mRNA_E_fasciculatus_S2_contig8245.16392.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8245.16392.1
Unique NamemRNA_E_fasciculatus_S2_contig8245.16392.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8245.16392.1 vs.
Match: PHD (finger protein 5A n=1 Tax=Ficedula albicollis TaxID=59894 RepID=U3KBT6_FICAL)

HSP 1 Score: 208 bits (529), Expect = 5.320e-60
Identity = 94/117 (80.34%), Postives = 101/117 (86.32%), Query Frame = 1 
Query:  586 GDIHRIESVLRHHAAIIPA--AIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR*CW 930
            GD    ESV+  H  +  A  AIGRLCEKCDGKCV+CDSYVRPCTLVRICDECNYGS++GRC ICGGPG+SDAYYC+ECT QEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR  W
Sbjct:   24 GDTRYRESVVGCHEGLFWAGEAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKRSLW 140
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8245.16392.1 vs.
Match: PHD (finger-like domain-containing protein 5B n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FPW2_GLYSO)

HSP 1 Score: 208 bits (529), Expect = 1.210e-59
Identity = 98/147 (66.67%), Postives = 112/147 (76.19%), Query Frame = 1 
Query:  499 PSPLRHLLTPPAFLGTTYCCTCFPASLDLGDIHRIESVLRHHAAIIPA------AIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 921
            PSPL    + P+    ++  T    SL       +E++ +HH  +I        AIGRLCEKCDGKCV+CDSYVRPCTLVR+CDECNYGSF+GRC ICGG GISDAYYC+ECTQQEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:   35 PSPLH---SSPSLASFSFASTVTQPSLFRVLAQVVENMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 178
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8245.16392.1 vs.
Match: PHD (finger-like domain-containing protein 5A isoform X1 n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007ACE047)

HSP 1 Score: 206 bits (525), Expect = 1.760e-59
Identity = 94/126 (74.60%), Postives = 103/126 (81.75%), Query Frame = 1 
Query:  562 CFPASLDLGDIHRIESVLRHHAAII------PAAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 921
            C  AS+ L    R   + +HH  +I        AIGRLCEKCDGKCV+CDSYVRPCTLVRICDECNYGS++GRC ICGGPG+SDAYYC+ECT QEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:   24 CIAASIWLAVCGRAFIMAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 149
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8245.16392.1 vs.
Match: Uncharacterized (protein n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6A5M4Z6_LUPAL)

HSP 1 Score: 204 bits (520), Expect = 3.600e-59
Identity = 90/113 (79.65%), Postives = 100/113 (88.50%), Query Frame = 1 
Query:  601 IESVLRHHAAIIPA------AIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 921
            +E++ +HH  +I        AIGRLCEKCDGKCV+CDSYVRPCTLVR+CDECNYGSF+GRC ICGG GISDAYYC+ECTQQEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:    8 VENMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 120
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8245.16392.1 vs.
Match: Uncharacterized (protein n=5 Tax=Eukaryota TaxID=2759 RepID=A0A022QQC9_ERYGU)

HSP 1 Score: 204 bits (519), Expect = 3.640e-59
Identity = 90/108 (83.33%), Postives = 97/108 (89.81%), Query Frame = 1 
Query:  616 RHHAAIIPA------AIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 921
            +HH  +I        AIGRLCEKCDGKCV+CDSYVRPCTLVR+CDECNYGSF+GRC ICGGPGISDAYYC+ECTQQEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:    3 KHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGPGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8245.16392.1 vs.
Match: PHD (finger protein 5A n=2 Tax=Passeriformes TaxID=9126 RepID=A0A803VBF5_FICAL)

HSP 1 Score: 205 bits (522), Expect = 9.200e-59
Identity = 93/114 (81.58%), Postives = 100/114 (87.72%), Query Frame = 1 
Query:  586 GDIHRIESVLRHHAAIIPA--AIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 921
            GD    ESV+  H  +  A  AIGRLCEKCDGKCV+CDSYVRPCTLVRICDECNYGS++GRC ICGGPG+SDAYYC+ECT QEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:   24 GDTRYRESVVGCHEGLFWAGEAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 137
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8245.16392.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Citrus unshiu TaxID=55188 RepID=A0A2H5ND77_CITUN)

