mRNA_E_fasciculatus_S2_contig8289.16433.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8289.16433.1
Unique NamemRNA_E_fasciculatus_S2_contig8289.16433.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8289.16433.1 vs.
Match: Filamentous (temperature sensitive Z n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY0_ECTSI)

HSP 1 Score: 432 bits (1111), Expect = 7.640e-149
Identity = 235/236 (99.58%), Postives = 236/236 (100.00%), Query Frame = 1
Query:    4 AAEESKEEILEMIEGSHMVFITAGMGGGTGTGAAPVIAEACMEAGILTVAVVTKPFRFEGSLRMRLAEEGLRFLASTVDTLIVIPNQNLFQMVDKQTSLLDSFRLADDVLLAGVRSVTDLMVNPGLINLDFADVQSVMAGMGNAMMGTGEAEGEGRAIRAAEDALSNPLLGELSAKTAKGLLVNITGGEDLTLFEVDEAASRVTDEVDDSSANIIVGSTYDSGLSGAMRVSVVATG 711
            AAEESKEEILEMIEGSHMVFITAGMGGGTGTGAAPVIAEACMEAGILTVAVVTKPFRFEGSLRMRLAEEGLRFLASTVDTLIVIPNQNLFQMVDKQTSLLDSFRLADDVLLAGVRSVTDLMVNPGLINLDFADVQSVMAGMGNAMMGTGEAEGEGRAIRAAEDALSNPLLGELSAKTAKGLLVNITGGEDLTLFEVDEAASRVTDEVDDSSANIIVGSTYDSGL+GAMRVSVVATG
Sbjct:  239 AAEESKEEILEMIEGSHMVFITAGMGGGTGTGAAPVIAEACMEAGILTVAVVTKPFRFEGSLRMRLAEEGLRFLASTVDTLIVIPNQNLFQMVDKQTSLLDSFRLADDVLLAGVRSVTDLMVNPGLINLDFADVQSVMAGMGNAMMGTGEAEGEGRAIRAAEDALSNPLLGELSAKTAKGLLVNITGGEDLTLFEVDEAASRVTDEVDDSSANIIVGSTYDSGLNGAMRVSVVATG 474          
BLAST of mRNA_E_fasciculatus_S2_contig8289.16433.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJY3_9STRA)

HSP 1 Score: 333 bits (855), Expect = 1.750e-112
Identity = 175/236 (74.15%), Postives = 204/236 (86.44%), Query Frame = 1
Query:    4 AAEESKEEILEMIEGSHMVFITAGMGGGTGTGAAPVIAEACMEAGILTVAVVTKPFRFEGSLRMRLAEEGLRFLASTVDTLIVIPNQNLFQMVDKQTSLLDSFRLADDVLLAGVRSVTDLMVNPGLINLDFADVQSVMAGMGNAMMGTGEAEGEGRAIRAAEDALSNPLLGELSAKTAKGLLVNITGGEDLTLFEVDEAASRVTDEVDDSSANIIVGSTYDSGLSGAMRVSVVATG 711
            AA ES+++I+  I+G+HMVFITAGMGGGTGTGAAPV+AE C+E  ILTVAVVTKPF FEG  R RLA EG+  L    DTLIVIPNQN+FQ++D +TSL +SFRLADDVLLAGVRSVTDLMV+PGLINLDFADVQ+VM GMGNAMMG+G AEGE RAI+AA+DAL NPLLGE+S ++AKG+LVNITGG DLTLFEVD+AA R+T+EV+D +ANII GS YDS + G MRVSVVATG
Sbjct:   69 AALESRDDIMSFIDGAHMVFITAGMGGGTGTGAAPVVAEMCLEKDILTVAVVTKPFSFEGRHRARLATEGVNTLEQVTDTLIVIPNQNIFQLIDDKTSLAESFRLADDVLLAGVRSVTDLMVSPGLINLDFADVQAVMKGMGNAMMGSGVAEGEDRAIQAAQDALQNPLLGEMSVESAKGMLVNITGGSDLTLFEVDKAAQRITEEVEDDAANIIFGSAYDSSMEGKMRVSVVATG 304          
BLAST of mRNA_E_fasciculatus_S2_contig8289.16433.1 vs.
