mRNA_E_fasciculatus_S2_contig8251.16400.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8251.16400.1
Unique NamemRNA_E_fasciculatus_S2_contig8251.16400.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: MSP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Z3_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 1.660e-73
Identity = 125/144 (86.81%), Postives = 130/144 (90.28%), Query Frame = 1
Query:    1 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSVTSKRT--------EIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACF 408
            PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSP+FSV+  R+        + KVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRA LDFPDQ  +
Sbjct:   42 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPHFSVSGPRSPQKLKALKQTKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAALDFPDQKAY 185          
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Hydrocephalus-inducing (protein, Hydin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJY6_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 3.670e-72
Identity = 125/152 (82.24%), Postives = 130/152 (85.53%), Query Frame = 1
Query:    1 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSVTSKRT-------------------EIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQ 399
            PRIVEFLNLEDNTSA+TSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSP+FSV+  R+                    +KVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQ
Sbjct:   98 PRIVEFLNLEDNTSAITSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPHFSVSGPRSPHKLKALKQTKRLTETLYVRMKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQ 249          
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJI6_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.030e-42
Identity = 77/145 (53.10%), Postives = 105/145 (72.41%), Query Frame = 1
Query:    1 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSVTSKR--------TEIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACFT 411
            PRIVE L++  ++  V S V L EPLF+P+PS + FEGY+AF + ++VL  RNNDSVNRR+K+L ++SP F+V+  R        ++ K+APGMEVC+VVTF+PQE+  Y+ EL+V TEREKF+VPV A G  A LD PD+  F+
Sbjct:   80 PRIVELLDVAASSVVVKSAVPLSEPLFRPYPSTITFEGYDAFNEVEQVLYLRNNDSVNRRVKVLAVESPYFTVSGPRRPGTLTQLSQSKIAPGMEVCFVVTFRPQEIEPYAAELVVATEREKFIVPVRATGRSAALDLPDRIAFS 224          
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N684_9CHLO)

HSP 1 Score: 141 bits (355), Expect = 1.170e-38
Identity = 69/145 (47.59%), Postives = 96/145 (66.21%), Query Frame = 1
Query:    1 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSVTSKRTEIK---------VAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACF 408
            PRI+E LN+ D T+   S V +D+P+FQP PS++ F GYE F + + +LC RNND   RR+K+LPL+SP FS+ + + + K         VAPGMEV Y +TF P+      V+L+V TEREK++VP+ A+G R  LDFPD+  F
Sbjct:   48 PRIIELLNMADFTNQTESAVDVDQPIFQPFPSQIEFFGYEPFKKYEALLCLRNNDKFGRRVKVLPLNSPYFSIAAAKKKGKSGHEEESGKVAPGMEVQYKITFSPKTTDDCGVDLIVATEREKYIVPIRAIGVRGALDFPDEIIF 192          
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKS6_9STRA)

HSP 1 Score: 140 bits (352), Expect = 8.370e-36
Identity = 76/136 (55.88%), Postives = 90/136 (66.18%), Query Frame = 1
Query:    4 RIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSVTS-KRTEIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACF 408
            R VE L LEDNTS + STV +D PLF+P P+ V F GYE F    K L FRN D V RR+K+LP  SP F ++  KR   KVAPGMEV + VTF+PQEVR YSV+L+  TEREKF+V V A G R  L  P +  F
Sbjct:   22 RPVELLCLEDNTSQINSTVPIDVPLFKPTPATVHFSGYEPFSTVTKTLRFRNGDYVARRIKVLPPKSPYFEISGGKRAASKVAPGMEVVFEVTFRPQEVREYSVDLVCCTEREKFIVQVKAAGFRPRLSLPSEVNF 157          
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Uncharacterized (protein n=5 Tax=Volvox TaxID=3066 RepID=A0A8J4DC66_9CHLO)

HSP 1 Score: 137 bits (346), Expect = 5.390e-35
Identity = 73/140 (52.14%), Postives = 93/140 (66.43%), Query Frame = 1
Query:    1 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSV----TSKRTEIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACF 408
            PRI+E LN+ D +  V   V +DEP+FQP P  V F  YEAF      L  RNND+V+RR+K+LP++SP FSV     + + + KVA GMEV +VVTF+P+    YS +L+V TEREKFVVPV A+G  A LDFPD   F
Sbjct:   63 PRIIEHLNIADFSHHVECKVPVDEPIFQPFPPEVTFHNYEAFQTYDATLYLRNNDNVSRRVKVLPMESPYFSVRRVAATGKDDSKVATGMEVAFVVTFRPESRDDYSCDLVVCTEREKFVVPVLAVGASAALDFPDLVEF 202          
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Uncharacterized (protein n=4 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3E6E5_CHLRE)