HSP 1 Score: 204 bits (520), Expect = 1.090e-58
Identity = 90/113 (79.65%), Postives = 100/113 (88.50%), Query Frame = 1 
Query:  601 IESVLRHHAAIIPA------AIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 921
            +E++ +HH  +I        AIGRLCEKCDGKCV+CDSYVRPCTLVR+CDECNYGSF+GRC ICGG GISDAYYC+ECTQQEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:   42 VETMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 154
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8245.16392.1 vs.
Match: Uncharacterized (protein n=15 Tax=Eukaryota TaxID=2759 RepID=M4E1W9_BRARP)

HSP 1 Score: 204 bits (518), Expect = 1.140e-58
Identity = 92/111 (82.88%), Postives = 99/111 (89.19%), Query Frame = 1 
Query:  607 SVLRHHAAIIPA------AIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 921
            ++ +HH  +I        AIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSF+GRCTICGG GISDAYYC+ECTQQEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:   25 AMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFQGRCTICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 135
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8245.16392.1 vs.
Match: Hypothetical (protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HIU9_9EUKA)

HSP 1 Score: 204 bits (518), Expect = 1.390e-58
Identity = 90/112 (80.36%), Postives = 98/112 (87.50%), Query Frame = 1 
Query:  604 ESVLRHHAAIIPA------AIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 921
             ++ +HH  +I        A+GRLCEKCDGKC +CDSYVRPCTLVRICDECNYGS+EGRC ICGGPGISDAYYC+ECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:   30 RTMAKHHPDLIMCRKQPGIAVGRLCEKCDGKCPICDSYVRPCTLVRICDECNYGSYEGRCVICGGPGISDAYYCKECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 141
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8245.16392.1 vs.
Match: PHD (finger-like domain-containing protein 5A isoform X2 n=2 Tax=Amniota TaxID=32524 RepID=A0A2Y9Q0D8_DELLE)

HSP 1 Score: 202 bits (514), Expect = 1.390e-58
Identity = 87/95 (91.58%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:  637 PAAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSFEGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 921
            P AIGRLCEKCDGKCV+CDSYVRPCTLVRICDECNYGS++GRC ICGGPG+SDAYYC+ECT QEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR
Sbjct:    6 PHAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 100
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8245.16392.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PHD5.320e-6080.34finger protein 5A n=1 Tax=Ficedula albicollis TaxI... [more]
PHD1.210e-5966.67finger-like domain-containing protein 5B n=1 Tax=G... [more]
PHD1.760e-5974.60finger-like domain-containing protein 5A isoform X... [more]
Uncharacterized3.600e-5979.65protein n=3 Tax=Mesangiospermae TaxID=1437183 RepI... [more]
Uncharacterized3.640e-5983.33protein n=5 Tax=Eukaryota TaxID=2759 RepID=A0A022Q... [more]
PHD9.200e-5981.58finger protein 5A n=2 Tax=Passeriformes TaxID=9126... [more]
Uncharacterized1.090e-5879.65protein (Fragment) n=1 Tax=Citrus unshiu TaxID=551... [more]
Uncharacterized1.140e-5882.88protein n=15 Tax=Eukaryota TaxID=2759 RepID=M4E1W9... [more]
Hypothetical1.390e-5880.36protein n=1 Tax=Phaeocystis antarctica TaxID=33657... [more]
PHD1.390e-5891.58finger-like domain-containing protein 5A isoform X... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8245contigE_fasciculatus_S2_contig8245:2489..5579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score210.3
Seed ortholog evalue6.5e-52
Seed eggNOG ortholog2880.D7G4T7
Preferred namePHF5A
Model size2142
KEGG koko:K12834
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005686,GO:0005689,GO:0005737,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009410,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034399,GO:0034622,GO:0034641,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
Exons3
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG1705@1,KOG1705@2759
Ec32 ortholog descriptionU2 snRNP protein Rds3p
Ec32 orthologEc-20_000410.1
Cds size471
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842485.0310166-UTR-E_fasciculatus_S2_contig8245:2488..37061696842485.0310166-UTR-E_fasciculatus_S2_contig8245:2488..3706Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8245 2489..3706 -
1696842485.083943-UTR-E_fasciculatus_S2_contig8245:5126..55791696842485.083943-UTR-E_fasciculatus_S2_contig8245:5126..5579Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8245 5127..5579 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842485.0526147-CDS-E_fasciculatus_S2_contig8245:3706..38741696842485.0526147-CDS-E_fasciculatus_S2_contig8245:3706..3874Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8245 3707..3874 -
1696842485.0630784-CDS-E_fasciculatus_S2_contig8245:4142..42311696842485.0630784-CDS-E_fasciculatus_S2_contig8245:4142..4231Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8245 4143..4231 -
1696842485.0734537-CDS-E_fasciculatus_S2_contig8245:4912..51261696842485.0734537-CDS-E_fasciculatus_S2_contig8245:4912..5126Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8245 4913..5126 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8245.16392.1prot_E_fasciculatus_S2_contig8245.16392.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8245 3707..5126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8245.16392.1

