mRNA_E_fasciculatus_S2_contig8247.16393.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8247.16393.1
Unique NamemRNA_E_fasciculatus_S2_contig8247.16393.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8247.16393.1 vs.
Match: 50S (ribosomal protein L1, chloroplastic n=3 Tax=Ectocarpales TaxID=2877 RepID=D1J715_ECTSI)

HSP 1 Score: 409 bits (1050), Expect = 1.530e-143
Identity = 209/218 (95.87%), Postives = 216/218 (99.08%), Query Frame = 2 
Query:    2 QKVEKRLYNQTEAISLLKETANANFIESVEAHISLAIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLESITSEYKNLADIIGSDDLIESITKGDLDFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVMLTLEEFKKGKLEYRADKTGIVHLLLGKSNFTDSDLLENLVAVYNSIENNKPPGVKGRYFKTFHICTTMGPSIEIDISGLKL 655
            Q VEKRLYN+TEAISLLKETANANFIESVEAHISLAIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLE+ITSEYK+LADIIGSDDLIE+ITKGDL+FDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVMLTLEEFKKGKLEYRADKTGIVHLL+GKSNFTDSDLLENLVAVYNSIENNKPPGVKGRYFKTFHIC+TMGPSIEIDIS LKL
Sbjct:   13 QNVEKRLYNRTEAISLLKETANANFIESVEAHISLAIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLETITSEYKDLADIIGSDDLIETITKGDLNFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVMLTLEEFKKGKLEYRADKTGIVHLLIGKSNFTDSDLLENLVAVYNSIENNKPPGVKGRYFKTFHICSTMGPSIEIDISDLKL 230
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8247.16393.1 vs.
Match: Ribosomal (protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EV19_9PHAE)

HSP 1 Score: 394 bits (1011), Expect = 1.290e-137
Identity = 198/217 (91.24%), Postives = 211/217 (97.24%), Query Frame = 2 
Query:    2 QKVEKRLYNQTEAISLLKETANANFIESVEAHISLAIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLESITSEYKNLADIIGSDDLIESITKGDLDFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVMLTLEEFKKGKLEYRADKTGIVHLLLGKSNFTDSDLLENLVAVYNSIENNKPPGVKGRYFKTFHICTTMGPSIEIDISGLK 652
            QKVE+RLYNQTEAISLLKETANANFIESVEAH+SL+IDPKYSDQQLRSTLILPKGTG TKRIAVLMPLE+IT EY+NLAD+IGSDDLIE+ITKG LDFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDV +TLEEFKKGKLEYRADKTGIVHL++GKSNFTDSDLLENL+AVY SIENNKPPGVKGRYFKTFHIC+TMGPSIE+DIS LK
Sbjct:   13 QKVEERLYNQTEAISLLKETANANFIESVEAHVSLSIDPKYSDQQLRSTLILPKGTGTTKRIAVLMPLEAITPEYQNLADVIGSDDLIETITKGGLDFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVKVTLEEFKKGKLEYRADKTGIVHLMIGKSNFTDSDLLENLLAVYKSIENNKPPGVKGRYFKTFHICSTMGPSIELDISTLK 229
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8247.16393.1 vs.
Match: 50S (ribosomal protein L1, chloroplastic n=33 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6MAX7_UNDPI)

HSP 1 Score: 390 bits (1003), Expect = 2.220e-136
Identity = 199/218 (91.28%), Postives = 208/218 (95.41%), Query Frame = 2 
Query:    2 QKVEKRLYNQTEAISLLKETANANFIESVEAHISLAIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLESITSEYKNLADIIGSDDLIESITKGDLDFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVMLTLEEFKKGKLEYRADKTGIVHLLLGKSNFTDSDLLENLVAVYNSIENNKPPGVKGRYFKTFHICTTMGPSIEIDISGLKL 655
            QK+EK LYNQ +AI LLKETANA FIESVEAHISL+IDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLESIT EYK LADIIGSDDLIE ITKGD++FDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDV LTLEEFKKGKLEYRADKTGIVHLL+GKS+FTDSDLLENL+AVY SIENNKPPGVKGRYFKTFHIC+TMGPSIEIDIS LKL
Sbjct:   13 QKIEKHLYNQDDAIRLLKETANAKFIESVEAHISLSIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLESITPEYKELADIIGSDDLIEIITKGDINFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVKLTLEEFKKGKLEYRADKTGIVHLLIGKSDFTDSDLLENLIAVYTSIENNKPPGVKGRYFKTFHICSTMGPSIEIDISTLKL 230
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8247.16393.1 vs.
Match: Ribosomal (protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9R0_9PHAE)

