mRNA_E_fasciculatus_S2_contig8264.16412.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8264.16412.1
Unique NamemRNA_E_fasciculatus_S2_contig8264.16412.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8264.16412.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.150e-23
Identity = 52/88 (59.09%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 QFAPLSAFGCNLRSHFPATLFRFPLRTPEQASVSRLSRQAHGVKDMWGLLEAFAGESAGMLLFLKNVERMTVFEWESGQSQPRQVNFC 264
            QFAPL  F  N  S F  TLFRFPLRT EQA+ SRLSR  H V     LL  F  ES GMLLFLKNVER+ V EW  G+S+PR ++ C
Sbjct:  186 QFAPLRVFDNNFNSRFEGTLFRFPLRTAEQAAASRLSRTVHTVDGTRELLRQFVAESVGMLLFLKNVERLVVCEWVEGESEPRCLHEC 273
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BLAST of mRNA_E_fasciculatus_S2_contig8264.16412.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYE3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.790e-22
Identity = 47/82 (57.32%), Postives = 58/82 (70.73%), Query Frame = 1 
Query:    1 QFAPLSAFGCNLRSHFPATLFRFPLRTPEQASVSRLSRQAHGVKDMWGLLEAFAGESAGMLLFLKNVERMTVFEWESGQSQP 246
            QF PL AFG +LR+ F  T+FR+PLRT  QA  SRLSRQAH ++ M GLL     E+A MLLFLKNVER+ ++EW +G   P
Sbjct:  173 QFEPLRAFGADLRTPFDGTVFRYPLRTAAQARESRLSRQAHSLESMRGLLAQLGAEAASMLLFLKNVERIGIYEWRAGAQAP 254
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BLAST of mRNA_E_fasciculatus_S2_contig8264.16412.1 vs.
Match: sacsin-like (n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C3736)

HSP 1 Score: 92.4 bits (228), Expect = 3.610e-20
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 QFAPLSAFGCNLRSHFPATLFRFPLRTPEQASVSRLSRQAHGVKDMWGLLEAFAGESAGMLLFLKNVERMTVFEWESGQSQPRQVNFCDARTLCVGIR 294
            QF+P  AFGC++R  F  TLFRFPLR+ EQA+ S+LS+Q++   DM  LL     E   ++LFLKNVER+  +EW +G S P  +  C  R     IR
Sbjct:  162 QFSPYCAFGCDMRRPFGGTLFRFPLRSAEQAATSKLSKQSYTSTDMLELLRDLYHEIVQVMLFLKNVERVEFYEWSAGSSSPTLLYSCAVRLPTSEIR 259
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BLAST of mRNA_E_fasciculatus_S2_contig8264.16412.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5N2_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.470e-20
Identity = 47/82 (57.32%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:    1 QFAPLSAFGCNLRSHFPATLFRFPLRTPEQASVSRLSRQAHGVKDMWGLLEAFAGESAGMLLFLKNVERMTVFEWESGQSQP 246
            QFAPL AFG +LRS F  TLFR+PLRT +QA+ SRLSRQAH    M  LL     E+A MLLFLK+VE + V+EW     +P
Sbjct:  237 QFAPLRAFGADLRSEFQGTLFRYPLRTAQQAAESRLSRQAHDEDSMKALLVQMGREAASMLLFLKHVETVEVWEWSRDGLEP 318
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BLAST of mRNA_E_fasciculatus_S2_contig8264.16412.1 vs.
Match: RING-type (domain-containing protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S6M7_SELML)

HSP 1 Score: 92.4 bits (228), Expect = 9.510e-20
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 QFAPLSAFGCNLRSHFPATLFRFPLRTPEQASVSRLSRQAHGVKDMWGLLEAFAGESAGMLLFLKNVERMTVFEWESGQSQPRQVNFCDARTLCVGIR 294
            QF+P  AFGC++R  F  TLFRFPLR+ EQA+ S+LS+Q++   DM  LL     E   ++LFLKNVER+  +EW +G S P  +  C  R     IR
Sbjct:  162 QFSPYCAFGCDMRRPFGGTLFRFPLRSAEQAATSKLSKQSYTSTDMLELLRDLYHEIVQVMLFLKNVERVEFYEWSAGSSSPTLLYSCAVRLPTSEIR 259
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BLAST of mRNA_E_fasciculatus_S2_contig8264.16412.1 vs.
Match: Sacsin (n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R9G5_9POAL)

