCGCCAGCGCACACGCCGTCCGGGGCACCAGGGTCTGGAGGAA
GCGCTACGAAACCTGCAAACGTCGAGGCGGCGAAGCTCGTCAGAGCGCTG
GAGAAGATTCGGAGCGAGGTCAGCCGCTTAGATGGCTACATGAAGGACCT
GGAAACGTTCCACAAGGAGGACAGTATGGCGCAGTCCACCCCTGTCATCG
TCCCGAAGGAAGCATCCGCTGAGCAACAGGAGCAGCAAGAGCAAACTCTC
TCTCCGGAGATAGTAAAAAAGCTGTCTAGACCCGGAGAGGTGGAGCGGGC
CTCCAAAGAGATGAGATCTGTCATGACGATTCTGGCCGCGGTCTACCGGC
GCATGAGGCCAAACGATCCCCGAGACTTCGTGCAAGACTCTTGGGCCTCG
GGGAGACGCACCTCCCTTCGACGTACCAGCTTCAACTCGTACTAA
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