mRNA_E_fasciculatus_S2_contig829.16437.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig829.16437.1
Unique NamemRNA_E_fasciculatus_S2_contig829.16437.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig829.16437.1 vs.
Match: V-SNARE (coiled-coil homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN4_ECTSI)

HSP 1 Score: 2079 bits (5386), Expect = 0.000e+0
Identity = 1126/1257 (89.58%), Postives = 1150/1257 (91.49%), Query Frame = 1 
Query:    1 FFGQVGLKSNAGEEQREGPESDGPDADAADVMGSFASPKRLGHHGSISGACVLSYEPTNGLMAVASRGGLVKVFGGPGVELVLEEEGASVAGEDPPSHLLFATPSLLVGVTATGAVLVWDLAAGGRGGSIPSPPDPATGLDERVTSVHAHGXXXXXXLASDAPEERYVFLGFESGRVRVAQVFPVCRESGYTVEPQNTSHGAPDELLQAPGKGLGAVTAIASFGDRDGGXXXXXXXXXXFGIFGHRCGGIVVWDWVRRKRLALRSLGKSQGKEE--------DEEDEEGREVTSLALHPSGEAFAAGFASGCYAVFSASSSPSHEAGPPRWVREVGDDGSCPREGPTIVRTAVSLVRWVRVRGAGAGRTLGLVVAGGVEIEEGEEPDGVSLLVPTSEAVDARGGXXXXERTIKKKD-VVTAAKAALETAVFVPFAMGQERLSHVHCVLSGAVAPTREPHRAGTRSSGELSTEDARVGGKDEPAEPTAAQEDEVEVDEELVVLGLVKWNEEFLGDDGRLHFRLASSIQACPIQTSPYVALLQLAPERFGPHLSGFAKVTAVASTPLLSSSTILDFMTCLGVEQAAAEEEGRNGSQTATAPLLRGGYLRWPDSVPPRRRDEALGTSELLVAGHSDGSLSFWECCGPASRQDAVCLSEGRVVMREVPSGAVLLGSVPAAGLGSPEEGAGSAAVTALDVWVERDHVAAAXXXXXXAGRNACWVAIGFESGDARVIVLSNRMEAGSSSPGFSSGSGGGCKXXXXXGTPLAEKPVEVSDVKLGDDGTIGDASAKGSSGGGRLLKRFLKRGAGQQPSPGDEEGAMEDTELEAAIAEARAEARAIAALEESKEGAPENAEGAEPRGTVDDARKRESVGGEGEEQKTDDHEESDHLRQELSEAMADEGAWSGSVMPPLPKPPPPKHTPDSEKGKEEKLRLDKPPKASLIQLALRLHSHAVRCVALSFDARGSALAFVVADEAGVVSVTDVSTGSASLLPMRVPQSRPCRPSVTIGPMPSALSGGQAPESGASGALFVLLEGWLNVFDLASRDPVDFVQVPGLAPPSGDSHISGGXXXXXAGIREDDFAGSAGRARGRERSEEAPWLACVDKRGLPLLPYASEPFSSSFSPPPRKDDAGNEADGGKVDPEDAPVHAHTIWVSPAPSRTALDDYHEHELQVLGDTPPPEPLLLIVRGATAVVLAISRRDADSVTSSVFARRSSVSPDAATFKGRSGAELVVRSRATLPPAGRSAVPPTVDGAGVCMVA 3744
            F  QVGLKS+AGEEQREGPE+DGPDADAADVMGSFASPKRLGHHGSIS ACVLSYEPTNGLMAVASRGGLVKVFGGPGVELVLEEEGASVAGEDPPSHLLFATPSLLVGVTATGAVLVWDLAAGGRGGSIPSPPDPATGLDERVTSVH+HGXXXXXXLASDA EERYVFLGFESGRVRVAQVFPV RESGYTVEPQNTSHGAPDELLQAPGK LGAVTAIASFGDRDGG          FGIFGHRCGGIVVWDWVRRKRLALRSLGKSQGK+E        D ED EGREVTSLALHPSGEAFAAGFA+GCYAVFS SSSPSHE GPPRWVREVGDDGSCPREGPTIVRTAVSLVRWVRVRGAGAGRT GLVVAGGVEIEEGEEPDGVSLLVP+SEAV ARG XXXX         VVTAAKAALETAVFVPFAMGQERLSHVHCVLSG  APTREP RAGTRSSG+LS EDARVGGKDEP +  AAQEDEVEV EELVVLGLVKWNEEFLGDDGRLHFRLASSIQACPIQTSPYVALLQLAPERFGPHLSGFA VTAVASTPLLSSSTILDFMTCLG EQ   +EEGRNGSQT  +PLLRGGYLRWPDSVP RRRDEALGTSELLVAGHSDGSLSFWECCGPASRQDAVCLSEGRVVMREVPSG VLLGSVPAAGLGSPEEGAG+AAVTALDVWVERDHVAAA      AGRNACWVA+G ESGDARVIVLSNRMEAG S+P F SGSGGGCK     GTPLAEKPVEVSDVKLGDDGT GD S KGSSGGGRLLKRFLKRG GQQPSPGDEEGAMEDTELEAAIAEARAEARAIAALEES+EGAPENAE  