Match: Cell (division protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYP0_9STRA)

HSP 1 Score: 337 bits (864), Expect = 2.610e-111
Identity = 181/244 (74.18%), Postives = 210/244 (86.07%), Query Frame = 1
Query:    4 AAEESKEEILEMIEGSHMVFITAGMGGGTGTGAAPVIAEACMEAGILTVAVVTKPFRFEGSLRMRLAEEGLRFLASTVDTLIVIPNQNLFQMVDKQTSLLDSFRLADDVLLAGVRSVTDLMVNPGLINLDFADVQSVMAGMGNAMMGTGEAEGEGRAIRAAEDALSNPLLGELSAKTAKGLLVNITGGEDLTLFEVDEAASRVTDEVDDSSANIIVGSTYDSGLSG--------AMRVSVVATG 711
            A EESK E+LE I  SHMVFITAGMGGGTGTGAAP+IA+ C EAGILTVAVVT+PFRFEGS RMRLAEEGLR L  +VDTL++IPNQNLF+MVD  T+LLD+FRLADDVLLAGV+SVTDLM  PGLINLDFADVQSVM+GMGNA+MGTG+A GE RA+RAAEDAL NPLLG++S K+AKG+LVNITGG D+TLFEVD+AA RVT+EV+D  ANII GS Y++ L+G        ++RVS+VATG
Sbjct:  230 AGEESKAELLERIGDSHMVFITAGMGGGTGTGAAPIIAKTCHEAGILTVAVVTRPFRFEGSHRMRLAEEGLRRLQDSVDTLLIIPNQNLFKMVDPSTTLLDAFRLADDVLLAGVKSVTDLMTMPGLINLDFADVQSVMSGMGNAIMGTGQASGEDRALRAAEDALQNPLLGQVSIKSAKGMLVNITGGPDMTLFEVDKAAQRVTEEVEDEHANIIFGSAYEASLAGTKEDGAGGSIRVSIVATG 473          
BLAST of mRNA_E_fasciculatus_S2_contig8289.16433.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJ02_9STRA)

HSP 1 Score: 333 bits (855), Expect = 1.010e-110
Identity = 175/236 (74.15%), Postives = 204/236 (86.44%), Query Frame = 1
Query:    4 AAEESKEEILEMIEGSHMVFITAGMGGGTGTGAAPVIAEACMEAGILTVAVVTKPFRFEGSLRMRLAEEGLRFLASTVDTLIVIPNQNLFQMVDKQTSLLDSFRLADDVLLAGVRSVTDLMVNPGLINLDFADVQSVMAGMGNAMMGTGEAEGEGRAIRAAEDALSNPLLGELSAKTAKGLLVNITGGEDLTLFEVDEAASRVTDEVDDSSANIIVGSTYDSGLSGAMRVSVVATG 711
            AA ES+++I+  I+G+HMVFITAGMGGGTGTGAAPV+AE C+E  ILTVAVVTKPF FEG  R RLA EG+  L    DTLIVIPNQN+FQ++D +TSL +SFRLADDVLLAGVRSVTDLMV+PGLINLDFADVQ+VM GMGNAMMG+G AEGE RAI+AA+DAL NPLLGE+S ++AKG+LVNITGG DLTLFEVD+AA R+T+EV+D +ANII GS YDS + G MRVSVVATG
Sbjct:  193 AALESRDDIMSFIDGAHMVFITAGMGGGTGTGAAPVVAEMCLEKDILTVAVVTKPFSFEGRHRARLATEGVNTLEQVTDTLIVIPNQNIFQLIDDKTSLAESFRLADDVLLAGVRSVTDLMVSPGLINLDFADVQAVMKGMGNAMMGSGVAEGEDRAIQAAQDALQNPLLGEMSVESAKGMLVNITGGSDLTLFEVDKAAQRITEEVEDDAANIIFGSAYDSSMEGKMRVSVVATG 428          
BLAST of mRNA_E_fasciculatus_S2_contig8289.16433.1 vs.
