mRNA_E_fasciculatus_S2_contig8283.16428.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8283.16428.1 vs.
Match: FAD_binding_2 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J9Q8_9PHAE) HSP 1 Score: 277 bits (708), Expect = 1.710e-81 Identity = 147/165 (89.09%), Postives = 152/165 (92.12%), Query Frame = 2
Query: 674 KGLVRRASGAVEASEMMGHDDGGKAFMGTLEAYTAAANGERDDDFGKTVFPAKTFTADETLYIAIITPAIHYTMGGVRIDGEGRALGELAGDGGVASPIPGLFAAGEVTGGVHGANRLAGNSLLECVVIGRLAGQHAGGEAVASLSEGSDSGEDSAENNNSGDEL 1168
KGLVRRASGAVEASEMMGH DGGKA TLEAYTAAA+GER DDFGKTVFPAKTF+ADETLYIAIITPAIHYTMGGVRIDGEGRALGELAGDGGVASPIPGLFAAGEVTGGVHGANRLAGNSLLECVVIGRLAGQHAG EAVAS+SEGSDS AE N G+E+
Sbjct: 381 KGLVRRASGAVEASEMMGHSDGGKALKETLEAYTAAASGERTDDFGKTVFPAKTFSADETLYIAIITPAIHYTMGGVRIDGEGRALGELAGDGGVASPIPGLFAAGEVTGGVHGANRLAGNSLLECVVIGRLAGQHAGREAVASVSEGSDSXXXXAEKNKDGNEV 545
BLAST of mRNA_E_fasciculatus_S2_contig8283.16428.1 vs.
Match: NADH-dependent (fumarate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YME9_9STRA) HSP 1 Score: 142 bits (359), Expect = 2.160e-32 Identity = 80/144 (55.56%), Postives = 93/144 (64.58%), Query Frame = 2
Query: 671 GKGLVRRASGAVEASEMMGHDDGGKAFMGTLEAYTAAANGERDDDFGKTVFPAKTFTADETLYIAIITPAIHYTMGGVRIDGEGRALGELAGDGGVASPIPGLFAAGEVTGGVHGANRLAGNSLLECVVIGRLAGQHAGGEAVA 1102
GKGLV A A+ ++G D TL+ Y A+ D FGK FP K F+ DE L++AIITPAIHYTMGGV ID GR L A G PIP LFAAGEV+GGVHG NRLAGNSLLECVV+GR+AG+ A A+A
Sbjct: 411 GKGLVTEVEDAAAAAALIGTD--AATLAATLQQYARDAHAGAADAFGKVTFPVKDFSPDEPLFVAIITPAIHYTMGGVAIDAAGRVLRNAA-SGSAQEPIPRLFAAGEVSGGVHGGNRLAGNSLLECVVMGRVAGREAAAVALA 551
BLAST of mRNA_E_fasciculatus_S2_contig8283.16428.1 vs.
Match: FAD_binding_2 (domain-containing protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2HXG6_CAEJA) HSP 1 Score: 130 bits (328), Expect = 6.420e-32 Identity = 69/118 (58.47%), Postives = 80/118 (67.80%), Query Frame = 2
Query: 743 KAFMGTLEAYTAAANGERDDDFGKTVFPAKTFTADETLYIAIITPAIHYTMGGVRIDGEGRALGELAGDGGVASPIPGLFAAGEVTGGVHGANRLAGNSLLECVVIGRLAGQHAGGEA 1096
+ TLE Y NGE +D FGK VFP +A+E +Y AI+TPAIHYTMGG++ID + L E PIPGLFAAGEVTGGVHG+NRLAGNSLLECVV GR+AG G A
Sbjct: 28 EVIKSTLEDYEKLFNGEGEDTFGKKVFPVAAISANEPIYAAIVTPAIHYTMGGLKIDENAQVLDEQD------QPIPGLFAAGEVTGGVHGSNRLAGNSLLECVVFGRIAGVSGNGAA 139
BLAST of mRNA_E_fasciculatus_S2_contig8283.16428.1 vs.