HSP 1 Score: 390 bits (1003), Expect = 2.220e-136
Identity = 196/218 (89.91%), Postives = 209/218 (95.87%), Query Frame = 2 
Query:    2 QKVEKRLYNQTEAISLLKETANANFIESVEAHISLAIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLESITSEYKNLADIIGSDDLIESITKGDLDFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVMLTLEEFKKGKLEYRADKTGIVHLLLGKSNFTDSDLLENLVAVYNSIENNKPPGVKGRYFKTFHICTTMGPSIEIDISGLKL 655
            QK+EK LYN+++AI LLKETANANF+ESVEAHISL+IDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLE+IT EYK LADI+GSDDLIE ITKGDL+FDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTD+ LTLEEFKKGKLEYRADKTGIVHLL+GKSNF DSDLLENLVAVY SIENNKPPGVKGRYFKTFHIC+TMGPSIEID+S LKL
Sbjct:   13 QKIEKSLYNESDAIRLLKETANANFVESVEAHISLSIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLETITPEYKELADIVGSDDLIEMITKGDLNFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDIKLTLEEFKKGKLEYRADKTGIVHLLIGKSNFADSDLLENLVAVYTSIENNKPPGVKGRYFKTFHICSTMGPSIEIDLSTLKL 230
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8247.16393.1 vs.
Match: Ribosomal (protein n=1 Tax=Postelsia palmaeformis TaxID=105414 RepID=A0A8F0F916_9PHAE)

HSP 1 Score: 384 bits (986), Expect = 8.650e-134
Identity = 193/217 (88.94%), Postives = 206/217 (94.93%), Query Frame = 2 
Query:    2 QKVEKRLYNQTEAISLLKETANANFIESVEAHISLAIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLESITSEYKNLADIIGSDDLIESITKGDLDFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVMLTLEEFKKGKLEYRADKTGIVHLLLGKSNFTDSDLLENLVAVYNSIENNKPPGVKGRYFKTFHICTTMGPSIEIDISGLK 652
            QKVEKRLY+Q +AI +LKETANA F+ESVEAHISL+IDPKYSDQQLRSTLILPKGTG TKRIAVLMPLESIT EYK LAD+IGSDDLIE+ITKGD++FDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDV LTLEEFKKGKLEYRADKTGIVHLL+GKSNF DSDLLENL AVY SIENNKPPGVKGRYFKTFHIC+TMGP+IEIDI+ LK
Sbjct:   13 QKVEKRLYSQNDAIRILKETANAKFVESVEAHISLSIDPKYSDQQLRSTLILPKGTGNTKRIAVLMPLESITPEYKELADLIGSDDLIETITKGDINFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVKLTLEEFKKGKLEYRADKTGIVHLLIGKSNFADSDLLENLFAVYTSIENNKPPGVKGRYFKTFHICSTMGPAIEIDIAALK 229
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8247.16393.1 vs.
Match: Ribosomal (protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZW3_9PHAE)

HSP 1 Score: 379 bits (973), Expect = 8.270e-132
Identity = 193/218 (88.53%), Postives = 204/218 (93.58%), Query Frame = 2 
Query:    2 QKVEKRLYNQTEAISLLKETANANFIESVEAHISLAIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLESITSEYKNLADIIGSDDLIESITKGDLDFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVMLTLEEFKKGKLEYRADKTGIVHLLLGKSNFTDSDLLENLVAVYNSIENNKPPGVKGRYFKTFHICTTMGPSIEIDISGLKL 655
            QKVEKRLY Q EAI LLKETANANF+ESVEAHISL+IDPKYSDQQLRSTLILPKGTGK KRIAVLMPLESIT EYK LADIIGSDDLIE+ITKG ++FDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDV LTLEEFKKGK+EYRADKTGIVHLLLGKS+F + DLLENL  VYNSIENNKPPGVKGRYFKTF+IC+TMGP+IEIDIS  KL
Sbjct:   13 QKVEKRLYQQEEAIRLLKETANANFVESVEAHISLSIDPKYSDQQLRSTLILPKGTGKKKRIAVLMPLESITPEYKQLADIIGSDDLIETITKGQINFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVKLTLEEFKKGKVEYRADKTGIVHLLLGKSDFPEEDLLENLETVYNSIENNKPPGVKGRYFKTFYICSTMGPAIEIDISAFKL 230
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8247.16393.1 vs.
Match: Ribosomal (protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7E6_9PHAE)