HSP 1 Score: 92.4 bits (228), Expect = 9.510e-20
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:    1 QFAPLSAFGCNLRSHFPATLFRFPLRTPEQASVSRLSRQAHGVKDMWGLLEAFAGESAGMLLFLKNVERMTVFEWESGQSQPRQVNFCDART 276
            QFAP  AFGC++++ F  TLFRFPLR  EQASVSRLSRQA+   D+  LL     E+   +LFLK+V  + ++ WE+G   P+++  C  R+
Sbjct:  173 QFAPYRAFGCDMKNGFSGTLFRFPLRNSEQASVSRLSRQAYSENDVLTLLSQLYEEAVFTMLFLKSVVSVEMYVWEAGTDAPKKLYSCSVRS 264
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BLAST of mRNA_E_fasciculatus_S2_contig8264.16412.1 vs.
Match: Uncharacterized (protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176VUF7_MARPO)

HSP 1 Score: 92.0 bits (227), Expect = 1.000e-19
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 1 
Query:    1 QFAPLSAFGCNLRSHFPATLFRFPLRTPEQASVSRLSRQAHGVKDMWGLLEAFAGESAGMLLFLKNVERMTVFEWESGQSQPRQVNFCDARTLCVGIR 294
            QFAP  AFGC++++ +  TLFRFPLR+ +QA  SRLSRQ++   DM  LL     E+   +LFLKN+E + +++W+ G S P +V  C  +++   IR
Sbjct:  126 QFAPYIAFGCDMQNPYDGTLFRFPLRSVQQAEDSRLSRQSYTEDDMSSLLYELYLEAVPAMLFLKNIEVIEIYDWQEGASDPSRVYSCQVQSVSAEIR 223
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BLAST of mRNA_E_fasciculatus_S2_contig8264.16412.1 vs.
Match: RING-type (domain-containing protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K3C6_PHYPA)

HSP 1 Score: 90.5 bits (223), Expect = 4.510e-19
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:    1 QFAPLSAFGCNLRSHFPATLFRFPLRTPEQASVSRLSRQAHGVKDMWGLLEAFAGESAGMLLFLKNVERMTVFEWESGQSQPRQVNFCDARTLCVGIR 294
            QF+P  AFGC++ S +P TLFRFPLR   QA+VS LSRQ++  +DM  LL+    E    +LFLK+VE + ++EW +   +P+Q+  C  ++    +R
Sbjct:  170 QFSPYCAFGCDMESPYPGTLFRFPLRNELQAAVSSLSRQSYSEEDMQNLLKDLFVEGVHSMLFLKSVEVLEIYEWHAEMPEPQQLYSCSIKSPTSELR 267
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BLAST of mRNA_E_fasciculatus_S2_contig8264.16412.1 vs.
Match: RING-type (domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9WB33_9ORYZ)

HSP 1 Score: 90.1 bits (222), Expect = 6.150e-19
Identity = 45/98 (45.92%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 QFAPLSAFGCNLRSHFPATLFRFPLRTPEQASVSRLSRQAHGVKDMWGLLEAFAGESAGMLLFLKNVERMTVFEWESGQSQPRQVNFCDARTLCVGIR 294
            Q +P  AFGC++++ F  TLFRFPLRT EQAS+SRLSRQ +   D+  L      E+   LLFLKNV  + ++ WESG S+P+ V  C   +    +R
Sbjct:  174 QLSPYCAFGCDMKAPFQGTLFRFPLRTAEQASLSRLSRQVYTEDDILSLFAQLYEEAVYNLLFLKNVLSLEMYVWESGTSEPKIVYSCSIGSHHANLR 271
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8264.16412.1 vs.
Match: RING-type (domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W2I1_MARPO)