HSP 1 Score: 137 bits (345), Expect = 7.350e-35
Identity = 73/142 (51.41%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    1 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSV------TSKRTEIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACF 408
            PRI+E LN+ D +  V   V +DEP+FQP P  V F  YE F   +  L  RNND+V+RR+K+LP+DSP FSV       + + + KVA GMEV + VTFKP+    YS +L+V TEREKFVVPV A+G  A LDFPD   F
Sbjct:   61 PRIIEHLNIADFSHHVDCKVPIDEPIFQPFPPEVTFHNYEPFQTYEATLYLRNNDNVSRRVKVLPMDSPYFSVRRAAPPAAGKEDNKVATGMEVAFTVTFKPESRDDYSCDLVVCTEREKFVVPVLAVGASAALDFPDLVDF 202          
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Rhodanese (domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GI42_GONPE)

HSP 1 Score: 135 bits (340), Expect = 3.460e-34
Identity = 71/140 (50.71%), Postives = 92/140 (65.71%), Query Frame = 1
Query:    1 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSV----TSKRTEIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACF 408
            PRI+E LN+ D +  V   V +DEP+FQP P  V F  YE F   +  L  RNND+V+RR+K+LP++SP FSV     + + + KVA GMEV + VTF+P+    YS +L+V TEREKFVVPV A+G  A LDFPD   F
Sbjct:   94 PRIIEHLNIADFSHHVECKVPVDEPIFQPFPPEVTFHNYEPFQTYEATLYLRNNDNVSRRVKVLPMESPYFSVRRVQAAGKEDSKVATGMEVAFTVTFRPESRDDYSCDLVVCTEREKFVVPVLAVGASAALDFPDLVDF 233          
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Uncharacterized (protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XSJ4_9CHLO)

HSP 1 Score: 134 bits (337), Expect = 8.780e-34
Identity = 70/146 (47.95%), Postives = 92/146 (63.01%), Query Frame = 1
Query:    1 PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSVT----------SKRTEIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACF 408
            PRI+E LN+ D +  V   V +DEP+FQP P  V F  YE F   +  L  RNND+V+RR+K+LP+DSP FSV           + + + KVA GMEV + +TF+P+    YS +L++ TEREKFVVPV A+G  A LDFPD   F
Sbjct:   64 PRIIELLNIADFSHHVECKVPVDEPIFQPFPPEVTFHNYEPFQTYEATLYLRNNDNVSRRVKVLPMDSPYFSVRRAASGPGVVGASKEDSKVATGMEVAFTITFRPESRDDYSCDLIICTEREKFVVPVLAVGASAALDFPDCVDF 209          
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y448_AURAN)

HSP 1 Score: 133 bits (335), Expect = 1.630e-33
Identity = 71/141 (50.35%), Postives = 90/141 (63.83%), Query Frame = 1
Query:   10 VEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLCFRNNDSVNRRLKLLPLDSPNFSVTSKRT--------EIKVAPGMEVCYVVTFKPQEVRAYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACF 408
            +E L LEDNT+ V S+V +D PLFQP+P+ V F  Y  F   ++ L FRNND V RR+K+L   SP F V+            + KVA GMEVC+VV F+PQEVR Y V+L+  TEREKF+VPV A G RA L  P++  F
Sbjct:   20 IELLCLEDNTTQVHSSVGIDTPLFQPYPTEVRFRDYAPFSCIERTLRFRNNDHVARRIKVLQPKSPYFEVSGPHARGKDVTLKQSKVATGMEVCFVVKFRPQEVREYKVDLVCCTEREKFIVPVRAFGLRAALSLPEEVDF 160          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8251.16400.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
MSP1.660e-7386.81domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hydrocephalus-inducing3.670e-7282.24protein, Hydin-like protein n=1 Tax=Ectocarpus sil... [more]
Uncharacterized2.030e-4253.10protein (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
Hypothetical1.170e-3847.59protein (Fragment) n=1 Tax=Pyramimonas obovata Tax... [more]
Hypothetical8.370e-3655.88protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Uncharacterized5.390e-3552.14protein n=5 Tax=Volvox TaxID=3066 RepID=A0A8J4DC66... [more]
Uncharacterized7.350e-3551.41protein n=4 Tax=Chlamydomonas TaxID=3052 RepID=A0A... [more]
Rhodanese3.460e-3450.71domain-containing protein n=1 Tax=Gonium pectorale... [more]
Uncharacterized8.780e-3447.95protein n=1 Tax=Edaphochlamys debaryana TaxID=4728... [more]
Uncharacterized1.630e-3350.35protein n=1 Tax=Aureococcus anophagefferens TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8251contigE_fasciculatus_S2_contig8251:2639..3387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score243.4
Seed ortholog evalue6e-62
Seed eggNOG ortholog2880.D7FJY6
Preferred nameHYDIN
Model size411
KEGG koko:K17570
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0002064,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0009888,GO:0009987,GO:0016043,GO:0021591,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030855,GO:0032501,GO:0032502,GO:0032838,GO:0035082,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0048468,GO:0048513,GO:0048731,GO:0048856,GO:0048869,GO:0060271,GO:0060322,GO:0060429,GO:0060438,GO:0060541,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1904158,GO:1990716,GO:1990718
Exons2
EggNOG free text desc.axonemal central apparatus assembly
EggNOG OGs28HT9@1,2QQ4F@2759
Cds size411
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842485.583774-CDS-E_fasciculatus_S2_contig8251:2638..28561696842485.583774-CDS-E_fasciculatus_S2_contig8251:2638..2856Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8251 2639..2856 +
1696842485.6041346-CDS-E_fasciculatus_S2_contig8251:3194..33871696842485.6041346-CDS-E_fasciculatus_S2_contig8251:3194..3387Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8251 3195..3387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8251.16400.1prot_E_fasciculatus_S2_contig8251.16400.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8251 2639..3387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8251.16400.1