Match: Cleavage (and polyadenylation specificity factor subunit 2 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QMR2_9CHLO) HSP 1 Score: 127 bits (318), Expect = 1.050e-29 Identity = 71/157 (45.22%), Postives = 94/157 (59.87%), Query Frame = 2
Query: 653 LSLVEAGKGLVRRASGAVEASEMMGHDDGGKAFMGTLEAYTAAANGERDDDFGKTVFPAKTFTADETLYIAIITPAIHYTMGGVRIDGEGRALGELAGDGGVASPIPGLFAAGEVTGGVHGANRLAGNSLLECVVIGRLAGQHAGGEAVASLSEGSD 1123
L+ + G+ + +G EA+ MG D TL+ Y AA+G+ D FGK VFP D +Y+ +TP IHYTMGG+ ID + LG+ PIP L AAGEVTGG+HGANRLAGNSL++C V GR++GQ A ++S+S GSD
Sbjct: 61 LAFYSSKAGIAQAVNGCTEAARHMGIDP--SVLKETLDEYARAASGQEPDKFGKKVFPHGPMNPDGQIYVMKVTPVIHYTMGGLAIDDRAQVLGKSG------EPIPKLLAAGEVTGGLHGANRLAGNSLMDCTVFGRISGQQAV-RIISSISSGSD 208
BLAST of mRNA_E_fasciculatus_S2_contig8283.16428.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN73_HETAK) HSP 1 Score: 122 bits (305), Expect = 8.590e-28 Identity = 70/134 (52.24%), Postives = 85/134 (63.43%), Query Frame = 2
Query: 674 KGLVRRASGAVEASEMMGHDDGGKAFMGTLEAYTAAANGERDDDFGKTVFPAKTFTADETLYIAIITPAIHYTMGGVRIDGEGRALGELAGDGGVASPIPGLFAAGEVTGGVHGANRLAGNSLLECVVIGRLAG 1075
KGLV G EA E G D LEAY+ A + D FG+TV+P ++ + ETLYIA++TP IHYTMGG++ID E + + + I GL+AAGEVTGGVHGANRL GNSLLECVV GR AG
Sbjct: 83 KGLVTPVKGVEEAKETFGFDTA--VLQEALEAYSEKAQNGQKDAFGRTVYPVQSISPLETLYIALVTPCIHYTMGGLKIDPETAQVVDHQNN-----RIKGLWAAGEVTGGVHGANRLGGNSLLECVVFGRRAG 209
BLAST of mRNA_E_fasciculatus_S2_contig8283.16428.1 vs.
Match: Fumarate (reductase n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SLH0_ALLM3) HSP 1 Score: 126 bits (316), Expect = 3.740e-27 Identity = 70/108 (64.81%), Postives = 84/108 (77.78%), Query Frame = 2
Query: 761 LEAYTAAANGERDDDFGKTVFPAKTFTADETLYIAIITPAIHYTMGGVRIDGEGRALGELAGDGGVASPIPGLFAAGEVTGGVHGANRLAGNSLLECVVIGRLAGQHA 1084
L AYTAAA GE+ D GKTVFPA+ F A +T +A +TPA+HYTMGGVRID + R + +GGV +PGL+AAGEV+GGVHGANRLAGNSLLECVV GR AG++A
Sbjct: 375 LGAYTAAAKGEKPDVLGKTVFPAE-FRATDTFAVACVTPAVHYTMGGVRIDKDARVVR----NGGV---VPGLYAAGEVSGGVHGANRLAGNSLLECVVFGRRAGKNA 474
BLAST of mRNA_E_fasciculatus_S2_contig8283.16428.1 vs.
Match: FAD_binding_2 (domain-containing protein n=1 Tax=Caenorhabditis elegans TaxID=6239 RepID=Q09567_CAEEL) HSP 1 Score: 125 bits (315), Expect = 5.040e-27 Identity = 73/155 (47.10%), Postives = 95/155 (61.29%), Query Frame = 2
Query: 650 FLSLVEAGKGLVRRASGAVEASEMMGHDDGGKAFMGTLEAYTAAANGERDDDFGKTVFPAKTFTADETLYIAIITPAIHYTMGGVRIDGEGRALGELAGDGGVASPIPGLFAAGEVTGGVHGANRLAGNSLLECVVIGRLAGQHAGGEAVASLSE 1114
F S+V K + + E ++ +G D+ A TLE Y + +G+ +D FGK VFP + E +Y AI+ PAIHYTMGG++ID R + E PI GLFAAGEVTGGVHG+NRLAGNSLLECVV GR+AG+ A A + +E
Sbjct: 349 FYSIV---KKFFAKYENSAELAKALGIDE--SAIKTTLEEYQKSFDGKSEDPFGKKVFPVSAISPTEPIYAAIVVPAIHYTMGGLKIDEATRVIDEHG------KPIVGLFAAGEVTGGVHGSNRLAGNSLLECVVFGRIAGKSAAQSAAETRTE 492
BLAST of mRNA_E_fasciculatus_S2_contig8283.16428.1 vs.
