mRNA_E_fasciculatus_S2_contig8261.16409.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8261.16409.1
Unique NamemRNA_E_fasciculatus_S2_contig8261.16409.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8261.16409.1 vs.
Match: Serine--tRNA (ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT02_ECTSI)

HSP 1 Score: 355 bits (910), Expect = 1.340e-116
Identity = 181/189 (95.77%), Postives = 189/189 (100.00%), Query Frame = 1 
Query:    1 MPLDINMFRREPDLIRESQRRRFEPVEIVDEVIDLDTKWRESRSRIDFLNKDKNRFQKEVTKAKKAGGEDPENAAKIKEVAKEVKVVEAKMVELSQKVSKLLPKIGNIVADDVPVSDDEDKDNKVVSTFGPTPTGEKFMHHHEVLHRIGGYEPERGVGVAGHRAYFLRDAGLLLNQALINYGIAFLRKR 567
            MPLDINMFRREPDLIRESQRRRF+PVEIVDEVIDLDTKWRESRSRIDFLNKD+NR+QKEVTKAKKAGGEDPENAAKIKEVAKEVK+VEAKMVELSQ+VSKLLPKIGNIVADDVPVS+DE+KDNKVVSTFGPTPTGEK+MHHHEVLHRIGGYEPERGVGVAGHRAYFLRDAGLLLNQALINYGIAFLRKR
Sbjct:    1 MPLDINMFRREPDLIRESQRRRFQPVEIVDEVIDLDTKWRESRSRIDFLNKDRNRYQKEVTKAKKAGGEDPENAAKIKEVAKEVKIVEAKMVELSQQVSKLLPKIGNIVADDVPVSNDEEKDNKVVSTFGPTPTGEKYMHHHEVLHRIGGYEPERGVGVAGHRAYFLRDAGLLLNQALINYGIAFLRKR 189
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8261.16409.1 vs.
Match: Serine--tRNA (ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY7_9STRA)

HSP 1 Score: 223 bits (568), Expect = 2.590e-65
Identity = 114/193 (59.07%), Postives = 148/193 (76.68%), Query Frame = 1 
Query:    1 MPLDINMFRRE----PDLIRESQRRRFEPVEIVDEVIDLDTKWRESRSRIDFLNKDKNRFQKEVTKAKKAGGEDPENAAKIKEVAKEVKVVEAKMVELSQKVSKLLPKIGNIVADDVPVSDDEDKDNKVVSTFGPTPTGEKFMHHHEVLHRIGGYEPERGVGVAGHRAYFLRDAGLLLNQALINYGIAFLRKR 567
            MP+DI  FR +    P+L+RESQRRRF  V +VDE+I +D+ WR  R ++D L K++NR QK+V  ++K G  D E  A+IK + +E+K  EA++  L ++ ++LLPKIGNIVA DVP S+DE+KDN+V    GP PTGE++ HHHEVL+RIGGYEPERGV VAGHRAYFLRDAGLLLNQALI +G+AFL +R
Sbjct:    1 MPVDIRQFRTDQGGDPELVRESQRRRFADVNLVDEIIRVDSAWRAGRGKLDLLGKERNRVQKQVGVSRKGGKPDVEGEARIKAIGEEIKAKEAELDALEKECARLLPKIGNIVAPDVPTSNDEEKDNEVTVEHGPKPTGEQYSHHHEVLYRIGGYEPERGVQVAGHRAYFLRDAGLLLNQALIQFGLAFLVQR 193
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8261.16409.1 vs.