>prot_E_fasciculatus_S2_contig8251.16400.1 ID=prot_E_fasciculatus_S2_contig8251.16400.1|Name=mRNA_E_fasciculatus_S2_contig8251.16400.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=137bp
PRIVEFLNLEDNTSAVTSTVRLDEPLFQPHPSRVVFEGYEAFGQQQKVLC
FRNNDSVNRRLKLLPLDSPNFSVTSKRTEIKVAPGMEVCYVVTFKPQEVR
AYSVELMVVTEREKFVVPVGALGHRAVLDFPDQACFT
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mRNA from alignment at E_fasciculatus_S2_contig8251:2639..3387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8251.16400.1 ID=mRNA_E_fasciculatus_S2_contig8251.16400.1|Name=mRNA_E_fasciculatus_S2_contig8251.16400.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=749bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8251:2639..3387+ (Ectocarpus fasciculatus EfasUO2)
CCGCGCATCGTAGAGTTCCTTAACTTGGAGGACAACACCTCGGCGGTCAC GAGCACGGTAAGGCTGGATGAGCCGCTGTTTCAGCCCCACCCCTCGAGAG TTGTGTTCGAGGGGTACGAGGCGTTCGGTCAGCAGCAGAAGGTGCTGTGC TTCAGGAACAACGACTCGGTCAACCGTCGGCTCAAGCTTCTTCCCCTGGA CAGCCCTAACTTCTCGGTGTCCGGTCCTCGCAGCCCGCACAAGCTGAAGG CTCTCAAGCAAACCAAGGTGTGGTAACCTGCGGACTGCAGAAATTGCTGC TGCTGTCACACAGAGTCCGAAGGCGTGATGTTATCATCCTACCGGCTCGG AATGTTCACATTCTCCTGTAACGCGTTCAATATCGTCAACTAGAGAGAGC CCTTGTAAGAGATCAAGGTTCCGACCGACCTCTATTGGTACGGGGCTGTT GTCAAATGGTTTTTTAAGGTGCGGCGGTGCGGTAGTTTTGCAGCGCTGCG TGGTACGGCGTTGTTTCTGTCTAATTTCCGACTACGTCGTGGGTAGAGGC TCACAGAACCTCGAAACGTACGGAAATAAAGGTGGCCCCCGGCATGGAGG TGTGTTACGTGGTGACCTTCAAGCCGCAAGAGGTCCGGGCCTACTCGGTC GAGCTGATGGTCGTCACGGAGAGGGAGAAGTTCGTCGTTCCCGTTGGAGC TCTCGGGCACCGCGCCGTGCTGGATTTTCCTGACCAGGCATGTTTTACG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8251:2639..3387+

>mRNA_E_fasciculatus_S2_contig8251.16400.1 ID=mRNA_E_fasciculatus_S2_contig8251.16400.1|Name=mRNA_E_fasciculatus_S2_contig8251.16400.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=411bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8251:2639..3387+ (Ectocarpus fasciculatus EfasUO2)
CCGCGCATCGTAGAGTTCCTTAACTTGGAGGACAACACCTCGGCGGTCAC
GAGCACGGTAAGGCTGGATGAGCCGCTGTTTCAGCCCCACCCCTCGAGAG
TTGTGTTCGAGGGGTACGAGGCGTTCGGTCAGCAGCAGAAGGTGCTGTGC
TTCAGGAACAACGACTCGGTCAACCGTCGGCTCAAGCTTCTTCCCCTGGA
CAGCCCTAACTTCTCGGTAACCTCGAAACGTACGGAAATAAAGGTGGCCC
CCGGCATGGAGGTGTGTTACGTGGTGACCTTCAAGCCGCAAGAGGTCCGG
GCCTACTCGGTCGAGCTGATGGTCGTCACGGAGAGGGAGAAGTTCGTCGT
TCCCGTTGGAGCTCTCGGGCACCGCGCCGTGCTGGATTTTCCTGACCAGG
CATGTTTTACG
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