>prot_E_fasciculatus_S2_contig8245.16392.1 ID=prot_E_fasciculatus_S2_contig8245.16392.1|Name=mRNA_E_fasciculatus_S2_contig8245.16392.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=157bp
MCMYPQPAGSLYLLVPSPLRHLLTPPAFLGTTYCCTCFPASLDLGDIHRI
ESVLRHHAAIIPAAIGRLCEKCDGKCVVCDSYVRPCTLVRICDECNYGSF
EGRCTICGGPGISDAYYCRECTQQEKDRDGCPKIVNLGSSKTDLFYERKK
YGFKKR*
back to top

mRNA from alignment at E_fasciculatus_S2_contig8245:2489..5579-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8245.16392.1 ID=mRNA_E_fasciculatus_S2_contig8245.16392.1|Name=mRNA_E_fasciculatus_S2_contig8245.16392.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3091bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8245:2489..5579- (Ectocarpus fasciculatus EfasUO2)
GGTATCTTGGCCTGTCCGCGAGGAACCAGAAACGGCGGGTACTGCTACAA
TGTTGTCTCGTCTCGGTTGGCACTGGCACATCTACAGAGCAGCCTAACCT
ATGATATGTATGCACGCCATCGCGCGGGCCTGCACCTCAAGTCACCTGTT
GATTGTCCCACCTCGGTTGAAAGCAGATTTGTTTATTTTAGTTGACCATG
GTGCCTTGCCCGTCGCTACAAGGGCGGCCGGTACACCCGCAAAAAGGAAA
AACTCAAAACTCTGCTGTACGCAACCAACCATCGTCCCGCCGCTCATCGC
CTCCGGATTTTCCTCGTCTCATCACCATGCAGCAAGCAGCAAGCAGCAAG
CAGCAAGCAGCAAGCAGCAAGCAGCAAGCTTGGGGGTGGATTCTCAAGTT
TCCTGAGCACAATAGTCTGCCGACGTCCCCATTTGTTGTACGCTCGCCTG
CATATGTGTATGTACCCTCAGCCTGCAGGATCCCTCTACTTGCTCGTGCC
TTCTCCTCTCCGTCACTTACTTACCCCGCCTGCCTTCCTCGGCACGACCT
ACTGCTGTACCTGTTTTCCCGCGTCCCTCGATCTTGGTGATATCCATCGA
ATCGAATCGGTTCTGCGCCACCACGCTGCAATCATCCCGGCAGCCATCGG
CCGGCTGTGCGAGAAATGTAAGAGATGGGATCAAGCCTAGAGTTATTTTC
CTCATGGCGTGTACTACTATAAGAGAAGTATGTGTTGCAGCATTTCGACA
GGCCTCTTTGCAACAGTCTGGTAGTTTTTTGGACCCGCACCAGCTCTCGC
TCGCTTTTGACGTTCGCTTTTGACGTGAGGTACTGCGACAGCGGCTACAC
CGCTCTGTCGCGGCCGACACAACGGGGGCATCAAGACTGCGCTACGTAGA
AGCAACCTGACCTTTTCACCCGGTACCGTTCTCTGATGATGAGATAACAG
ATTGATGTCGTTGTGCGCGGTCTCGACTCTGCCTGACCCGTCTTCCCGGG
ACACGGCTGGCTATTGTATTGCATGCTATACAGTAGCATCTACTGATATG
CACATTGCTGTGTTTAACCCTCCCCTTTCCACCACCACCAGTATGGGTCA
TCCTTGTGAACCGTAGCCTGGGCCGGCGAAAACCCGGCATATCGCCCCGT