EPRGTVDDARKRESVGGEGE Q+TDDHEESDHLRQELSEAMADEGAWSGSVM PLPK PPPKH P++EKG+EEKLRLD+PPKASLIQLALRLHSHAVRCVALSFDARGSAL  VVADEAGVVSVTDVSTGSASLLPMRVPQSRPCRPSVTIGPMPSALSGGQ PE GASGALFVLLEGWLNVFDLASRDPVDFVQVPGLAPPS DS     XXXX AGIREDDFAGSAGR R RERSEE PWLACVDK GLPL PYASEPFSSSFSPPPRKD AG EADG K+DPEDAPVH+HTIWVSP PSRTALDDYHEHELQVL DTPPPEPLLL+VRGATAVVLAISRRDAD VTSSVFARR SVSPDAATFKGRSGAELVVRSR TLPPA RSAVPPT+DGAGVC+VA
Sbjct:    4 FLSQVGLKSSAGEEQREGPENDGPDADAADVMGSFASPKRLGHHGSISDACVLSYEPTNGLMAVASRGGLVKVFGGPGVELVLEEEGASVAGEDPPSHLLFATPSLLVGVTATGAVLVWDLAAGGRGGSIPSPPDPATGLDERVTSVHSHGXXXXXXLASDAHEERYVFLGFESGRVRVAQVFPVYRESGYTVEPQNTSHGAPDELLQAPGKSLGAVTAIASFGDRDGGGGG-------FGIFGHRCGGIVVWDWVRRKRLALRSLGKSQGKKEXXXXXXXXDFEDREGREVTSLALHPSGEAFAAGFAAGCYAVFSVSSSPSHETGPPRWVREVGDDGSCPREGPTIVRTAVSLVRWVRVRGAGAGRTSGLVVAGGVEIEEGEEPDGVSLLVPSSEAVGARGXXXXXXXXXXXXXXVVTAAKAALETAVFVPFAMGQERLSHVHCVLSGTGAPTREPRRAGTRSSGDLS-EDARVGGKDEP-DSAAAQEDEVEVAEELVVLGLVKWNEEFLGDDGRLHFRLASSIQACPIQTSPYVALLQLAPERFGPHLSGFATVTAVASTPLLSSSTILDFMTCLGAEQV--QEEGRNGSQTTASPLLRGGYLRWPDSVPSRRRDEALGTSELLVAGHSDGSLSFWECCGPASRQDAVCLSEGRVVMREVPSGTVLLGSVPAAGLGSPEEGAGNAAVTALDVWVERDHVAAAAGAAA-AGRNACWVAVGLESGDARVIVLSNRMEAGCSNPEFPSGSGGGCKAGSGGGTPLAEKPVEVSDVKLGDDGTTGDDSTKGSSGGGRLLKRFLKRGTGQQPSPGDEEGAMEDTELEAAIAEARAEARAIAALEESREGAPENAETPEPRGTVDDARKRESVGGEGEAQETDDHEESDHLRQELSEAMADEGAWSGSVMSPLPKRPPPKHAPEAEKGEEEKLRLDEPPKASLIQLALRLHSHAVRCVALSFDARGSALVLVVADEAGVVSVTDVSTGSASLLPMRVPQSRPCRPSVTIGPMPSALSGGQTPEPGASGALFVLLEGWLNVFDLASRDPVDFVQVPGLAPPSDDSXXXXXXXXXRAGIREDDFAGSAGRTRSRERSEETPWLACVDKHGLPLQPYASEPFSSSFSPPPRKDHAGTEADGVKLDPEDAPVHSHTIWVSPVPSRTALDDYHEHELQVLSDTPPPEPLLLVVRGATAVVLAISRRDADGVTSSVFARRGSVSPDAATFKGRSGAELVVRSRGTLPPARRSAVPPTIDGAGVCLVA 1248
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig829.16437.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L8_9PHAE)

HSP 1 Score: 2011 bits (5210), Expect = 0.000e+0
Identity = 1103/1288 (85.64%), Postives = 1134/1288 (88.04%), Query Frame = 1 
Query:    1 FFGQVGLKSNAGEEQREGPESDGPDADAADVMGSFASPKRLGHHGSISGACVLSYEPTN-----------------------------GLMAVASRGGLVKVFGGPGVELVLEEEGASVAGEDPPSHLLFATPSLLVGVTATGAVLVWDLAAGGRGGSIPSPPDPATGLDERVTSVHAHGXXXXXXLASDAPEERYVFLGFESGRVRVAQVFPVCRESGYTVEPQNTSHGAPDELLQAPGKGLGAVTAIASFGDRDGGXXXXXXXXXXFGIFGHRCGGIVVWDWVRRKRLALRSLGKSQGK---------EEDEEDEEGREVTSLALHPSGEAFAAGFASGCYAVFSASSSPSHEAGPPRWVREVGDDGSCPREGPTIVRTAVSLVRWVRVRGAGAGRTLGLVVAGGVEIEEGEEPDGVSLLVPTSEAVDARGGXXXXERTIKKKDVVTAAKAALETAVFVPFAMGQERLSHVHCVLSGAVAPTREPHRAGTRSSGELSTEDARVGGKDEPAEPTAAQEDEVEVDEELVVLGLVKWNEEFLGDDGRLHFRLASSIQACPIQTSPYVALLQLAPERFGPHLSGFAKVTAVASTPLLSSSTILDFMTCLGVEQAAAEEEGRNGSQTATAPLLRGGYLRWPDSVPPRRRDEALGTSELLVAGHSDGSLSFWECCGPASRQDAVCLSEGRVVMREVPSGAVLLGSVPAAGLGSPEEGAGSAAVTALDVWVERDHVAAAXXXXXXAGRNACWVAIGFESGDARVIVLSNRMEAGSSSPGFSSGSGGGCKXXXXXGTPLAEKPVEVSDVKLGDDGTIGDASAKGSSGGGRLLKRFLKRGAGQQPSPGDEEGAMEDTELEAAIAEARAEARAIAALEESKEGAPENAEGAEPRGT-VDDARKRESVGGEGEEQKTDDHEESDHLRQELSEAMADEGAWSGSVMPPLPKPPPPKHTPDSEKGKEEKLRLDKPPKASLIQLALRLHSHAVRCVALSFDARGSALAFVVADEAGVVSVTDVSTGSASLLPMRVPQSRPCRPSVTIGPMPSALSGGQAPESGASGALFVLLEGWLNVFDLASRDPVDFVQVPGLAPPSGDSHISGGXXXXX-AGIREDDFAGSAGRARGRERSEEAPWLACVDKRGLPLLPYASEPFSSSFSPPPRKDDAGNEADGGKVDPEDAPVHAHTIWVSPAPSRTALDDYHEHELQVLGDTPPPEPLLLIVRGATAVVLAISRRDADSVTSSVFARRSSVSPDAATFKGRSGAELVVRSRATLPPAGRSAVPPTVDGAGVCMVA 3744
            FF QVGLKS+ GEEQREGPE++GPDADAADVMGSFASPKRLGHHGSIS ACVLSYEPTN                             GLMAVAS GGLVKVFGGPGVELVLEEEGASVAGEDPPSHLLFATPSLLVGVTATGAVLVWDLAAGGRGGSIPSPPDP TGLDERVTSVHAHG       ASDA +ERYVFLGFESGRVRVAQVFPVCRESGYTVEPQNTSHGAPDELLQAPGK LGAVTAIASFGDRDG           FGIFGHRCGGIVVWDWVRRKRLALRSLGKSQGK         EE+ ED++G EVTSLALHPSGEAFAAGFA+GCYAVFS SSSPSHEA  PRWVREVGDDGSCPREGPTIVRTAVSLV+WVRVRGAG GRT GLVVAGGVEIEEGEEPDGVSLLV ++EAV ARG XXXX       DVVTAAKAALETAVFVPFAMGQERLSHVHCVLSGA APT+EPH AGTRSSG+LS EDA V GKDEP EP AAQEDEVEV EELVVLGLVKWNEEFLGDDGRLHFRLASSIQACPI+TSPYVALLQLAPERFGPHLSGFA VTAVA TPLLSSSTILDFMTCLG EQA  EEEG+NGSQT   PLLRGGYLRWPDSVP RRRDEALGTSELLVAGHSDGSLSFWECCGPASRQDAVCLSEGRVVMREVPSGAVLLGSVPAAGLGSPEEGAG+AAVTALDVWVERDHVAAA      AGRNACWVA+G ESGDARVIVLSNRMEAGSSSP F  GSGG  K     GTPLAEKPVEVSDVKLGDDGT GDASAKGSSGGGRLLKRFLKRGAGQQPS GDEEGAMEDTELEAAIA+ARAEARAI ALEES+EGAP NAE AEPRG  VDDARKRESVGGEGE Q+TDD  ESDHLRQELSEAMADEGAWSGSVMPP PK PP KHTP++E G+EEKL LD+PPKASLIQLALRLHSHAVRCVALSFDARGSALA VVADEAGVVSVTDVSTGSASLLPMRVPQSRPCRPSVTIGPMPSALSGG AP+ GASGALFVLLEGWLNVFDLASRDPVDFVQVPGLAPPS        XXXXX AGIREDDFAGSAGR R RER EE PWLACVD RGLPLLPYASEPFSSSFSPPPR+DDA  +ADGGK+DPEDAPVH+HTIWVSP PSRTALDDYHEHELQVL DTPPPEPLLL+VRGATAVVLAISRRDAD VTSSVFARR SVSPDAATFKGRSGAELVVRSR TLPPAGRSAVPPT+DG GVCMVA
Sbjct:    4 FFSQVGLKSSDGEEQREGPETNGPDADAADVMGSFASPKRLGHHGSISDACVLSYEPTNPPYSSQLGRPSMHSRCQSELLLLFCTRAQGLMAVASCGGLVKVFGGPGVELVLEEEGASVAGEDPPSHLLFATPSLLVGVTATGAVLVWDLAAGGRGGSIPSPPDPVTGLDERVTSVHAHGGGDGGGPASDAHKERYVFLGFESGRVRVAQVFPVCRESGYTVEPQNTSHGAPDELLQAPGKSLGAVTAIASFGDRDG--------CGGFGIFGHRCGGIVVWDWVRRKRLALRSLGKSQGKKEXXXXXYEEENFEDQKGHEVTSLALHPSGEAFAAGFAAGCYAVFSVSSSPSHEADLPRWVREVGDDGSCPREGPTIVRTAVSLVQWVRVRGAGVGRTSGLVVAGGVEIEEGEEPDGVSLLVLSTEAVGARGXXXXXXXXXXX-DVVTAAKAALETAVFVPFAMGQERLSHVHCVLSGAGAPTQEPHWAGTRSSGDLS-EDASVDGKDEP-EPAAAQEDEVEVVEELVVLGLVKWNEEFLGDDGRLHFRLASSIQACPIRTSPYVALLQLAPERFGPHLSGFATVTAVACTPLLSSSTILDFMTCLGAEQA--EEEGQNGSQTTAPPLLRGGYLRWPDSVPSRRRDEALGTSELLVAGHSDGSLSFWECCGPASRQDAVCLSEGRVVMREVPSGAVLLGSVPAAGLGSPEEGAGNAAVTALDVWVERDHVAAAVP----AGRNACWVAVGLESGDARVIVLSNRMEAGSSSPDFPCGSGGSSKARSGGGTPLAEKPVEVSDVKLGDDGTTGDASAKGSSGGGRLLKRFLKRGAGQQPSLGDEEGAMEDTELEAAIAQARAEARAIVALEESREGAPGNAETAEPRGAAVDDARKRESVGGEGEAQETDDQGESDHLRQELSEAMADEGAWSGSVMPPSPKRPPTKHTPEAETGEEEKLPLDEPPKASLIQLALRLHSHAVRCVALSFDARGSALALVVADEAGVVSVTDVSTGSASLLPMRVPQSRPCRPSVTIGPMPSALSGGAAPKPGASGALFVLLEGWLNVFDLASRDPVDFVQVPGLAPPSDXXXXXXXXXXXXRAGIREDDFAGSAGRTRSRERGEETPWLACVDNRGLPLLPYASEPFSSSFSPPPREDDASTDADGGKIDPEDAPVHSHTIWVSPVPSRTALDDYHEHELQVLSDTPPPEPLLLVVRGATAVVLAISRRDADGVTSSVFARRGSVSPDAATFKGRSGAELVVRSRGTLPPAGRSAVPPTIDGVGVCMVA 1274
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig829.16437.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
V-SNARE0.000e+089.58coiled-coil homology domain-containing protein n=1... [more]
Uncharacterized0.000e+085.64protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig829contigE_fasciculatus_S2_contig829:21216..25611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size3863
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-27_003330.1
Cds size3678
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842489.3545077-UTR-E_fasciculatus_S2_contig829:21215..213041696842489.3545077-UTR-E_fasciculatus_S2_contig829:21215..21304Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig829 21216..21304 -
1696842489.3655653-UTR-E_fasciculatus_S2_contig829:21413..214161696842489.3655653-UTR-E_fasciculatus_S2_contig829:21413..21416Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig829 21414..21416 -
1696842489.3948283-UTR-E_fasciculatus_S2_contig829:25518..256111696842489.3948283-UTR-E_fasciculatus_S2_contig829:25518..25611Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig829 25519..25611 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842489.3747053-CDS-E_fasciculatus_S2_contig829:21416..250101696842489.3747053-CDS-E_fasciculatus_S2_contig829:21416..25010Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig829 21417..25010 -
1696842489.3842869-CDS-E_fasciculatus_S2_contig829:25434..255181696842489.3842869-CDS-E_fasciculatus_S2_contig829:25434..25518Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig829 25435..25518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig829.16437.1prot_E_fasciculatus_S2_contig829.16437.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig829 21417..25518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig829.16437.1

>prot_E_fasciculatus_S2_contig829.16437.1 ID=prot_E_fasciculatus_S2_contig829.16437.1|Name=mRNA_E_fasciculatus_S2_contig829.16437.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=1226bp