Match: Serine--tRNA (ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLN9_9STRA)

HSP 1 Score: 187 bits (476), Expect = 2.470e-52
Identity = 104/193 (53.89%), Postives = 133/193 (68.91%), Query Frame = 1 
Query:    1 MPLDINMFR----REPDLIRESQRRRFEPVEIVDEVIDLDTKWRESRSRIDFLNKDKNRFQKEVTKAKKAGGEDPENAAKIKEVAKEVKVVEAKMVELSQKVSKLLPKIGNIVADDVPVSDDEDKDNKVVSTFGPTPTGEKFMHHHEVLHRIGGYEPERGVGVAGHRAYFLRDAGLLLNQALINYGIAFLRKR 567
            MP+DIN+ R     +P L+RESQRRRF  VE+VDEV+  D  WR+  +  D   K +N  Q EV+K  KA  E  +  AKI+E  K+V  ++  +    ++V KLLPKIGNIV D VPVS DE+ D +VV T+G   TG+  +HHH++L RIGG+EPERG  VAGHR YFLRDAGLLLN AL+NYG++FLR R
Sbjct:    1 MPIDINLLRVDRGGDPALVRESQRRRFASVELVDEVLARDASWRKLVNDSDATRKARNAVQAEVSKKMKAKEECRDLVAKIQEFDKQVLEMDRAVKAAKEEVDKLLPKIGNIVDDSVPVSQDEEADTEVVRTWGTPVTGDDLLHHHDLLWRIGGFEPERGSAVAGHRGYFLRDAGLLLNMALVNYGVSFLRAR 193
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8261.16409.1 vs.
Match: Serine--tRNA (ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDB3_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.490e-51
Identity = 106/193 (54.92%), Postives = 127/193 (65.80%), Query Frame = 1 
Query:    1 MPLDINMFRRE----PDLIRESQRRRFEPVEIVDEVIDLDTKWRESRSRIDFLNKDKNRFQKEVTKAKKAGGEDPENAAKIKEVAKEVKVVEAKMVELSQKVSKLLPKIGNIVADDVPVSDDEDKDNKVVSTFGPTPTGEKFMHHHEVLHRIGGYEPERGVGVAGHRAYFLRDAGLLLNQALINYGIAFLRKR 567
            MPLDIN+FR      P+LIRESQRRRF  VE+VDEVI  D KWR     ID L K +N  QKEV    KA        A+IK + +E+   EA+   L  +V +L+  IGN+V   VPVS DEDKDN VV  +G        ++HH++L RIGGYEPERG  +AGHR YFL+DAG+LLNQA INYGIAFLRKR
Sbjct:    1 MPLDINLFRANAGGNPELIRESQRRRFASVEVVDEVIAKDEKWRILTGTIDDLRKKRNAVQKEVAVKMKAKEAADAQVAEIKAIGEEILAAEAEQKALKIEVDRLVGTIGNLVESGVPVSQDEDKDNLVVRKWGVPRDPAGMLNHHDLLWRIGGYEPERGAQIAGHRGYFLKDAGVLLNQAFINYGIAFLRKR 193
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8261.16409.1 vs.
Match: Serine--tRNA (ligase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3J7_AURAN)

HSP 1 Score: 172 bits (437), Expect = 1.230e-48
Identity = 103/195 (52.82%), Postives = 134/195 (68.72%), Query Frame = 1 
Query:    1 MPLDINMFRR----EPDLIRESQRRRFEPVEIVDEVIDLDTKWRESRSRIDFLNKDKNRFQKEVTKAKKAGGEDP-ENAAKIKEVAKEVKVVEAKMVELSQKVSKLLPKIGNIVADDVPVSDDEDKDNKVVSTFGP-TPTGEKFMHHHEVLHRIGGYEPERGVGVAGHRAYFLRDAGLLLNQALINYGIAFLRKR 567
            MPLDI++ R     +P+ +RESQRRRF  V +VD+VI  D  WR+    +D +  +KN+ QKE+T  KKA  + P +  A +K +  +   VEA++   +QKV KL   IGN+VADDV VS DE+KDN+VVS +G   PT      HHE+L+ IGGYEPERGV VAGHRAYF  D G++LNQA+INYGI+FLRKR
Sbjct:    1 MPLDISILRAYRGGDPEKVRESQRRRFADVGLVDKVIAEDEAWRKLTQDVDDIKAEKNKKQKEITTLKKAKADVPAQMLADLKALDAKRAAVEARVEPQAQKVKKLFSGIGNLVADDVVVSQDEEKDNEVVSRWGECAPTA--AHSHHELLYMIGGYEPERGVRVAGHRAYFFTDVGVMLNQAVINYGISFLRKR 193
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8261.16409.1 vs.