Match: Tubulin/FtsZ, (GTPase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z440_9STRA)

HSP 1 Score: 322 bits (824), Expect = 1.390e-107
Identity = 169/236 (71.61%), Postives = 203/236 (86.02%), Query Frame = 1
Query:    4 AAEESKEEILEMIEGSHMVFITAGMGGGTGTGAAPVIAEACMEAGILTVAVVTKPFRFEGSLRMRLAEEGLRFLASTVDTLIVIPNQNLFQMVDKQTSLLDSFRLADDVLLAGVRSVTDLMVNPGLINLDFADVQSVMAGMGNAMMGTGEAEGEGRAIRAAEDALSNPLLGELSAKTAKGLLVNITGGEDLTLFEVDEAASRVTDEVDDSSANIIVGSTYDSGLSGAMRVSVVATG 711
            AA ES++E+LE I G+HMVFITAGMGGGTGTGAAPVIAEAC + G+LTVAVVTKPFRFEG+ RMRLA+EGL ++    D+LIVIPNQNLF++V+  TSL+++F LADDVLL+GVRS++DLM+ PGLINLDFADVQ+VMA MG+AMMGTGEAEGE RA+ AAE AL NPLLG+LS ++AKGLLVNI GG DLTLFE D AA+R+TDEV++ +ANII GS +   L G +RVSVVATG
Sbjct:   71 AALESRDEVLEYISGAHMVFITAGMGGGTGTGAAPVIAEACKQEGVLTVAVVTKPFRFEGTHRMRLADEGLSYMRQATDSLIVIPNQNLFKLVEPGTSLVEAFALADDVLLSGVRSISDLMLTPGLINLDFADVQAVMADMGSAMMGTGEAEGENRAVLAAEGALRNPLLGDLSVRSAKGLLVNIAGGSDLTLFEADAAATRITDEVENENANIIFGSAHVPSLEGRIRVSVVATG 306          
BLAST of mRNA_E_fasciculatus_S2_contig8289.16433.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CQX4_9STRA)

HSP 1 Score: 323 bits (827), Expect = 5.090e-107
Identity = 165/237 (69.62%), Postives = 201/237 (84.81%), Query Frame = 1
Query:    1 QAAEESKEEILEMIEGSHMVFITAGMGGGTGTGAAPVIAEACMEAGILTVAVVTKPFRFEGSLRMRLAEEGLRFLASTVDTLIVIPNQNLFQMVDKQTSLLDSFRLADDVLLAGVRSVTDLMVNPGLINLDFADVQSVMAGMGNAMMGTGEAEGEGRAIRAAEDALSNPLLGELSAKTAKGLLVNITGGEDLTLFEVDEAASRVTDEVDDSSANIIVGSTYDSGLSGAMRVSVVATG 711
            QAA ES+E+I+  +EGSHMVF+TAGMGGGTGTGAAPVI EAC+EAGILTV VVTKPF FEG  R RLA EGL  +    DTLIVIPNQN+FQ+ D+ T L ++FR+ADDVLLAGVRS+TDLM+ PGLINLDFAD+Q++M GMGNAMMG+G+AEGE RA+ A  DAL NPLLG+LS ++AKGLLVNITGG D+TLFE+D+AA+++ +EV D SANII GST++  ++G +RVSVVATG
Sbjct:  150 QAALESREDIMRFVEGSHMVFVTAGMGGGTGTGAAPVICEACIEAGILTVGVVTKPFTFEGKHRARLAHEGLSIMQQVTDTLIVIPNQNIFQLTDEDTPLEEAFRIADDVLLAGVRSITDLMLYPGLINLDFADIQAIMKGMGNAMMGSGQAEGENRAVTAVMDALHNPLLGDLSVQSAKGLLVNITGGSDMTLFEIDKAANKILEEVKDDSANIIFGSTFEETMNGQIRVSVVATG 386          