MGSFASPKRLGHHGSISGACVLSYEPTNGLMAVASRGGLVKVFGGPGVEL
VLEEEGASVAGEDPPSHLLFATPSLLVGVTATGAVLVWDLAAGGRGGSIP
SPPDPATGLDERVTSVHAHGGGGGGGLASDAPEERYVFLGFESGRVRVAQ
VFPVCRESGYTVEPQNTSHGAPDELLQAPGKGLGAVTAIASFGDRDGGGG
GGGGGGGGFGIFGHRCGGIVVWDWVRRKRLALRSLGKSQGKEEDEEDEEG
REVTSLALHPSGEAFAAGFASGCYAVFSASSSPSHEAGPPRWVREVGDDG
SCPREGPTIVRTAVSLVRWVRVRGAGAGRTLGLVVAGGVEIEEGEEPDGV
SLLVPTSEAVDARGGGGGSERTIKKKDVVTAAKAALETAVFVPFAMGQER
LSHVHCVLSGAVAPTREPHRAGTRSSGELSTEDARVGGKDEPAEPTAAQE
DEVEVDEELVVLGLVKWNEEFLGDDGRLHFRLASSIQACPIQTSPYVALL
QLAPERFGPHLSGFAKVTAVASTPLLSSSTILDFMTCLGVEQAAAEEEGR
NGSQTATAPLLRGGYLRWPDSVPPRRRDEALGTSELLVAGHSDGSLSFWE
CCGPASRQDAVCLSEGRVVMREVPSGAVLLGSVPAAGLGSPEEGAGSAAV
TALDVWVERDHVAAAAAAAAAAGRNACWVAIGFESGDARVIVLSNRMEAG
SSSPGFSSGSGGGCKAGSGGGTPLAEKPVEVSDVKLGDDGTIGDASAKGS
SGGGRLLKRFLKRGAGQQPSPGDEEGAMEDTELEAAIAEARAEARAIAAL
EESKEGAPENAEGAEPRGTVDDARKRESVGGEGEEQKTDDHEESDHLRQE
LSEAMADEGAWSGSVMPPLPKPPPPKHTPDSEKGKEEKLRLDKPPKASLI
QLALRLHSHAVRCVALSFDARGSALAFVVADEAGVVSVTDVSTGSASLLP
MRVPQSRPCRPSVTIGPMPSALSGGQAPESGASGALFVLLEGWLNVFDLA
SRDPVDFVQVPGLAPPSGDSHISGGGGGGGAGIREDDFAGSAGRARGRER
SEEAPWLACVDKRGLPLLPYASEPFSSSFSPPPRKDDAGNEADGGKVDPE
DAPVHAHTIWVSPAPSRTALDDYHEHELQVLGDTPPPEPLLLIVRGATAV
VLAISRRDADSVTSSVFARRSSVSPDAATFKGRSGAELVVRSRATLPPAG
RSAVPPTVDGAGVCMVAAAAAGGGG*
back to top

mRNA from alignment at E_fasciculatus_S2_contig829:21216..25611-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig829.16437.1 ID=mRNA_E_fasciculatus_S2_contig829.16437.1|Name=mRNA_E_fasciculatus_S2_contig829.16437.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4396bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig829:21216..25611- (Ectocarpus fasciculatus EfasUO2)
TTTTTCGGGCAGGTCGGCCTCAAGAGCAACGCCGGCGAGGAGCAGCGGGA
AGGGCCCGAAAGCGACGGTCCGGACGCAGACGCTGCCGACGTGATGGGGT
CCTTCGCCTCCCCGAAGCGGCTGGGCCATCATGGTTCGATCAGCGGCGCT
TGTGTCTTGTCCTACGAACCAACCAACGTGAGCCTCTCCCGTTGTCCGAG
GAACCCCTCGTATACCACGTGACAGGAAATGCGGTTTCGATGTGTAGTGT
AACGGTCCTCGCTTGGCAACACGCTGCGACGCCGACACAAGAGCGGCGCC
TTGCAAGAGCATGGGCTTGTCTCGAAGCGCTCAATCGTACAGCAAAACGT
GTACCATGCAACTATCTGCATTTCGAACTTATACAGCAGGGAATTTTTGT
ATGCACCCTTTGCTTTGGGTTCCTTCCCCCTCGTCGTCCTTCCAACAAGG
CACACGTTGCCTCGAAGGTCTCACCAATACGCAACCAACTGGAGTAAACA
AACGCGCACCCGATAGCCTCCCTGCATCAGTTAACGGGAAAAACCTTCCA
TGCGTTCTTGCTGCCGATCGACGCTGCTTCTGTTGCTTCGCACGCGCTCA
GGGACTGATGGCCGTCGCCTCCCGCGGGGGTCTGGTCAAGGTATTCGGCG
GGCCGGGGGTGGAGCTGGTTCTCGAGGAGGAGGGGGCGTCGGTCGCCGGC
GAGGACCCACCGTCCCACCTGCTCTTCGCGACGCCGAGCCTCCTCGTGGG
GGTGACGGCAACGGGTGCCGTGTTGGTGTGGGACCTTGCGGCAGGAGGCC
GCGGCGGTAGCATCCCATCCCCGCCGGATCCCGCCACGGGCCTCGACGAG
CGCGTCACGTCCGTTCACGCGCACGGCGGCGGCGGCGGGGGCGGCCTCGC