Match: Serine--tRNA (ligase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZR42_9STRA)

HSP 1 Score: 173 bits (439), Expect = 2.160e-47
Identity = 105/194 (54.12%), Postives = 129/194 (66.49%), Query Frame = 1 
Query:    1 MPLDINMFRR----EPDLIRESQRRRFEPVEIVDEVIDLDTKWRESRSRIDFLNKDKNRFQKEVTKAKKAGGE-DPENAAKIKEVAKEVKVVEAKMVELSQKVSKLLPKIGNIVADDVPVSDDEDKDNKVVSTFGPTPTGEKFMHHHEVLHRIGGYEPERGVGVAGHRAYFLRDAGLLLNQALINYGIAFLRKR 567
            MPLDIN  R     +P+ +RESQRRRF  V +VD+VI  D +WR   +  D    +KN  QKE+T  KKA  E DP+    +K +  +VK  EA      QKV KL   IGN+V D VPVS+DEDKDN+VV+ +G      K+ HH E+L+ IGGYEPERGV VAGHRAYF  D G+LLNQA+INYGIAFLRK+
Sbjct:   60 MPLDINTIRAYKGGDPEKVRESQRRRFADVALVDKVIAEDEEWRRLVALADDKRGEKNAKQKEITALKKAKKEVDPQMLKDLKALDAKVKEAEAATEPQLQKVLKLFNTIGNLVEDSVPVSNDEDKDNEVVNKWGTCKQDAKYSHH-ELLYMIGGYEPERGVRVAGHRAYFFTDYGVLLNQAVINYGIAFLRKK 252
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8261.16409.1 vs.
Match: Serine--tRNA (ligase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3E5_HETAK)

HSP 1 Score: 169 bits (428), Expect = 8.370e-47
Identity = 100/194 (51.55%), Postives = 129/194 (66.49%), Query Frame = 1 
Query:    1 MPLDINMFR----REPDLIRESQRRRFEPVEIVDEVIDLDTKWRESRSRIDFLNKDKNRFQKEVTKAKKAGGEDPENAAKIKE-VAKEVKVVEAKMVELSQKVSKLLPKIGNIVADDVPVSDDEDKDNKVVSTFGPTPTGEKFMHHHEVLHRIGGYEPERGVGVAGHRAYFLRDAGLLLNQALINYGIAFLRKR 567
            M +DIN  R     +P+ ++E QR+RF  VEIVDE ++ D  WR   S ID L K+KN  QKE+ K  KA  + P    + K  V  E+   EA+ ++L   V KLL +IGN+V DDVPVS DE  +N  V T GPTP+G ++ +HH +LH+IGGYEPERG  VAG+R YFLRDAG+ LNQALINYG+ F R+R
Sbjct:    1 MGIDINNLRVDRGGDPEKVKEWQRKRFAKVEIVDECVEKDNLWRTVVSTIDNLKKEKNAVQKEIGKHMKAKEQPPPELLERKAAVEAEILQKEAEKIDLEAVVQKLLNQIGNMVDDDVPVSQDE-AENGTVRTHGPTPSGPQYNNHHNLLHKIGGYEPERGSKVAGNRCYFLRDAGVRLNQALINYGMDFCRER 193
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8261.16409.1 vs.