BLAST of mRNA_E_fasciculatus_S2_contig8289.16433.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDM4_PYTOL)

HSP 1 Score: 321 bits (823), Expect = 4.380e-106
Identity = 170/237 (71.73%), Postives = 206/237 (86.92%), Query Frame = 1
Query:    1 QAAEESKEEILEMIEGSHMVFITAGMGGGTGTGAAPVIAEACMEAGILTVAVVTKPFRFEGSLRMRLAEEGLRFLASTVDTLIVIPNQNLFQMVDKQTSLLDSFRLADDVLLAGVRSVTDLMVNPGLINLDFADVQSVMAGMGNAMMGTGEAEGEGRAIRAAEDALSNPLLGELSAKTAKGLLVNITGGEDLTLFEVDEAASRVTDEVDDSSANIIVGSTYDSGLSGAMRVSVVATG 711
            +AAE + +EI+E I+G++M+F+TAGMGGGTGTGAAPVIA+A M+AGILTVAVVTKPFRFEG+ R +LAE GL  L  +VDT+IVIPNQNLF M + +TSL+D+FR+ADDVLL GV++V+DLMV PGLINLDFADV SVM+ MGNAMMG+GEAEGE RA+ AAE AL+NPLLG +S K AKG+LVNITGG DLTLFEVDEAA+RVT+E++D  ANII GST+D  L+G +RVSVVATG
Sbjct:  173 EAAEAAIDEIMERIQGANMMFVTAGMGGGTGTGAAPVIAQAAMDAGILTVAVVTKPFRFEGNNRSKLAEHGLAELRQSVDTMIVIPNQNLFNMSNDRTSLMDAFRMADDVLLDGVKNVSDLMVMPGLINLDFADVNSVMSNMGNAMMGSGEAEGENRALEAAEAALANPLLGNISIKDAKGMLVNITGGSDLTLFEVDEAAARVTEELEDPHANIIFGSTFDDSLNGKLRVSVVATG 409          
BLAST of mRNA_E_fasciculatus_S2_contig8289.16433.1 vs.
Match: Cell (division protein FtsZ n=26 Tax=Phytophthora TaxID=4783 RepID=W2MYF2_PHYPR)

HSP 1 Score: 319 bits (817), Expect = 4.020e-105
Identity = 167/237 (70.46%), Postives = 206/237 (86.92%), Query Frame = 1
Query:    1 QAAEESKEEILEMIEGSHMVFITAGMGGGTGTGAAPVIAEACMEAGILTVAVVTKPFRFEGSLRMRLAEEGLRFLASTVDTLIVIPNQNLFQMVDKQTSLLDSFRLADDVLLAGVRSVTDLMVNPGLINLDFADVQSVMAGMGNAMMGTGEAEGEGRAIRAAEDALSNPLLGELSAKTAKGLLVNITGGEDLTLFEVDEAASRVTDEVDDSSANIIVGSTYDSGLSGAMRVSVVATG 711
            +AAE + +EILE ++G++M+F+TAGMGGGTGTGAAPVIA+A +EAGILTVAVVTKPFRFEG+ R +LA +GL  L  +VDT++VIPNQNLF M +++TSL+D+FR+AD+VLL GV++++DLMV PGLINLDFADVQSVM  MGNAMMG+GEA+GE RA+ AAEDAL+NPLLG++S K AKG++VNITGG DLTLFEVDEAA RVT E+DD  ANII GST+D  L G +RVSVVATG
Sbjct:  177 EAAETAIDEILERVQGANMMFVTAGMGGGTGTGAAPVIAQAALEAGILTVAVVTKPFRFEGNNRAKLAAQGLAELKDSVDTMLVIPNQNLFNMSNERTSLMDAFRMADNVLLDGVKNISDLMVMPGLINLDFADVQSVMQNMGNAMMGSGEADGENRALCAAEDALANPLLGDISIKDAKGMIVNITGGSDLTLFEVDEAAERVTRELDDPHANIIFGSTFDDSLGGKLRVSVVATG 413          
BLAST of mRNA_E_fasciculatus_S2_contig8289.16433.1 vs.