CTCCGATGCTCCCGAAGAGCGGTACGTCTTCCTGGGCTTCGAGAGCGGTC
GCGTTCGCGTCGCGCAAGTTTTCCCTGTGTGTCGCGAGTCCGGCTACACA
GTGGAGCCTCAGAACACGAGCCACGGAGCACCCGATGAGCTGCTGCAAGC
GCCCGGCAAAGGGCTGGGGGCCGTCACTGCCATCGCATCTTTCGGAGATC
GGGACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGTTTGGTATT
TTTGGACACCGGTGCGGCGGGATCGTGGTCTGGGATTGGGTCCGCCGGAA
ACGACTCGCGCTCCGGAGTCTGGGCAAGTCGCAAGGCAAGGAGGAGGACG
AGGAGGACGAGGAAGGTCGCGAGGTGACGAGCCTGGCGTTGCACCCTTCC
GGCGAAGCGTTCGCGGCCGGGTTCGCGTCCGGCTGCTACGCGGTCTTCTC
CGCCTCCTCGTCGCCCTCGCACGAGGCCGGCCCGCCGCGGTGGGTGCGCG
AGGTCGGGGATGACGGCTCGTGCCCGAGGGAAGGGCCGACCATCGTGCGA
ACGGCGGTCTCCCTGGTACGGTGGGTGCGCGTGCGCGGGGCCGGGGCTGG
CAGGACGTTGGGGCTTGTCGTGGCGGGCGGCGTCGAGATCGAGGAGGGCG
AGGAGCCCGACGGGGTAAGCCTGCTGGTACCGACATCTGAGGCTGTTGAC
GCGCGCGGCGGCGGTGGCGGCAGCGAGAGGACCATAAAGAAGAAGGACGT
CGTCACGGCGGCGAAGGCCGCGCTCGAGACCGCTGTTTTCGTGCCCTTCG
CCATGGGACAGGAGAGGCTGTCCCACGTACATTGTGTTCTCTCGGGCGCC
GTGGCACCGACACGGGAGCCTCACAGGGCAGGGACGAGGTCTTCCGGCGA
GCTGTCTACTGAGGACGCGAGGGTCGGTGGCAAGGATGAACCAGCAGAAC
CAACAGCGGCGCAGGAGGACGAGGTCGAGGTAGACGAGGAGCTGGTCGTC
CTCGGGCTGGTGAAGTGGAACGAGGAGTTTCTAGGCGACGATGGAAGGCT
GCACTTTAGGCTCGCTTCGTCCATCCAGGCCTGCCCGATCCAGACGAGCC
CCTACGTGGCCCTGCTGCAGCTGGCGCCGGAGAGGTTTGGACCGCACCTG
TCGGGGTTTGCGAAGGTCACGGCGGTCGCGTCCACGCCGCTCCTGTCCTC
GTCCACGATCCTCGACTTCATGACATGCTTGGGGGTCGAACAGGCGGCGG
CGGAGGAGGAGGGTCGAAACGGCTCGCAGACCGCGACGGCCCCCCTCCTG
CGAGGCGGTTACCTCCGATGGCCCGACAGCGTCCCTCCCCGCAGGCGCGA
CGAAGCCCTCGGCACCAGCGAGCTGCTCGTCGCGGGCCACTCGGACGGGT
CGCTCAGCTTCTGGGAGTGCTGCGGGCCGGCGTCGAGGCAGGACGCGGTC
TGCCTCTCGGAGGGCAGGGTGGTCATGCGCGAGGTCCCTTCGGGGGCCGT
CCTGCTGGGCTCCGTGCCGGCCGCAGGTTTGGGGTCCCCCGAAGAGGGCG
CGGGGAGCGCCGCCGTGACCGCGCTCGACGTGTGGGTTGAGCGCGACCAC
GTCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGCGCAACGCTTGCTG
GGTGGCGATCGGCTTCGAGAGCGGGGACGCCAGGGTGATCGTTTTGTCTA
ACAGGATGGAAGCCGGGAGCAGCAGCCCAGGTTTTTCTAGCGGTAGCGGC
GGTGGCTGCAAGGCAGGGTCGGGGGGGGGCACGCCGCTGGCGGAGAAGCC
GGTCGAGGTTTCCGACGTGAAGCTGGGCGACGACGGAACGATCGGAGATG
CTTCGGCGAAAGGCAGCAGCGGCGGCGGTCGGCTGTTGAAACGGTTCTTG
AAGCGCGGAGCGGGGCAGCAGCCGTCTCCCGGGGACGAGGAGGGCGCGAT
GGAAGACACCGAGCTGGAAGCGGCTATCGCGGAGGCACGGGCAGAAGCGC
GCGCGATTGCGGCGCTCGAGGAGTCGAAGGAAGGGGCTCCGGAAAACGCT
GAAGGGGCAGAACCTCGAGGGACGGTTGACGATGCGCGAAAACGCGAATC
CGTTGGGGGGGAAGGGGAGGAGCAGAAGACGGATGACCACGAAGAGAGCG
ATCATCTTCGGCAAGAGCTTTCGGAGGCCATGGCCGACGAGGGCGCGTGG
AGCGGATCCGTCATGCCACCTTTGCCCAAACCACCGCCTCCGAAGCACAC
CCCGGATTCAGAGAAGGGAAAAGAAGAAAAGCTCCGCCTGGACAAACCCC
CGAAAGCCTCCCTGATACAGCTCGCGCTCAGGCTGCACAGCCACGCGGTT
CGGTGCGTCGCCCTGTCGTTCGACGCGCGGGGGTCGGCCCTGGCTTTCGT
CGTAGCGGACGAAGCGGGCGTCGTCTCCGTGACAGACGTGTCCACCGGCT
CCGCCTCGCTTCTGCCCATGCGCGTCCCGCAGTCCAGACCCTGCCGTCCG