HSP 1 Score: 367 bits (941), Expect = 6.200e-127
Identity = 180/217 (82.95%), Postives = 202/217 (93.09%), Query Frame = 2 
Query:    2 QKVEKRLYNQTEAISLLKETANANFIESVEAHISLAIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLESITSEYKNLADIIGSDDLIESITKGDLDFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVMLTLEEFKKGKLEYRADKTGIVHLLLGKSNFTDSDLLENLVAVYNSIENNKPPGVKGRYFKTFHICTTMGPSIEIDISGLK 652
            +K+E RLY + EAI LLK+TANA F+ES+EAHISL+IDPKYSDQQLRSTLILPKGTGK KRIAVLMPL+ IT EYK LADIIGSDDLIE I KG++DFDILI+TPDMMPKLAKLGR+LGPKGLMPSPKAGTVTTD+ LTLEEFK+GKLEYRADKTGIVHLL+GKS+FT+SDLL+NL A+Y SIENNKPPGVKG+YFKTFH+C+TMGPSIEIDIS LK
Sbjct:   13 EKIENRLYTKEEAIMLLKDTANARFVESIEAHISLSIDPKYSDQQLRSTLILPKGTGKIKRIAVLMPLDGITQEYKELADIIGSDDLIELIAKGNIDFDILISTPDMMPKLAKLGRVLGPKGLMPSPKAGTVTTDIRLTLEEFKRGKLEYRADKTGIVHLLIGKSDFTNSDLLDNLTAIYTSIENNKPPGVKGQYFKTFHLCSTMGPSIEIDISELK 229
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8247.16393.1 vs.
Match: 50S (ribosomal protein L1, chloroplastic n=15 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSK4_9PHAE)

HSP 1 Score: 362 bits (929), Expect = 4.030e-125
Identity = 180/217 (82.95%), Postives = 203/217 (93.55%), Query Frame = 2 
Query:    2 QKVEKRLYNQTEAISLLKETANANFIESVEAHISLAIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLESITSEYKNLADIIGSDDLIESITKGDLDFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVMLTLEEFKKGKLEYRADKTGIVHLLLGKSNFTDSDLLENLVAVYNSIENNKPPGVKGRYFKTFHICTTMGPSIEIDISGLK 652
            QKVEKRLY+Q EAI+L+KETANA F+ES+E H++L+IDPKYSDQQLRSTLILPKGTGKTKRIAVL+  E+I  EY  LADIIGSDDLIE+IT+G+LDFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTD+ LTL+EFKKGK+EYRADKTGIVHLL+GKSNFT+SDLLENLVA+Y SIENNKP GVKGRYFKTFH+ +TMGPSI++DIS LK
Sbjct:   13 QKVEKRLYHQNEAINLVKETANAKFVESIEVHVALSIDPKYSDQQLRSTLILPKGTGKTKRIAVLISSEAIKPEYLELADIIGSDDLIETITRGELDFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDIGLTLQEFKKGKVEYRADKTGIVHLLIGKSNFTESDLLENLVAIYTSIENNKPVGVKGRYFKTFHVSSTMGPSIQLDISTLK 229
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8247.16393.1 vs.
Match: Ribosomal (protein n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ22_9PHAE)