Match: Serine--tRNA (ligase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1X7_9STRA)

HSP 1 Score: 161 bits (408), Expect = 4.090e-44
Identity = 92/180 (51.11%), Postives = 118/180 (65.56%), Query Frame = 1 
Query:   31 EPDLIRESQRRRFEPVEIVDEVIDLDTKWRESRSRIDFLNKDKNRFQKEVTKAKKAGGEDPENAAKIKEVAKEVKVVEAKMVELSQKVSKLLPKIGNIVADDVPVSDDEDKDNKVVSTFGPTPTGEKF-MHHHEVLHRIGGYEPERGVGVAGHRAYFLRDAGLLLNQALINYGIAFLRKR 567
            +P+ ++E QR+R+  VE+VDEV++ D  WR+    +D L K +N  QKEV K KKA     +  A+IK   +E+K                    GN+V + VPVS DE++ N  V T GPTP+ +K+ +HHHE L RIGGYEPERGVGVAGHRAYFLRDAG+LLNQALINYG+ FLR R
Sbjct:    9 DPEKVKEFQRKRYAKVEVVDEVVEKDQAWRDLVKTVDELGKRRNAVQKEVGKKKKAKEPCDDLVAQIKGFDEEIKXXXXXXXXXXXXXXXXXXXXGNMVDESVPVSQDEEE-NITVCTVGPTPSNDKYPLHHHEALWRIGGYEPERGVGVAGHRAYFLRDAGVLLNQALINYGMQFLRAR 187
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8261.16409.1 vs.
Match: Serine--tRNA (ligase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3G3_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.370e-43
Identity = 97/201 (48.26%), Postives = 128/201 (63.68%), Query Frame = 1 
Query:    1 MPLDINMFRRE-----PDLIRESQRRRFEPVEIVDEVIDLDTKWRESRSRIDFLNKDKNRFQKEVTKAKKAGGEDPENAAKIKE-VAKEVKVVEAKMVELSQKVSKLLPKIGNIVADDVPVSDDEDKDNKVVSTFGPTPTGE------KFMHHHEVLHRIGGYEPERGVGVAGHRAYFLRDAGLLLNQALINYGIAFLRKR 567
            MPLDIN+FR +     PD IRESQRRR+   E+VD+VI+ D  WR ++  +D   KDK   QKE+TK  KA  +  E     KE + ++V  +E  +  L++   KLL ++GNIVA+DVP S+DED DN     + P P G+      K + HH++L+ IGGYEP RG  VAGH+ YFL DAG+LLNQA+INY IA  R R
Sbjct:    1 MPLDINLFRADRPGGDPDKIRESQRRRYASEELVDQVIEADNAWRAAQGAVDSRRKDKGDLQKELTKIYKAKQKPSEEMMAQKEAIDRDVAELEKAVAPLAEVRDKLLAQVGNIVAEDVPTSNDEDADNDAFIHW-PAPPGQGWTPPSKPIPHHQLLYMIGGYEPSRGAKVAGHKGYFLSDAGVLLNQAIINYAIALARAR 200
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8261.16409.1 vs.
Match: Serine--tRNA (ligase n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LP31_9STRA)

HSP 1 Score: 158 bits (399), Expect = 5.630e-43
Identity = 85/189 (44.97%), Postives = 123/189 (65.08%), Query Frame = 1 
Query:    1 MPLDINMFRREPDLIRESQRRRFEPVEIVDEVIDLDTKWRESRSRIDFLNKDKNRFQKEVTKAKKAGGEDPENAAKIKEVAKEVKVVEAKMVELSQKVSKLLPKIGNIVADDVPVSDDEDKDNKVVSTFGPTPTGEKFMHHHEVLHRIGGYEPERGVGVAGHRAYFLRDAGLLLNQALINYGIAFLRKR 567
            MP+DI++ +  PD++RES+++R+    +VD V+     W E + ++D + K+KN   KE+ K KKA        AK K + + +KV+EA +      +     KIGNIV + VPVSDDE  +N+V+ST+G    G+++  HH++L RI GYEPERGV VAGHR YFL+  G++LNQALINY + FL KR
Sbjct:    1 MPIDISILKDTPDVVRESEQKRYGEAGLVDRVVAKYAFWVEQKGKLDSMRKEKNDINKEIGKKKKAKENADAEVAKSKAMTEAIKVIEAVVATAEVDMKNEFNKIGNIVHESVPVSDDE-ANNEVISTWGEFKEGDQYQSHHQLLWRIDGYEPERGVKVAGHRGYFLKGPGVMLNQALINYALQFLIKR 188
