mRNA_E_fasciculatus_S2_contig8284.16429.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8284.16429.1 vs.
Match: SMK-1 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI53_ECTSI) HSP 1 Score: 353 bits (907), Expect = 7.190e-117 Identity = 173/195 (88.72%), Postives = 180/195 (92.31%), Query Frame = 1
Query: 1 VRDVFLLLNEPETGSGGKKRRDILMFLRELFNMAKTLQVAPRDAFYRHLWDEVPLFEVFIPVLKDPAASVMERTACMEVLLASLTHDPALFRTHILKEGGHPLLPPTVNNQAKSTSAAGGGGLGKGEGTRICRMALDTETMEGQPDRDTFLGVFYEHYVHWLVEPFWLGDLSNEGMGANRASAKGPFKRGEGGGQ 585
VRDVFLLLNEPE G GG+KRRDILMFLRELFNMAKTLQVAPRDAFYRHLWDEVPLFEVFIPVLKDP ASVMERTACMEVLLASLTHDPALFRTHILKEGGHPLLPPTVNNQAKSTS+A GGGLG G +ICRMALDTETMEGQPDRDTFLGVFYEHYVHWLVEPFW+GDLSNEGMGAN A+G K G+G G+
Sbjct: 291 VRDVFLLLNEPENGRGGQKRRDILMFLRELFNMAKTLQVAPRDAFYRHLWDEVPLFEVFIPVLKDPDASVMERTACMEVLLASLTHDPALFRTHILKEGGHPLLPPTVNNQAKSTSSAAGGGLGSG--AKICRMALDTETMEGQPDRDTFLGVFYEHYVHWLVEPFWVGDLSNEGMGANGEVARGSSKGGKGDGK 483
BLAST of mRNA_E_fasciculatus_S2_contig8284.16429.1 vs.
Match: SMK-1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ6_9PHAE) HSP 1 Score: 120 bits (301), Expect = 4.500e-28 Identity = 55/69 (79.71%), Postives = 59/69 (85.51%), Query Frame = 1
Query: 379 EGTRICRMALDTETMEGQPDRDTFLGVFYEHYVHWLVEPFWLGDLSNEGMGANRASAKGPFKRGEGGGQ 585
+ ICRMALDTETMEGQPDRDTFLGVFYEHYVHWLVEPFWLGDLSNEGMGAN A+G K G+G G+
Sbjct: 487 QAAEICRMALDTETMEGQPDRDTFLGVFYEHYVHWLVEPFWLGDLSNEGMGANGEVARGSSKGGKGDGK 555
BLAST of mRNA_E_fasciculatus_S2_contig8284.16429.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YI92_HETAK) HSP 1 Score: 104 bits (259), Expect = 6.820e-23 Identity = 55/112 (49.11%), Postives = 72/112 (64.29%), Query Frame = 1
Query: 40 GSGGKKRRDILMFLRELFNMAKTLQVAPRDAFYRHLWDEVPLFEVFIPVLKDPAASVMERTACMEVLLASLTHDPALFRTHILKEGGHPLLPPTVNN--QAKSTSAAGGGGL 369
G+ + R DIL F RE+ M+KTLQ + RD FYR+L E F+VF+ VL D A++ R CMEVL+ASL HDP+L R +IL++GGHP LP + QA A GGG+
Sbjct: 310 GTSRQTRADILAFTREMVGMSKTLQPSVRDQFYRYLQSECLFFDVFVTVLADEEATIPARLCCMEVLVASLFHDPSLLRNYILQKGGHPPLPTNFGSASQAGRKDEAKGGGV 421
BLAST of mRNA_E_fasciculatus_S2_contig8284.16429.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNG3_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 2.290e-12 Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1
Query: 379 EGTRICRMALDTETMEGQPDRDTFLGVFYEHYVHWLVEPFWLGD 510
+ + R+ LDTE+M+GQ DRD FLG FY+HY+ WLVEPFW GD
Sbjct: 30 QAAEVLRLCLDTESMDGQADRDAFLGAFYDHYIQWLVEPFWQGD 73
BLAST of mRNA_E_fasciculatus_S2_contig8284.16429.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ATB7_9EUKA) HSP 1 Score: 75.1 bits (183), Expect = 2.490e-12 Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 1
Query: 64 DILMFLRELFNMAKTLQVAPRDAFYRHLWDEVPLFEVFIPVLKDPAASVMERTACMEVLLASLTHDPALFRTHILKEGGHPLLPPTVNNQAKSTSAAGGGGLGKGEGTRICRMALDTETMEGQPDRDTFLGVFYEHYVHWLVEP 495
D L L+E+ ++AK LQV R FYR + E F+ L PA + R +C++VLLA++ HDP+L R HIL++ + + S+AGG G K + + R LD E MEG+ ++D FL +FYE +V L P
Sbjct: 337 DALRLLQEVCSLAKQLQVYNRAGFYRK-FVEHRFFDPLERALTHPAPQL--RLSCLDVLLATVQHDPSLLRQHILQQRPKCGM---LYGLLHVVSSAGGSGE-KPQVAEVLRGLLDPEGMEGR-EQDDFLNLFYESFVAQLAAP 472
BLAST of mRNA_E_fasciculatus_S2_contig8284.16429.1 vs.