HSP 1 Score: 353 bits (906), Expect = 1.240e-121
Identity = 177/214 (82.71%), Postives = 199/214 (92.99%), Query Frame = 2 
Query:    2 QKVEKRLYNQTEAISLLKETANANFIESVEAHISLAIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLESITSEYKNLADIIGSDDLIESITKGDLDFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVMLTLEEFKKGKLEYRADKTGIVHLLLGKSNFTDSDLLENLVAVYNSIENNKPPGVKGRYFKTFHICTTMGPSIEIDIS 643
            QK+EKRLYNQ EAI+L+KETANA FIES+E HISL+IDPKYSDQQLRSTLILPKGTGKTKRIA+L+  E++TS+Y  L DI+GSDDLIE+ITKG+L FDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTD+  TL+EFKKGKLEYRADKTGIVHL +GKSNFTDSDLLENL+ VY+SIENNKP GVKGRYFKTF+I +TMGPSI++DIS
Sbjct:   13 QKIEKRLYNQNEAIALIKETANAQFIESIEVHISLSIDPKYSDQQLRSTLILPKGTGKTKRIALLVAPEALTSKYLELVDIVGSDDLIETITKGELYFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDIDSTLDEFKKGKLEYRADKTGIVHLSIGKSNFTDSDLLENLMTVYHSIENNKPTGVKGRYFKTFYISSTMGPSIQLDIS 226
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8247.16393.1 vs.
Match: 50S (ribosomal protein L1 n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NJL1_9CYAN)

HSP 1 Score: 352 bits (903), Expect = 3.670e-121
Identity = 169/217 (77.88%), Postives = 199/217 (91.71%), Query Frame = 2 
Query:    2 QKVEKRLYNQTEAISLLKETANANFIESVEAHISLAIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPLESITSEYKNLADIIGSDDLIESITKGDLDFDILIATPDMMPKLAKLGRILGPKGLMPSPKAGTVTTDVMLTLEEFKKGKLEYRADKTGIVHLLLGKSNFTDSDLLENLVAVYNSIENNKPPGVKGRYFKTFHICTTMGPSIEIDISGLK 652
            QK+  RLY + EAI LLKETANA F+ES+E H++LAIDPKYSDQQLRSTLILPKGTGKTKRIAVLMP ESIT EYK LAD++GS+DLI+ I +G+LDFDIL++TPDMMPKLAK+GRILGP+GLMPSPKAGTVT D+ +TLEEFKKGKLEYRADKTGIVHLL+GKSNFT+SDLLENL+++Y S+ENN+P GVKG+YFKTFHIC+TMGPSI++D+S  K
Sbjct:   13 QKITNRLYQKEEAILLLKETANAKFVESIEVHVALAIDPKYSDQQLRSTLILPKGTGKTKRIAVLMPAESITPEYKLLADLVGSEDLIDLINQGNLDFDILLSTPDMMPKLAKVGRILGPRGLMPSPKAGTVTNDIKITLEEFKKGKLEYRADKTGIVHLLIGKSNFTNSDLLENLISIYTSLENNRPSGVKGKYFKTFHICSTMGPSIQLDLSTFK 229
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8247.16393.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
50S1.530e-14395.87ribosomal protein L1, chloroplastic n=3 Tax=Ectoca... [more]
Ribosomal1.290e-13791.24protein n=1 Tax=Cladosiphon okamuranus TaxID=30973... [more]
50S2.220e-13691.28ribosomal protein L1, chloroplastic n=33 Tax=Phaeo... [more]
Ribosomal2.220e-13689.91protein n=1 Tax=Chorda asiatica TaxID=1281577 RepI... [more]
Ribosomal8.650e-13488.94protein n=1 Tax=Postelsia palmaeformis TaxID=10541... [more]
Ribosomal8.270e-13288.53protein n=1 Tax=Desmarestia aculeata TaxID=62298 R... [more]
Ribosomal6.200e-12782.95protein n=1 Tax=Protohalopteris sp. TaxID=2843287 ... [more]
50S4.030e-12582.95ribosomal protein L1, chloroplastic n=15 Tax=Sarga... [more]
Ribosomal1.240e-12182.71protein n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ... [more]
50S3.670e-12177.88ribosomal protein L1 n=1 Tax=Moorena sp. SIO3C2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8247contigE_fasciculatus_S2_contig8247:2..679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score296.2
Seed ortholog evalue8.8e-78
Seed eggNOG ortholog2880.D1J715
Preferred namerpl1
Model size678
KEGG koko:K00465,ko:K02863
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031984,GO:0032543,GO:0032991,GO:0034357,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0042651,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0055035,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098798,GO:0140053,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0081@1,KOG1569@2759
Cds size462
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842485.1158338-UTR-E_fasciculatus_S2_contig8247:1..1971696842485.1158338-UTR-E_fasciculatus_S2_contig8247:1..197Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8247 2..197 +
1696842485.1367605-UTR-E_fasciculatus_S2_contig8247:659..6791696842485.1367605-UTR-E_fasciculatus_S2_contig8247:659..679Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8247 660..679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842485.1268384-CDS-E_fasciculatus_S2_contig8247:197..6591696842485.1268384-CDS-E_fasciculatus_S2_contig8247:197..659Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8247 198..659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8247.16393.1prot_E_fasciculatus_S2_contig8247.16393.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8247 198..659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8247.16393.1