Match: Flavocytochrome (c n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A138ZYY7_GONPJ) HSP 1 Score: 126 bits (316), Expect = 1.320e-26 Identity = 76/143 (53.15%), Postives = 86/143 (60.14%), Query Frame = 2
Query: 668 AGKGLVRRASGAVEASEMMGHDDGGKAFMGTLEAYTAAANGERDDDFGKTVFPAKTFTADETLYIAIITPAIHYTMGGVRIDGEGRALGELAGDGGVASPIPGLFAAGEVTGGVHGANRLAGNSLLECVVIGRLAGQHAGGEA 1096
A +GL + +G E + MG + E Y A A G + D FGKT F A TF DE LY+A ITPAIHYTMGG ID + R L P+ GLFAAGEVTGGVHG NRLAGNSLLECVV GR AG+ A G A
Sbjct: 534 AKRGLFKHVTGVDELAAHMGV--AAEVLRQEFEEYIAVAEGRKQDPFGKTHF-ATTFRPDEPLYVAQITPAIHYTMGGALIDADARVLKPTG------EPVQGLFAAGEVTGGVHGGNRLAGNSLLECVVFGRRAGRGAAGGA 667
BLAST of mRNA_E_fasciculatus_S2_contig8283.16428.1 vs.
Match: Fumarate (reductase n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NHF3_RETFI) HSP 1 Score: 115 bits (289), Expect = 1.500e-26 Identity = 68/140 (48.57%), Postives = 90/140 (64.29%), Query Frame = 2
Query: 668 AGKGLVRRASGAVEASEMMGHDDGGKAFMGTLEAYTAAA-NGERDDDFGKTVFPAKTFTADETLYIAIITPAIHYTMGGVRIDGEGRALGELAGDGGVASPIPGLFAAGEVTGGVHGANRLAGNSLLECVVIGRLAGQHA 1084
A GLV++ + E +E G TL YT A +GERD+ FGKTV+P + +D+T+Y A+ITP IHYTMGG++I+ + + L + P+ GLF AGEVTGGVHG NRLAGNSLLECVV GR++ + A
Sbjct: 3 ASTGLVKKYANVDELAEDSGIS--ADVLRETLAKYTKVALSGERDE-FGKTVYPVSKWDSDQTIYSALITPVIHYTMGGLQINTKAQILDQSG------EPLHGLFGAGEVTGGVHGMNRLAGNSLLECVVYGRISAKSA 133
BLAST of mRNA_E_fasciculatus_S2_contig8283.16428.1 vs.
Match: FAD_binding_2 (domain-containing protein n=1 Tax=Angiostrongylus cantonensis TaxID=6313 RepID=A0A0K0D2N6_ANGCA) HSP 1 Score: 123 bits (308), Expect = 3.150e-26 Identity = 68/115 (59.13%), Postives = 77/115 (66.96%), Query Frame = 2
Query: 746 AFMGTLEAYTAAANGERDDDFGKTVFPAKTFTADETLYIAIITPAIHYTMGGVRIDGEGRALGELAGDGGVASPIPGLFAAGEVTGGVHGANRLAGNSLLECVVIGRLAGQHAGG 1090
A TL Y G+ D FGKTVFP +E +YIAIITPAIHYTMGG++ID + R E V+ P GL AAGEVTGGVHGANRLAGNSLLECVV GR+AG+ A G
Sbjct: 355 ALKSTLLEYNKYIKGDSGDSFGKTVFPVA-IDPNEPVYIAIITPAIHYTMGGLKIDKQARVYNEF-----VSKPFQGLLAAGEVTGGVHGANRLAGNSLLECVVFGRIAGRTAAG 463 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8283.16428.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig8283.16428.1 >prot_E_fasciculatus_S2_contig8283.16428.1 ID=prot_E_fasciculatus_S2_contig8283.16428.1|Name=mRNA_E_fasciculatus_S2_contig8283.16428.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=266bp MTLSLRRKHDRARDGDGWPWPKLSRTWEAASPCSTFAAHPHHPGPSQLRSback to top mRNA from alignment at E_fasciculatus_S2_contig8283:495..2902+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig8283.16428.1 ID=mRNA_E_fasciculatus_S2_contig8283.16428.1|Name=mRNA_E_fasciculatus_S2_contig8283.16428.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2408bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8283:495..2902+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8283:495..2902+ >mRNA_E_fasciculatus_S2_contig8283.16428.1 ID=mRNA_E_fasciculatus_S2_contig8283.16428.1|Name=mRNA_E_fasciculatus_S2_contig8283.16428.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=798bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8283:495..2902+ (Ectocarpus fasciculatus EfasUO2)back to top |