Match: SMK-1 (domain-containing protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507BWL4_9FUNG) HSP 1 Score: 71.6 bits (174), Expect = 4.190e-11 Identity = 57/178 (32.02%), Postives = 89/178 (50.00%), Query Frame = 1
Query: 1 VRDVFLLLNEPETGSGGKKRRDILMFLRELFNMAKTLQVAPRDAFYRHLWDEVPLFEVFIPVLKDPAASVMERTACMEVLLASLTHDPALFRTHIL---KEGGHPLLPPTVNNQAKSTSAAGGGGLGKGEGTRICRMALDT---ETMEG-------QPDRDTFLGVFYEHYVHWLVEP 495
+ +F +L+ + +K++D+++ L EL ++AKTLQVA R+ FYR L + LF +F L D S+ R A +L + L HDP L R+ L K PL+ + + + GL + + I R+ LDT +T +G D D FL +FYE V L++P
Sbjct: 733 LNQLFEMLSNEDVSM--EKKKDVILLLHELTSIAKTLQVASRNQFYRSLGNH-GLFAIFEYTLADTDMSI--RLAVTAILTSVLEHDPGLVRSFCLAQAKNNHRPLIDLIIERFLQEPDS----GL-RSQFAEIIRVLLDTTGLDTTDGIISHVGNDEDGDNFLKMFYEKQVLSLLDP 900
BLAST of mRNA_E_fasciculatus_S2_contig8284.16429.1 vs.
Match: SMK-1 (domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K0H8_GUITC) HSP 1 Score: 70.9 bits (172), Expect = 6.820e-11 Identity = 53/182 (29.12%), Postives = 84/182 (46.15%), Query Frame = 1
Query: 1 VRDVFLLLNEPETGSG--------GKKRRDILMFLRELFNMAKTLQVAPRDAFYRHLWDEVPLFEVFIPVLKDPAASVMERTACMEVLLASLTHDPALFRTHILKEGGHPLLPPTVNNQAKSTSAAGGGGLGKGEGTRICRMALDTETMEGQPDRDTFLGVFYEHYVHWLVEPFWLGDLSNE 522
+ ++F L P T +K+R+ +FLREL +AK LQ+ P+ AF+R + LF + + +++ +A +++L +L HDP L R++I E G LL + GL K + T I R D+ T +RD L FY H++ L+ PF D E
Sbjct: 310 LEELFELCRSPSTPKAEAKNGMNLSEKKRNGFLFLRELLEIAKPLQLPPQMAFFRSISSH-GLFSILQNGVNSEDNTIV--SASTDIMLCTLNHDPQLLRSYINSEEGDNLLKNLIQGLLFFQDV----GL-KAQITEILRCLFDSTTFGCPVERDGLLETFYLHHMDTLMSPFTSEDSFTE 483
BLAST of mRNA_E_fasciculatus_S2_contig8284.16429.1 vs.