AGCGTCACGATCGGGCCTATGCCGAGTGCCCTTTCGGGTGGACAAGCCCC
AGAATCTGGCGCTTCCGGGGCGCTGTTTGTCTTGCTGGAGGGATGGCTCA
ACGTCTTCGACCTTGCATCCAGGGATCCCGTCGACTTTGTTCAAGTACCT
GGGCTTGCGCCGCCGAGTGGCGATAGCCATATTAGCGGCGGCGGCGGCGG
CGGCGGAGCCGGTATTCGGGAAGATGATTTCGCCGGGTCCGCAGGGAGAG
CAAGGGGTCGCGAGCGGAGTGAAGAAGCCCCCTGGCTTGCCTGCGTGGAC
AAGCGCGGCCTGCCGCTCCTGCCGTACGCGTCGGAACCGTTCAGCTCTTC
CTTTAGCCCCCCGCCACGAAAGGATGATGCCGGCAATGAAGCCGACGGCG
GAAAGGTTGACCCAGAAGACGCCCCCGTCCACGCGCACACCATCTGGGTC
TCTCCCGCGCCCTCGCGCACCGCGCTCGACGACTACCACGAGCACGAGCT
GCAGGTTCTCGGCGACACGCCGCCGCCGGAACCGTTGTTATTGATAGTGC
GCGGGGCGACGGCAGTCGTCCTCGCTATCTCCCGGAGGGACGCCGACAGC
GTAACGTCATCAGTGTTTGCCAGGCGGAGCTCGGTCTCTCCCGACGCGGC
GACTTTCAAGGGCAGGTCGGGCGCCGAGCTGGTTGTACGGTCTCGGGCGA
CATTGCCGCCGGCAGGGAGAAGCGCGGTGCCGCCGACGGTCGACGGCGCC
GGTGTCTGCATGGTGGCGGCGGCGGCGGCGGGGGGGGGGGGCTAGAGGGT
GAGGCGGGGCGACGCGGGTGCCTCATCGTTGCCGACTCCTCTGGTTTCGT
GACGGGTCTTCTCCTTCCTTCCCTCTGCCCCGTCTTCCGCGACCGGCTTC
CTACGAGCGGCGACGATGCCGGATTCCGGAGAGGCGCGCCGTCGCTGGCG
CAGAAGTCCATGTGCAATGCCGTCGGGGAGCTCACGCTCCAAGGGG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig829:21216..25611-

>mRNA_E_fasciculatus_S2_contig829.16437.1 ID=mRNA_E_fasciculatus_S2_contig829.16437.1|Name=mRNA_E_fasciculatus_S2_contig829.16437.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=3678bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig829:21216..25611- (Ectocarpus fasciculatus EfasUO2)
ATGGGGTCCTTCGCCTCCCCGAAGCGGCTGGGCCATCATGGTTCGATCAG
CGGCGCTTGTGTCTTGTCCTACGAACCAACCAACGGACTGATGGCCGTCG
CCTCCCGCGGGGGTCTGGTCAAGGTATTCGGCGGGCCGGGGGTGGAGCTG
GTTCTCGAGGAGGAGGGGGCGTCGGTCGCCGGCGAGGACCCACCGTCCCA
CCTGCTCTTCGCGACGCCGAGCCTCCTCGTGGGGGTGACGGCAACGGGTG
CCGTGTTGGTGTGGGACCTTGCGGCAGGAGGCCGCGGCGGTAGCATCCCA
TCCCCGCCGGATCCCGCCACGGGCCTCGACGAGCGCGTCACGTCCGTTCA
CGCGCACGGCGGCGGCGGCGGGGGCGGCCTCGCCTCCGATGCTCCCGAAG
AGCGGTACGTCTTCCTGGGCTTCGAGAGCGGTCGCGTTCGCGTCGCGCAA
GTTTTCCCTGTGTGTCGCGAGTCCGGCTACACAGTGGAGCCTCAGAACAC
GAGCCACGGAGCACCCGATGAGCTGCTGCAAGCGCCCGGCAAAGGGCTGG
GGGCCGTCACTGCCATCGCATCTTTCGGAGATCGGGACGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCGGCGGGTTTGGTATTTTTGGACACCGGTGCGG
CGGGATCGTGGTCTGGGATTGGGTCCGCCGGAAACGACTCGCGCTCCGGA
GTCTGGGCAAGTCGCAAGGCAAGGAGGAGGACGAGGAGGACGAGGAAGGT
CGCGAGGTGACGAGCCTGGCGTTGCACCCTTCCGGCGAAGCGTTCGCGGC
CGGGTTCGCGTCCGGCTGCTACGCGGTCTTCTCCGCCTCCTCGTCGCCCT
CGCACGAGGCCGGCCCGCCGCGGTGGGTGCGCGAGGTCGGGGATGACGGC
TCGTGCCCGAGGGAAGGGCCGACCATCGTGCGAACGGCGGTCTCCCTGGT
ACGGTGGGTGCGCGTGCGCGGGGCCGGGGCTGGCAGGACGTTGGGGCTTG
TCGTGGCGGGCGGCGTCGAGATCGAGGAGGGCGAGGAGCCCGACGGGGTA
AGCCTGCTGGTACCGACATCTGAGGCTGTTGACGCGCGCGGCGGCGGTGG
CGGCAGCGAGAGGACCATAAAGAAGAAGGACGTCGTCACGGCGGCGAAGG