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8261.16409.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Serine--tRNA1.340e-11695.77ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT02_... [more]
Serine--tRNA2.590e-6559.07ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
Serine--tRNA2.470e-5253.89ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=... [more]
Serine--tRNA1.490e-5154.92ligase n=1 Tax=Spumella elongata TaxID=89044 RepID... [more]
Serine--tRNA1.230e-4852.82ligase (Fragment) n=1 Tax=Aureococcus anophageffer... [more]
Serine--tRNA2.160e-4754.12ligase n=2 Tax=Pelagomonas calceolata TaxID=35677 ... [more]
Serine--tRNA8.370e-4751.55ligase (Fragment) n=1 Tax=Heterosigma akashiwo Tax... [more]
Serine--tRNA4.090e-4451.11ligase (Fragment) n=1 Tax=Fibrocapsa japonica TaxI... [more]
Serine--tRNA2.370e-4348.26ligase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=17... [more]
Serine--tRNA5.630e-4344.97ligase n=1 Tax=Aplanochytrium stocchinoi TaxID=215... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8261contigE_fasciculatus_S2_contig8261:247..4165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score357.5
Seed ortholog evalue4e-96
Seed eggNOG ortholog2880.D7FT02
Preferred nameEPRS
Model size570
KEGG rclassRC00055,RC00523
KEGG koko:K01875,ko:K01885,ko:K14163
KEGG ReactionR03661,R03662,R05578,R08218
KEGG Pathwayko00860,ko00970,ko01100,ko01110,ko01120,map00860,map00970,map01100,map01110,map01120
KEGG ModuleM00121,M00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000166,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001525,GO:0001568,GO:0001569,GO:0001763,GO:0001817,GO:0001818,GO:0001944,GO:0002009,GO:0002181,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003729,GO:0003824,GO:0004812,GO:0004818,GO:0004819,GO:0004827,GO:0004828,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006412,GO:0006417,GO:0006418,GO:0006424,GO:0006425,GO:0006433,GO:0006434,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006950,GO:0006952,GO:0006955,GO:0007275,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009069,GO:0009653,GO:0009719,GO:0009725,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010574,GO:0010605,GO:0010608,GO:0010629,GO:0010876,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0016020,GO:0016043,GO:0016070,GO:0016259,GO:0016525,GO:0016874,GO:0016875,GO:0017076,GO:0017101,GO:0017102,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0022603,GO:0022607,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0034097,GO:0034248,GO:0034249,GO:0034341,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0035239,GO:0035295,GO:0035613,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0