HSP 1 Score: 90.1 bits (222), Expect = 6.160e-19
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:    1 QFAPLSAFGCNLRSHFPATLFRFPLRTPEQASVSRLSRQAHGVKDMWGLLEAFAGESAGMLLFLKNVERMTVFEWESGQSQPRQVNFCDARTLCVGIR 294
            QFAP  AFGC++++ +  TLFRFPLR+ +QA  SRLSRQ++   DM  LL     E+   +LFLKN+E + +++W+ G   P +V  C  +++   IR
Sbjct:  170 QFAPYIAFGCDMQNPYDGTLFRFPLRSVQQAEDSRLSRQSYTEDDMSSLLYELYLEAVPAMLFLKNIEVIEIYDWQEGAPDPSRVYSCQVQSVSAEIR 267
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8264.16412.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RING-type2.150e-2359.09domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical4.790e-2257.32protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
sacsin-like3.610e-2046.94n=2 Tax=Selaginella moellendorffii TaxID=88036 Rep... [more]
Hypothetical4.470e-2057.32protein (Fragment) n=1 Tax=Pinguiococcus pyrenoido... [more]
RING-type9.510e-2046.94domain-containing protein n=3 Tax=Selaginella moel... [more]
Sacsin9.510e-2047.83n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A83... [more]
Uncharacterized1.000e-1943.88protein n=1 Tax=Marchantia polymorpha subsp. ruder... [more]
RING-type4.510e-1942.86domain-containing protein n=3 Tax=Physcomitrium pa... [more]
RING-type6.150e-1945.92domain-containing protein n=1 Tax=Leersia perrieri... [more]
RING-type6.160e-1942.86domain-containing protein n=2 Tax=Marchantia polym... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8264contigE_fasciculatus_S2_contig8264:6476..6769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start0
Seed ortholog score92.0
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog88036.EFJ19830
Model size294
KEGG koko:K17592
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006457,GO:0008150,GO:0009987,GO:0030424,GO:0030425,GO:0030544,GO:0031072,GO:0036477,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051087,GO:0051128,GO:0051129,GO:0065007,GO:0070628,GO:0070852,GO:0090083,GO:0090084,GO:0097447,GO:0097458,GO:0120025,GO:0120038
Exons1
EggNOG free text desc.negative regulation of inclusion body assembly
EggNOG OGs28IDA@1,2QQPY@2759,37MBW@33090,3GEHS@35493
Cds size294
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842486.619651-CDS-E_fasciculatus_S2_contig8264:6475..67691696842486.619651-CDS-E_fasciculatus_S2_contig8264:6475..6769Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8264 6476..6769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8264.16412.1prot_E_fasciculatus_S2_contig8264.16412.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8264 6476..6769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8264.16412.1

>prot_E_fasciculatus_S2_contig8264.16412.1 ID=prot_E_fasciculatus_S2_contig8264.16412.1|Name=mRNA_E_fasciculatus_S2_contig8264.16412.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=98bp
QFAPLSAFGCNLRSHFPATLFRFPLRTPEQASVSRLSRQAHGVKDMWGLL
EAFAGESAGMLLFLKNVERMTVFEWESGQSQPRQVNFCDARTLCVGIR
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mRNA from alignment at E_fasciculatus_S2_contig8264:6476..6769-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8264.16412.1 ID=mRNA_E_fasciculatus_S2_contig8264.16412.1|Name=mRNA_E_fasciculatus_S2_contig8264.16412.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=294bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8264:6476..6769- (Ectocarpus fasciculatus EfasUO2)
CAGTTTGCTCCGCTGAGCGCGTTCGGCTGCAACCTGCGATCCCACTTCCC
GGCCACGCTCTTCCGGTTCCCGCTGAGGACACCGGAGCAAGCGTCGGTGT
CTCGGCTCAGCAGGCAGGCCCACGGGGTGAAGGACATGTGGGGGCTGCTG
GAAGCGTTCGCGGGCGAGTCGGCCGGGATGCTGCTGTTCCTCAAGAACGT
CGAACGCATGACCGTGTTCGAGTGGGAGTCCGGGCAGAGCCAGCCACGGC
AGGTGAATTTTTGCGATGCGCGCACGCTTTGTGTTGGCATCCGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8264:6476..6769-

>mRNA_E_fasciculatus_S2_contig8264.16412.1 ID=mRNA_E_fasciculatus_S2_contig8264.16412.1|Name=mRNA_E_fasciculatus_S2_contig8264.16412.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=294bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8264:6476..6769- (Ectocarpus fasciculatus EfasUO2)
CAGTTTGCTCCGCTGAGCGCGTTCGGCTGCAACCTGCGATCCCACTTCCC
GGCCACGCTCTTCCGGTTCCCGCTGAGGACACCGGAGCAAGCGTCGGTGT
CTCGGCTCAGCAGGCAGGCCCACGGGGTGAAGGACATGTGGGGGCTGCTG
GAAGCGTTCGCGGGCGAGTCGGCCGGGATGCTGCTGTTCCTCAAGAACGT
CGAACGCATGACCGTGTTCGAGTGGGAGTCCGGGCAGAGCCAGCCACGGC
AGGTGAATTTTTGCGATGCGCGCACGCTTTGTGTTGGCATCCGT
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