Match: Uncharacterized (protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3HBQ2_PHYRM)

HSP 1 Score: 323 bits (827), Expect = 5.540e-105
Identity = 167/237 (70.46%), Postives = 208/237 (87.76%), Query Frame = 1
Query:    1 QAAEESKEEILEMIEGSHMVFITAGMGGGTGTGAAPVIAEACMEAGILTVAVVTKPFRFEGSLRMRLAEEGLRFLASTVDTLIVIPNQNLFQMVDKQTSLLDSFRLADDVLLAGVRSVTDLMVNPGLINLDFADVQSVMAGMGNAMMGTGEAEGEGRAIRAAEDALSNPLLGELSAKTAKGLLVNITGGEDLTLFEVDEAASRVTDEVDDSSANIIVGSTYDSGLSGAMRVSVVATG 711
            +AAE + +EILE ++G++M+F+TAGMGGGTGTGAAP+IA+A ++AGILTVAVVTKPFRFEGS R +LAE+GL  L  +VDT++VIPNQNLF M +++TSL+D+FR+AD+VLL GV++++DLMV PGLINLDFADVQSVM  MGNAMMG+GEA+G+ RA+RAAEDAL+NPLLG++S K AKG++VNITGG DLTLFEVDEAA RVT E+DD  ANII GST+D  L G +RVSVVATG
Sbjct:  305 EAAEAAIDEILERVQGANMMFVTAGMGGGTGTGAAPIIAQAALDAGILTVAVVTKPFRFEGSNRAKLAEQGLAELKDSVDTMLVIPNQNLFNMSNERTSLMDAFRMADNVLLDGVKNISDLMVMPGLINLDFADVQSVMQNMGNAMMGSGEADGDNRALRAAEDALANPLLGDISIKDAKGMIVNITGGSDLTLFEVDEAAERVTRELDDPHANIIFGSTFDDSLDGKLRVSVVATG 541          
BLAST of mRNA_E_fasciculatus_S2_contig8289.16433.1 vs.
Match: Cell (division protein FtsZ n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TXC6_9STRA)

HSP 1 Score: 314 bits (805), Expect = 1.450e-103
Identity = 166/236 (70.34%), Postives = 204/236 (86.44%), Query Frame = 1
Query:    4 AAEESKEEILEMIEGSHMVFITAGMGGGTGTGAAPVIAEACMEAGILTVAVVTKPFRFEGSLRMRLAEEGLRFLASTVDTLIVIPNQNLFQMVDKQTSLLDSFRLADDVLLAGVRSVTDLMVNPGLINLDFADVQSVMAGMGNAMMGTGEAEGEGRAIRAAEDALSNPLLGELSAKTAKGLLVNITGGEDLTLFEVDEAASRVTDEVDDSSANIIVGSTYDSGLSGAMRVSVVATG 711
            AAE S +EI+E I  ++M+F+TAGMGGGTGTGAAPVIA+A +++GILTV VVTKPFRFEGS RM+LA++GL  L  +VDT+IVIPNQNLF M +++TSL+D+FR+ADDVLL+GV+++TDLMV PGLINLDFADVQSVM  MG AMMG+GEAEG+ RA+RAAE AL NPLLG++S K AKG+LVNITGG D+TLFEVD AA RVT EV+D  ANII GS++DS ++G +RVSVVATG
Sbjct:  157 AAEASLDEIMERIGNANMMFVTAGMGGGTGTGAAPVIAQAVLDSGILTVGVVTKPFRFEGSHRMKLADQGLHELKQSVDTMIVIPNQNLFNMSNEKTSLMDAFRIADDVLLSGVKNITDLMVMPGLINLDFADVQSVMTRMGPAMMGSGEAEGDNRALRAAEAALYNPLLGDVSVKAAKGMLVNITGGPDMTLFEVDAAAERVTQEVEDPLANIIFGSSFDSAMAGRIRVSVVATG 392          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8289.16433.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Filamentous7.640e-14999.58temperature sensitive Z n=2 Tax=Ectocarpus TaxID=2... [more]
Hypothetical1.750e-11274.15protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Cell2.610e-11174.18division protein n=2 Tax=Monodopsidaceae TaxID=425... [more]