042221,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043434,GO:0043436,GO:0043565,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044539,GO:0045087,GO:0045765,GO:0045892,GO:0045934,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0046942,GO:0046983,GO:0048514,GO:0048519,GO:0048523,GO:0048646,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051093,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0060429,GO:0060562,GO:0061138,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071345,GO:0071346,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0072358,GO:0072359,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097452,GO:0098619,GO:0140098,GO:0140101,GO:1901265,GO:1901342,GO:1901343,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902679,GO:1903506,GO:1903507,GO:1903670,GO:1903671,GO:1904046,GO:1990837,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000181,GO:2001141
Exons4
EggNOG free text desc.glutamyl-tRNA aminoacylation
EggNOG OGsCOG0008@1,COG0172@1,KOG1147@2759,KOG2509@2759
EC6.1.1.11,6.1.1.15,6.1.1.17
Cds size570
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko02048,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842486.306694-CDS-E_fasciculatus_S2_contig8261:246..3871696842486.306694-CDS-E_fasciculatus_S2_contig8261:246..387Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8261 247..387 -
1696842486.323256-CDS-E_fasciculatus_S2_contig8261:852..10071696842486.323256-CDS-E_fasciculatus_S2_contig8261:852..1007Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8261 853..1007 -
1696842486.3351793-CDS-E_fasciculatus_S2_contig8261:1561..17421696842486.3351793-CDS-E_fasciculatus_S2_contig8261:1561..1742Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8261 1562..1742 -
1696842486.346592-CDS-E_fasciculatus_S2_contig8261:4072..41651696842486.346592-CDS-E_fasciculatus_S2_contig8261:4072..4165Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8261 4073..4165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8261.16409.1prot_E_fasciculatus_S2_contig8261.16409.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8261 247..4165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8261.16409.1

>prot_E_fasciculatus_S2_contig8261.16409.1 ID=prot_E_fasciculatus_S2_contig8261.16409.1|Name=mRNA_E_fasciculatus_S2_contig8261.16409.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=190bp
MPLDINMFRREPDLIRESQRRRFEPVEIVDEVIDLDTKWRESRSRIDFLN
KDKNRFQKEVTKAKKAGGEDPENAAKIKEVAKEVKVVEAKMVELSQKVSK
LLPKIGNIVADDVPVSDDEDKDNKVVSTFGPTPTGEKFMHHHEVLHRIGG
YEPERGVGVAGHRAYFLRDAGLLLNQALINYGIAFLRKR*