Match: Hypothetical (protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PE20_GUITH) HSP 1 Score: 70.9 bits (172), Expect = 7.190e-11 Identity = 53/182 (29.12%), Postives = 84/182 (46.15%), Query Frame = 1
Query: 1 VRDVFLLLNEPETGSG--------GKKRRDILMFLRELFNMAKTLQVAPRDAFYRHLWDEVPLFEVFIPVLKDPAASVMERTACMEVLLASLTHDPALFRTHILKEGGHPLLPPTVNNQAKSTSAAGGGGLGKGEGTRICRMALDTETMEGQPDRDTFLGVFYEHYVHWLVEPFWLGDLSNE 522
+ ++F L P T +K+R+ +FLREL +AK LQ+ P+ AF+R + LF + + +++ +A +++L +L HDP L R++I E G LL + GL K + T I R D+ T +RD L FY H++ L+ PF D E
Sbjct: 330 LEELFELCRSPSTPKAEAKNGMNLSEKKRNGFLFLRELLEIAKPLQLPPQMAFFRSISSH-GLFSILQNGVNSEDNTIV--SASTDIMLCTLNHDPQLLRSYINSEEGDNLLKNLIQGLLFFQDV----GL-KAQITEILRCLFDSTTFGCPVERDGLLETFYLHHMDTLMSPFTSEDSFTE 503
BLAST of mRNA_E_fasciculatus_S2_contig8284.16429.1 vs.
Match: SMK-1 (domain-containing protein n=4 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C8T5_DIALT) HSP 1 Score: 67.0 bits (162), Expect = 1.620e-9 Identity = 55/168 (32.74%), Postives = 81/168 (48.21%), Query Frame = 1
Query: 34 ETGSGGKKRRDILMFLRELFNMAKTLQVAPRDAFYRHLWDEVPLFEVFIPVLKD-PAASVMERTACMEVLLASLTHDPALFRTHILKEGGHPLLPPTVNNQAKSTSAAGGGGLG-KGEGTRICRMALDTETMEGQPDRDTFLGVFYEHYVHWLVEPFWLGDLSNEGMG 531
E G+ ++RR++ L EL +A++LQ+ R AFYR + D +F PV +A M + E+L A+ HDP++ R IL E P +A G G K + + R LD ETMEG +++ FL +FYEH+V + P EG G
Sbjct: 354 EHGTPLERRRELSRLLLELCQLARSLQLFNRAAFYRRMLDH----GLFAPVASLLMSADPMLQLHAAEMLGATCLHDPSILRQFILVE-----RPAQRTMRALMHVLTCGAEAGVKAQLGEVLRALLDPETMEGL-EQEEFLNLFYEHFVAVALAPLESAGADGEGDG 511
BLAST of mRNA_E_fasciculatus_S2_contig8284.16429.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U7C8_HEMAN) HSP 1 Score: 62.4 bits (150), Expect = 2.150e-9 Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 1
Query: 61 RDILMFLRELFNMAKTLQVAPRDAFYRHLWDEVPLFEVFIPVLKDPAASVMERTACMEVLLASLTHDPALFRTHILKEGGHPLL 312
R+ +FLRELF ++K L + AFYR L + LF +F L A V R+AC ++LL +L HDP+L R ++LKE G LL
Sbjct: 5 RNGFLFLRELFEISKPLSPTQQMAFYRSLCSQ-GLFGIFQGGLSAEDAGV--RSACTDILLCTLNHDPSLLREYVLKESGGSLL 85 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8284.16429.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8284.16429.1 >prot_E_fasciculatus_S2_contig8284.16429.1 ID=prot_E_fasciculatus_S2_contig8284.16429.1|Name=mRNA_E_fasciculatus_S2_contig8284.16429.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=195bp VRDVFLLLNEPETGSGGKKRRDILMFLRELFNMAKTLQVAPRDAFYRHLWback to top mRNA from alignment at E_fasciculatus_S2_contig8284:2647..6820+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8284.16429.1 ID=mRNA_E_fasciculatus_S2_contig8284.16429.1|Name=mRNA_E_fasciculatus_S2_contig8284.16429.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4174bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8284:2647..6820+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8284:2647..6820+ >mRNA_E_fasciculatus_S2_contig8284.16429.1 ID=mRNA_E_fasciculatus_S2_contig8284.16429.1|Name=mRNA_E_fasciculatus_S2_contig8284.16429.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=585bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8284:2647..6820+ (Ectocarpus fasciculatus EfasUO2)back to top |