Hypothetical1.010e-11074.15protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Tubulin/FtsZ,1.390e-10771.61GTPase domain-containing protein n=1 Tax=Tribonema... [more]
Hypothetical5.090e-10769.62protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Uncharacterized4.380e-10671.73protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Cell4.020e-10570.46division protein FtsZ n=26 Tax=Phytophthora TaxID=... [more]
Uncharacterized5.540e-10570.46protein n=3 Tax=Phytophthora TaxID=4783 RepID=H3HB... [more]
Cell1.450e-10370.34division protein FtsZ n=2 Tax=Aphanomyces TaxID=10... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8289contigE_fasciculatus_S2_contig8289:16..2766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score434.5
Seed ortholog evalue3.2e-119
Seed eggNOG ortholog2880.D7FPY0
Model size711
KEGG koko:K03531
KEGG Pathwayko04112,map04112
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.chloroplast fission
EggNOG OGs2QRFN@2759,COG0206@1
Cds size711
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02048,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842488.9382293-CDS-E_fasciculatus_S2_contig8289:15..1801696842488.9382293-CDS-E_fasciculatus_S2_contig8289:15..180Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8289 16..180 +
1696842488.9647899-CDS-E_fasciculatus_S2_contig8289:492..6411696842488.9647899-CDS-E_fasciculatus_S2_contig8289:492..641Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8289 493..641 +
1696842488.9756055-CDS-E_fasciculatus_S2_contig8289:1084..11781696842488.9756055-CDS-E_fasciculatus_S2_contig8289:1084..1178Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8289 1085..1178 +
1696842488.9868004-CDS-E_fasciculatus_S2_contig8289:1831..19541696842488.9868004-CDS-E_fasciculatus_S2_contig8289:1831..1954Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8289 1832..1954 +
1696842489.0051565-CDS-E_fasciculatus_S2_contig8289:2586..27661696842489.0051565-CDS-E_fasciculatus_S2_contig8289:2586..2766Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8289 2587..2766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8289.16433.1prot_E_fasciculatus_S2_contig8289.16433.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8289 16..2766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8289.16433.1