>prot_E_fasciculatus_S2_contig8247.16393.1 ID=prot_E_fasciculatus_S2_contig8247.16393.1|Name=mRNA_E_fasciculatus_S2_contig8247.16393.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=154bp
MPLESITSEYKNLADIIGSDDLIESITKGDLDFDILIATPDMMPKLAKLG
RILGPKGLMPSPKAGTVTTDVMLTLEEFKKGKLEYRADKTGIVHLLLGKS
NFTDSDLLENLVAVYNSIENNKPPGVKGRYFKTFHICTTMGPSIEIDISG
LKL*
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mRNA from alignment at E_fasciculatus_S2_contig8247:2..679+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8247.16393.1 ID=mRNA_E_fasciculatus_S2_contig8247.16393.1|Name=mRNA_E_fasciculatus_S2_contig8247.16393.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=678bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8247:2..679+ (Ectocarpus fasciculatus EfasUO2)
ACAAAAAGTAGAGAAACGCTTATATAATCAAACTGAAGCGATTAGTCTTT
TAAAAGAAACTGCAAATGCTAACTTTATAGAATCTGTAGAAGCACATATT
TCTTTAGCAATCGATCCTAAATATAGCGATCAACAATTACGGAGTACTTT
AATTTTACCTAAAGGAACTGGGAAAACGAAACGTATAGCAGTATTAATGC
CTTTAGAAAGTATCACGTCAGAATATAAAAATTTAGCTGATATAATTGGT
TCTGATGATTTAATTGAAAGCATAACTAAAGGGGATCTTGATTTTGATAT
ATTAATCGCTACCCCAGATATGATGCCAAAATTAGCTAAATTAGGTAGAA
TATTAGGACCAAAAGGGTTAATGCCATCACCAAAAGCTGGTACAGTAACA
ACTGATGTAATGTTAACTTTAGAAGAATTTAAAAAAGGTAAATTAGAATA
CAGGGCTGATAAAACTGGTATTGTTCATTTATTGCTTGGGAAAAGTAATT
TTACTGATTCAGATTTATTAGAAAATTTAGTAGCTGTTTATAATTCAATT
GAAAATAATAAGCCACCAGGTGTAAAAGGTCGTTATTTCAAAACTTTCCA
TATTTGTACCACTATGGGCCCTTCAATCGAAATTGATATCTCTGGCTTAA
AATTATAAAATTCATTATCTGTTTGACA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8247:2..679+

>mRNA_E_fasciculatus_S2_contig8247.16393.1 ID=mRNA_E_fasciculatus_S2_contig8247.16393.1|Name=mRNA_E_fasciculatus_S2_contig8247.16393.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=462bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8247:2..679+ (Ectocarpus fasciculatus EfasUO2)
ATGCCTTTAGAAAGTATCACGTCAGAATATAAAAATTTAGCTGATATAAT
TGGTTCTGATGATTTAATTGAAAGCATAACTAAAGGGGATCTTGATTTTG
ATATATTAATCGCTACCCCAGATATGATGCCAAAATTAGCTAAATTAGGT
AGAATATTAGGACCAAAAGGGTTAATGCCATCACCAAAAGCTGGTACAGT
AACAACTGATGTAATGTTAACTTTAGAAGAATTTAAAAAAGGTAAATTAG
AATACAGGGCTGATAAAACTGGTATTGTTCATTTATTGCTTGGGAAAAGT
AATTTTACTGATTCAGATTTATTAGAAAATTTAGTAGCTGTTTATAATTC
AATTGAAAATAATAAGCCACCAGGTGTAAAAGGTCGTTATTTCAAAACTT
TCCATATTTGTACCACTATGGGCCCTTCAATCGAAATTGATATCTCTGGC
TTAAAATTATAA
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