CCGCGCTCGAGACCGCTGTTTTCGTGCCCTTCGCCATGGGACAGGAGAGG
CTGTCCCACGTACATTGTGTTCTCTCGGGCGCCGTGGCACCGACACGGGA
GCCTCACAGGGCAGGGACGAGGTCTTCCGGCGAGCTGTCTACTGAGGACG
CGAGGGTCGGTGGCAAGGATGAACCAGCAGAACCAACAGCGGCGCAGGAG
GACGAGGTCGAGGTAGACGAGGAGCTGGTCGTCCTCGGGCTGGTGAAGTG
GAACGAGGAGTTTCTAGGCGACGATGGAAGGCTGCACTTTAGGCTCGCTT
CGTCCATCCAGGCCTGCCCGATCCAGACGAGCCCCTACGTGGCCCTGCTG
CAGCTGGCGCCGGAGAGGTTTGGACCGCACCTGTCGGGGTTTGCGAAGGT
CACGGCGGTCGCGTCCACGCCGCTCCTGTCCTCGTCCACGATCCTCGACT
TCATGACATGCTTGGGGGTCGAACAGGCGGCGGCGGAGGAGGAGGGTCGA
AACGGCTCGCAGACCGCGACGGCCCCCCTCCTGCGAGGCGGTTACCTCCG
ATGGCCCGACAGCGTCCCTCCCCGCAGGCGCGACGAAGCCCTCGGCACCA
GCGAGCTGCTCGTCGCGGGCCACTCGGACGGGTCGCTCAGCTTCTGGGAG
TGCTGCGGGCCGGCGTCGAGGCAGGACGCGGTCTGCCTCTCGGAGGGCAG
GGTGGTCATGCGCGAGGTCCCTTCGGGGGCCGTCCTGCTGGGCTCCGTGC
CGGCCGCAGGTTTGGGGTCCCCCGAAGAGGGCGCGGGGAGCGCCGCCGTG
ACCGCGCTCGACGTGTGGGTTGAGCGCGACCACGTCGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGGGCGCAACGCTTGCTGGGTGGCGATCGGCTTCG
AGAGCGGGGACGCCAGGGTGATCGTTTTGTCTAACAGGATGGAAGCCGGG
AGCAGCAGCCCAGGTTTTTCTAGCGGTAGCGGCGGTGGCTGCAAGGCAGG
GTCGGGGGGGGGCACGCCGCTGGCGGAGAAGCCGGTCGAGGTTTCCGACG
TGAAGCTGGGCGACGACGGAACGATCGGAGATGCTTCGGCGAAAGGCAGC
AGCGGCGGCGGTCGGCTGTTGAAACGGTTCTTGAAGCGCGGAGCGGGGCA
GCAGCCGTCTCCCGGGGACGAGGAGGGCGCGATGGAAGACACCGAGCTGG
AAGCGGCTATCGCGGAGGCACGGGCAGAAGCGCGCGCGATTGCGGCGCTC
GAGGAGTCGAAGGAAGGGGCTCCGGAAAACGCTGAAGGGGCAGAACCTCG
AGGGACGGTTGACGATGCGCGAAAACGCGAATCCGTTGGGGGGGAAGGGG
AGGAGCAGAAGACGGATGACCACGAAGAGAGCGATCATCTTCGGCAAGAG
CTTTCGGAGGCCATGGCCGACGAGGGCGCGTGGAGCGGATCCGTCATGCC
ACCTTTGCCCAAACCACCGCCTCCGAAGCACACCCCGGATTCAGAGAAGG
GAAAAGAAGAAAAGCTCCGCCTGGACAAACCCCCGAAAGCCTCCCTGATA
CAGCTCGCGCTCAGGCTGCACAGCCACGCGGTTCGGTGCGTCGCCCTGTC
GTTCGACGCGCGGGGGTCGGCCCTGGCTTTCGTCGTAGCGGACGAAGCGG
GCGTCGTCTCCGTGACAGACGTGTCCACCGGCTCCGCCTCGCTTCTGCCC
ATGCGCGTCCCGCAGTCCAGACCCTGCCGTCCGAGCGTCACGATCGGGCC
TATGCCGAGTGCCCTTTCGGGTGGACAAGCCCCAGAATCTGGCGCTTCCG
GGGCGCTGTTTGTCTTGCTGGAGGGATGGCTCAACGTCTTCGACCTTGCA
TCCAGGGATCCCGTCGACTTTGTTCAAGTACCTGGGCTTGCGCCGCCGAG
TGGCGATAGCCATATTAGCGGCGGCGGCGGCGGCGGCGGAGCCGGTATTC
GGGAAGATGATTTCGCCGGGTCCGCAGGGAGAGCAAGGGGTCGCGAGCGG
AGTGAAGAAGCCCCCTGGCTTGCCTGCGTGGACAAGCGCGGCCTGCCGCT
CCTGCCGTACGCGTCGGAACCGTTCAGCTCTTCCTTTAGCCCCCCGCCAC
GAAAGGATGATGCCGGCAATGAAGCCGACGGCGGAAAGGTTGACCCAGAA
GACGCCCCCGTCCACGCGCACACCATCTGGGTCTCTCCCGCGCCCTCGCG
CACCGCGCTCGACGACTACCACGAGCACGAGCTGCAGGTTCTCGGCGACA
CGCCGCCGCCGGAACCGTTGTTATTGATAGTGCGCGGGGCGACGGCAGTC
GTCCTCGCTATCTCCCGGAGGGACGCCGACAGCGTAACGTCATCAGTGTT
TGCCAGGCGGAGCTCGGTCTCTCCCGACGCGGCGACTTTCAAGGGCAGGT
CGGGCGCCGAGCTGGTTGTACGGTCTCGGGCGACATTGCCGCCGGCAGGG
AGAAGCGCGGTGCCGCCGACGGTCGACGGCGCCGGTGTCTGCATGGTGGC
GGCGGCGGCGGCGGGGGGGGGGGGCTAG
back to top