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mRNA from alignment at E_fasciculatus_S2_contig8261:247..4165-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8261.16409.1 ID=mRNA_E_fasciculatus_S2_contig8261.16409.1|Name=mRNA_E_fasciculatus_S2_contig8261.16409.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3919bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8261:247..4165- (Ectocarpus fasciculatus EfasUO2)
ATGCCTCTCGATATCAACATGTTTCGGCGAGAGCCCGACCTGATTCGGGA
ATCGCAGAGGAGGCGATTTGAGCCTGTGGAAATTGTGGACGAGGTGAGGT
CCAGCAGGAAGAGCTCGCTTGGCTGTGGTTGGACGTCGCTCTCCATGTGG
TCTGTGTTGCTGGCTCTCGTGTCTCACCACGTGCATCTTGCAACAACACG
TATATTGCCTGTACCTCTGGGCCTTTCGAATGCCAAAGCCTTCGAAGTAC
ATTCCGTTCCCCTAGGCCTGTTGTGCGGATGCCACACACCCAAGGCGCAG
CATACAAATACTGCATACCAGTGCACCCGCTCCATGATAAGCTTTGGTAT
GAAGAATATCTACAATACCTGATTGAGACAAGAGCTAGCAAACATGGCGG
TGGAATGTTAGGCATGGAACCTACTACGAGTGAGGGACTCCCTCATGTAT
GTGTGTTACTGCTGTAGGTATGTTGAAATTCATCCTTGGACCAGCTGGAG
CGCCGTGCATACAAGTAGAGGTTGAGCCTGCTCTTCGCTTGGTGATGAGC
CTGCATGCAGTATGTATATAGTTGCCAGTGCTTCAGTTCTGCAAACGATG
ACCCTCTGTCATTCGTGGTATGAGTGCATTCCTGGGCTTGCCCCTCCCCT
GTAGCTCAATCTCCCAACCGTTTTTAAAGTATCGCCATACGGCAGGTGAC
ATAAGATACCACCCCCCCCCCCCCCCCCCCCCCCCCGTCTTCAAAAAACA
TAATCCCCACCCACCGCACGGCGGGAAGGCGTAGAGAAAAAATGTTCTTT
TGTTTTGCTTATTCTTTTNNNNNNNNNNCCCAATCCCCCAATCCTTTAAA
AGAACCGCCATAACGAAGGTAACAAAAGAAACCCCCCCCCCCCCCCCCCC
CCGGGACCGACTTTCAAAGCGCGATTGCTCCGCACGACGCAGAGAGGATT
CGTAGTGAAACAATTCGTTTTCGTTGCTGCCACTCTCTGTGCTGTGGAGG
AATCGATCGGGCTTTCCTTCGGGTGTGATACGTGTAGAATACTTACTCCC
CGCCCCCGTATGGCTACGGACACCAACAGCAGTTTGAGAGCACAGCCTAA
CAGGCACACGCGAGCAAGTACATTTGCGCGCGCAAGTGTGTGCTCAACGA
CACGTGCCCTCCAACTGCTGTTGCTGTCTTTTAGCCAGACGGGGGTTGCT
TTGCTCCTAGCCTCTCTCCTCGCCAAGACTGAACGCCGCTTTTCTATTAT
GTTCTATTCAAGAGCCCTTGTCGTCGATTCTACTGAGAATGAGAATGACG
TATGGCTCTATTAGTACAGATCATACGGACAGAGGCGGGGCAAAGAAATC
GGAGCGGTTTTTAATGTGACGACAACAACACAGAGCTTCCCTGTTGTGTT
AACACCTCCATCCCAGCACGACGTTTTTTGGAAGGTTAGCGGCAGGCCTC
CCTCCCTTGGAAGCAACATGGTGCTTACCATACGAGACTCCCACACATCT
CGTGAAGCATTCCAGGCTCTGGGTGCTTGTCAGAGGGAATGTATGCATAT
GTATGGAAGATGGAAGTCGTGACAGCAGTGAGAATTAAGAAAACCCCGCT
GGATACACGGTCTTATTTGAACATGTACGTGATCAGTGACCACGCTCGTA
AGTATCGTATGCATATGTGGCGGGTGTCAATCGACCCTAAACTTGATTCT
GGTATGTAAAGAGCGCTCCAGGATTCAGCCTTTTGAGACGGAGTTGGGAC
AGGCTCTAGCTTGCGTAGCAAAGGAAACAGCGGCGTTGTACGCGCGCACG
ATGCATGAGACGTGTGTGGCCCCGACAAGCTGTTGCTGGCGATGCTGGCA
ATCATCCCGCAAGCCTACCGCCGCTCTGCGTAGCCCGCCTTTTGTTCCTT
AGGAATTTGGCACTCTGACTCTATTTCTTGGTCTCGAAACAACAAAACAA
CCAGTAATACCCTCACGAATTTGAAACCTTTTGAAACCATACTGCCTTGC
AATCCCATGGTAAATGCAGAAAACATGGCAGTAGTGCTTTGCAATTCCAT
GGTAAATGCAGAAAACATGGCAGCAGTGCCTTGCAATTCCATGGTAAATG
CAGAAAACATGGCAGTAGTTTTGGAACAAACACGCTCCGAGGTATTATAG
TAGTGTATCGTGAACATCGTCGTAAATCTGATACACCGTCAAAGAGCGTT
AACATTTGAGAGACCGCCTGTTACCCACAGGGGAGATATCGCTGTATGAC
GCTCGGGAAAGGTAAAAATACAGAAGCCTCCGCTGACGCTATGAATGCAT