>prot_E_fasciculatus_S2_contig8289.16433.1 ID=prot_E_fasciculatus_S2_contig8289.16433.1|Name=mRNA_E_fasciculatus_S2_contig8289.16433.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=237bp
QAAEESKEEILEMIEGSHMVFITAGMGGGTGTGAAPVIAEACMEAGILTV
AVVTKPFRFEGSLRMRLAEEGLRFLASTVDTLIVIPNQNLFQMVDKQTSL
LDSFRLADDVLLAGVRSVTDLMVNPGLINLDFADVQSVMAGMGNAMMGTG
EAEGEGRAIRAAEDALSNPLLGELSAKTAKGLLVNITGGEDLTLFEVDEA
ASRVTDEVDDSSANIIVGSTYDSGLSGAMRVSVVATG
back to top

mRNA from alignment at E_fasciculatus_S2_contig8289:16..2766+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8289.16433.1 ID=mRNA_E_fasciculatus_S2_contig8289.16433.1|Name=mRNA_E_fasciculatus_S2_contig8289.16433.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2751bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8289:16..2766+ (Ectocarpus fasciculatus EfasUO2)
CAGGCTGCAGAGGAGTCCAAGGAGGAGATCTTGGAGATGATCGAGGGGTC GCACATGGTTTTCATCACCGCGGGGATGGGAGGAGGCACGGGGACCGGGG CTGCGCCGGTTATCGCGGAGGCTTGCATGGAGGCCGGCATCCTTACGGTT GCCGTCGTCACCAAGGTACAGAATACCACCACCACCACCACCACCACAGA GTTGGAGCCCCGCAGACAAGAAACATGTCGGTCGATGGGGTAGGGGGGCA TCTTGGTGTTGCTTGATCAGAGTATCGACCGCGCCAGCTCGCGGACCCGG TGAACGCAACACACAACCTATTTAGTATCCCCCTTCAGTCAAAATCTACT TGCCATGTTCGGAGAGTGCCCGGTTTCGTCCTACCATGGTACCTTAATTG TTTTCGCTCGTAACTACTGCTGTATTCCGTGTTCGTCCGCACAACACTTT GATGTCACGGGTCGTGTCACGACGCAGCCGTTCCGCTTCGAGGGTAGCCT CCGGATGCGCCTCGCCGAGGAGGGCCTGCGTTTCCTCGCCTCGACGGTGG ACACCCTGATCGTCATCCCCAACCAGAACCTGTTTCAGATGGTGGACAAG CAGACGTCGTTGCTGGATTCCTTCAGGTCCGTTGTTGTTGTTGCGGCTGT TGATGCTGTTGTTGTTGCTGCGACTGCTGCCTCTGCTGTTTTGATTTGGT TTTGACAGTAGCCCGTCACCAGAGCCTAGCCCGTGACGACAAAAGTTGCG CGCGTGTGTTAAAGCTGTTGACTGCTGTGGGGAACAGCTAGTGAGAGTGT GTGGCAAGGTGCGCCTTGTTCAGATACGTGTGTCTCGTCACCATTGGGCT CTGACAGAGTTTCTTGCTTTTTCCGGGACGTCTTTTCATCGACCAACCGG TTCGAACTATCGAACGAAGTACACGCTTACGCTCGGCACTACCGCTGCCT CCCGAGGGACAAGCAAGGACTCGTTCCACCAGCATTTTCCTGTGTAGCAG CACTCGTATTATCGCAACGCTATCCTCGCTTCCAGCGTGACGCTCTCTTC TGGGTGCTTTGCTTGACAGGCTCGCCGACGACGTTCTTCTGGCGGGAGTC CGAAGCGTGACGGACCTCATGGTTAACCCGGGGCTGATCAACCTCGATTT CGCGGACGTTCAGGTGATCGGTCGTGAGCACGCGACCGGATACACAAACG CCCACACAGTAACTTTGTTTGTTGTCGTTTGGGCTTTGCTTTAGCCGGTG TGGGGTAGCTACGACCGCCGCTGTGTTCGTGTTTCTTGCGTGTGTGAGTG AGTGAACGAGGCCGGATTACTGATCGGATTCGGTTGTCCGACAGCGTAAA TTTAGCAGAACATCTTTTGTACACATAGCGTAGAGGGGTGGTGCGGATCG AAGCGTTGATGCACAACGTCGGAAGCTGCTCGGGTTTTTCGTGATCGGCC TCGCGGACTTTGCCTGCCAGAACGAACACCAACAGCAGTGTACTTGTCCG