TGCTAACCTATGTTAAAGTCTTTCTGTAAATGCAGGTGGATTCGTTGTGT
TCTGTCAAGAAAAAAATATATATAAGACCGCTGCATCAACAACCTCGTGT
GTTTTCCTGGGATCTTCGTATAGGTGATCGACCTGGACACGAAATGGAGG
GAAAGCCGGTCTCGCATCGACTTCCTCAACAAGGACAAGAACCGCTTCCA
GAAGGAAGTGACCAAGGCCAAGAAGGCCGGGGGGGAGGACCCCGAAAATG
CGGCGAAGATCAAGGAGGTCGCCAAGGAGGTCAAGGTCGTCGAAGCGAAG
ATGGGTGAGTGCTGTTGTACTGCCTGCGGTCGTGTGGACGCATTTCTATT
CTTGTTTTGGCCCTCGAGTTTGTTGCGTTTGCCAGGCTCCAAGATGTGTT
TTTTTGTTGTGGTGTCGGGGGACAGTGGTTCGCATGAAACGAACGGGCCT
GCCAGCACCTTGCTTCCGTTTGGTTCGCTTTTGGCGGATGCGGCCTAGAA
TAACGTCGAAGGTCCTGTGCACAGCGGGCTACATGCGGAGTTGGAGACTT
AAACCAGATCTAGAATCTTTACGACTACTGCTGTCATGTCGTTTGTGGTT
TCTGTTTGAGTTGGCCCTTCTAGAAGCAGCCGTCCGTATCGAAACATTGG
TGGCTTTGTTTCAAGAGCGATTCAACCATATTCGCAAAGTGTATAATGTC
TTGTTGTCTCCCCTCCCCTCCTTTGTTGTCGCTTTTTTCAGTTGAGCTAA
GCCAGCAGGTGTCCAAGCTTTTGCCCCAAGATCGAAAACGATTCGACAAT
GTCCGTAAATGCATTCTTATCTTCCCTCCCTTGCCCCCCCTGTCATCGCC
TTCTTCAGTTGAGCTGAGCCAGAAGGTGTCGAAGCTTTTGCCCAAGATCG
GGAACATCGTGGCCGACGACGTGCCGGTGTCTGATGACGAGGACAAGGAC
AACAAGGTGGTCAGCACCTTCGGGCCTACGCCTACGGGGGAGAAGTTCAT
GCACCACCACGAGGTGTGTATGTACAGCAGTACTGCTCTGCAGATAGCGC
CCAATACTAAGCACTTGGAACTTCATCCTCAACAACGTATCAAAGATGAA
AACTTGAGCACCAGTTGTGTGCCCGGTTAACGTACACTAAAACCTATACA
AATACATCAATAATGAAATCTAAGAACAAGAGCCCCGGCCAAGTAGCTGA
CGTTACCTGTATGAAAAAACAAAAATCTTCCACATGTGAACGACCTATTG
ACGATGTGTTTTCCGCCCGCATGAGGCGACGATGAGTCGACACGCGTGAT
GTTCGTGTCAATACCGTCCGCATGAACGGCGACGATATGAGTACTCTGCA
ACTAGATTCCTAACTATTTCCAACCTTTTCCCGAAGACGTTCTCTTGGTT
TCTGTTGTGTATTGAAGGCTTGGATTCCAATTCCAACATCGCACGTGATG
CCGGTCCCTCGTTTGCTTGGGTCGAAAGGTGTTGCATCGGATCGGGGGAT
ACGAGCCGGAGAGGGGGGTGGGGGTGGCGGGGCACCGTGCGTACTTCTTG
CGCGATGCCGGGCTGCTCCTGAACCAGGCTCTCATCAACTACGGCATCGC
CTTCCTTCGGAAGCGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8261:247..4165-

>mRNA_E_fasciculatus_S2_contig8261.16409.1 ID=mRNA_E_fasciculatus_S2_contig8261.16409.1|Name=mRNA_E_fasciculatus_S2_contig8261.16409.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=570bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8261:247..4165- (Ectocarpus fasciculatus EfasUO2)
ATGCCTCTCGATATCAACATGTTTCGGCGAGAGCCCGACCTGATTCGGGA
ATCGCAGAGGAGGCGATTTGAGCCTGTGGAAATTGTGGACGAGGTGATCG
ACCTGGACACGAAATGGAGGGAAAGCCGGTCTCGCATCGACTTCCTCAAC
AAGGACAAGAACCGCTTCCAGAAGGAAGTGACCAAGGCCAAGAAGGCCGG
GGGGGAGGACCCCGAAAATGCGGCGAAGATCAAGGAGGTCGCCAAGGAGG
TCAAGGTCGTCGAAGCGAAGATGGTTGAGCTGAGCCAGAAGGTGTCGAAG
CTTTTGCCCAAGATCGGGAACATCGTGGCCGACGACGTGCCGGTGTCTGA
TGACGAGGACAAGGACAACAAGGTGGTCAGCACCTTCGGGCCTACGCCTA
CGGGGGAGAAGTTCATGCACCACCACGAGGTGTTGCATCGGATCGGGGGA
TACGAGCCGGAGAGGGGGGTGGGGGTGGCGGGGCACCGTGCGTACTTCTT
GCGCGATGCCGGGCTGCTCCTGAACCAGGCTCTCATCAACTACGGCATCG
CCTTCCTTCGGAAGCGGTGA
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