CATTACAAAATGGACAAATCGACTGGGTTTTGAGTATACTTCGAAGTATT AGGTTTGTCTCGTCTGCGAGGACTCTCTTGGGAGGTTGGTCCACGTCTCT CGTGCAATATCAATATTTAGTAGACAACAGTCCCGGGTTTGTATCGTTTT TTTTTTTTAGTTTTCAGTTGTGGGGGCGCAATATGTTGTTTCCCCGTTAT CTTGTTCATTGGCGGGGCTCGCTAATGATTAGCCATTGCACGAACCATTT CCACATTTGTCTTGGTCGTTTTGCCCCCCCCCTCTCTTGGTGTGTGTTGT GTGTTTGGTGCATAAGTCGGTGATGGCCGGAATGGGCAACGCCATGATGG GTACGGGGGAGGCCGAGGGGGAGGGTCGAGCGATACGGGCGGCCGAGGAC GCGCTCAGCAATCCCTTGCTCGGGGAGCTGTCGGCGAAGGTGCGGCGATG TTCTGGCTTTCTAAGTCTCTAAGTCGTAGTGGGACCAGCACGGATATTGG ACGGTACTGAGCGGAGACAGGAGCAGTTTTTATTGTGAAGACATCATCAA CAACAACAGCAACAAGGATTCGCGGACAGTAACGCGACCCCGTTCGCAAA ATCTCGCCGCCAACACGATTTTCTCGGGAGTTTGGCGGCGTTTCGTTTTC TGTGTTCGGGGGTTGTCTCGGGATTTCGTCGGTGGGCGGCTATTCCGAGA GGGCCTAGACACGGCCGTCGGAGTGCACCGATGCGTGGAGATCACATACG GCTAGTGTAAGTGTTGTGTTTGTCTAGTCGGTGACTCATGGCGATCACCG TAACTCGTCACGTAGCCGGTATGTTGGAGTTGTTGTGCAATGGTAGCCTG GGGGTGCATACAAGCGCAGCGCACCGTAGCACCCCAACAATGTAAGCACA GCCCAGACGTATCAAGGCCGTGTCGCAAAAGACTCTGTTGGATCAAAGAG CGGTAACGTTAACGTTTACCTCCCTTCCTTGTGCTTCTCTTCTCTCCCCC CCCCTCCCCCCCCGGAATCACCTTTTTATCACTTCTCACGTGGTGCAACA TACACAACACCCGCGAGGCAGACGGCCAAGGGTCTCCTGGTGAACATCAC CGGCGGCGAAGACCTGACCCTGTTCGAGGTGGACGAGGCGGCCTCCAGGG TGACCGACGAGGTCGACGACAGCTCGGCCAACATCATCGTGGGGTCTACC TACGACTCCGGGCTCAGCGGCGCCATGCGCGTGTCTGTCGTAGCCACGGG T
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8289:16..2766+

>mRNA_E_fasciculatus_S2_contig8289.16433.1 ID=mRNA_E_fasciculatus_S2_contig8289.16433.1|Name=mRNA_E_fasciculatus_S2_contig8289.16433.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=711bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8289:16..2766+ (Ectocarpus fasciculatus EfasUO2)
CAGGCTGCAGAGGAGTCCAAGGAGGAGATCTTGGAGATGATCGAGGGGTC
GCACATGGTTTTCATCACCGCGGGGATGGGAGGAGGCACGGGGACCGGGG
CTGCGCCGGTTATCGCGGAGGCTTGCATGGAGGCCGGCATCCTTACGGTT
GCCGTCGTCACCAAGCCGTTCCGCTTCGAGGGTAGCCTCCGGATGCGCCT
CGCCGAGGAGGGCCTGCGTTTCCTCGCCTCGACGGTGGACACCCTGATCG
TCATCCCCAACCAGAACCTGTTTCAGATGGTGGACAAGCAGACGTCGTTG
CTGGATTCCTTCAGGCTCGCCGACGACGTTCTTCTGGCGGGAGTCCGAAG
CGTGACGGACCTCATGGTTAACCCGGGGCTGATCAACCTCGATTTCGCGG
ACGTTCAGTCGGTGATGGCCGGAATGGGCAACGCCATGATGGGTACGGGG
GAGGCCGAGGGGGAGGGTCGAGCGATACGGGCGGCCGAGGACGCGCTCAG
CAATCCCTTGCTCGGGGAGCTGTCGGCGAAGACGGCCAAGGGTCTCCTGG
TGAACATCACCGGCGGCGAAGACCTGACCCTGTTCGAGGTGGACGAGGCG
GCCTCCAGGGTGACCGACGAGGTCGACGACAGCTCGGCCAACATCATCGT
GGGGTCTACCTACGACTCCGGGCTCAGCGGCGCCATGCGCGTGTCTGTCG
TAGCCACGGGT
back to top