CCCGGCATGCGTTTACATGAGTAAAGCCCCCCTACCACCACCACCACCAC
CCGCTCACGCCCGCTGCGATACTGTTTTCTGCGACTGACATCTCAGGCGA
TGGCAAGTGCGTCTTGTGCGACGCTCACCTCCCCTCGCTCGTTGCTCCGC
AAACCAATCTGGCTGCTGTGACTGCTGTGACTGTGACTGACACCTCAGGC
GATGGCAAGTGCGTGGTGTGCGACTCTTACGTGCGCCCCTGCACTCTAGT
CCGCATCTGCGACGAGTGCAACTACGGCTCCTTCGAGGTGGGTAGTAATG
TTGTTCGGCCTGTCATACCGGCATGACACCGAAAATGACACCAGGACCGT
AGCATCTTGTGTCACGACTCTTGCTTTATGGCATGGTTGTCTCGGGTATG
TAGATCTGTTCCAAGAACAATACTCCAGCTTTCTTGCCTCAGCCCTCGCT
GACTGGTCCCAGATGATATTTCCAGTCGCTCAACCTTTTCAAGGCAGAAC
CCTGCCGTGACCAGTCGCTTCTCGAACTTTTCTTGCTCTTCTTCTCTCCT
CTCAGGGACGGTGCACGATCTGCGGCGGGCCCGGCATCTCGGACGCCTAC
TACTGCCGCGAGTGCACCCAGCAGGAGAAGGATCGAGACGGGTGCCCCAA
GATCGTTAACCTGGGCAGCTCTAAGACCGACCTCTTCTACGAGAGAAAGA
AGTACGGCTTCAAGAAGAGATGATGCTGGTGGCCTGCGCCACGACGACAT
GATTGGCCAGATCGACCAATCAGATCAGTCGTTGGGGGCGCCGGCCGGGG
AGGATGAGGAGGAAATAATCTACATTTTGGCAATGGGGCGCTTGTGTGTT
GCCCCGTTACTGCCAAGTGTTACGGGATGGAAAGGAAGCAAGGAGTAGTC
AAGTGTTCCATGAAAAAAAAATGCATGGCTTTGTATTGTATGGCACGGCA
TAGTTGCAAGCAGCGGTGGTCGAGGGAGACGGTGATACACCGCTTATTTC
AATAACTGTGGTGTTTCGTGGACATGCGGGACTTCAAATGGGAGAAGGAA
AACTAGGCAGGAAGGAAAAAGAAACAAACCGAATATTTTTCCTCATCGTT
GTATACCTGGGTAGGAGGAGGGTGGGTGTAGGTGGAAGTGCATGCGTGTG
CGTCGCTCTTAGGCAACCAGCGGATAGGAGGCAGCTACTTGCAGATTGGC
GAGGGAAACTCTGTGGTTGGGTTCATTTCACGACAACGATGCCGTTGTCT
GCAGGCTGCAATGCGACAGCCTGTGTTCGCTTGCTGGCGGGACCGCATCG
TGCGCACCAATGCACCTAGTTCTCGCACCTAGTTCTCGGTCATGTAGGAC
AGCATTTTTTTGCTCGGTGTGCGTGGCTGTAGCTTGCCAACACACCACCC
AGAGGAGATGGCACGATGGACATCAATATTAAGCATGGATTTCGCGAATC
AAGAGAGAGCGCTGTGTTTTTCGGTTGAAAGATGGACCGTGATTCAAATC
CACGCCTGAAAAGTAGTCGAGTTCGAGTTCGATTTGGACGTGCGTCGTAT
TGTGCACGTGTCACGACCCGGTACTGTAGCGGCTAGTGGCTACGACTGCC
CTCAGGCGCTTGTGCTCCGTGGGCAACCGATCTGTGTATGCCTTGTGTCT
TGATGGGTTTTCGACGACAAAGATTGTCCGTGCCGATGCATACAATATCT
TTCCGACGACGCGACCCAGCTTACTTTCTCTTTCTACGAGTGATTGCTGG
TAACCCACATTCTTCCTTCACTGTTGCGAAGGTGGTGAGCACTACTCTGC
TGTTGTTGCGTTGGCTCTGCAGTGTGGCGGTCTGCTCCTCACCGACTGGT
TGTTCTTCGGTGTGTAATGTCATATCATGCATGTCACACGACTCCCGCTC
GATGCATTTTTGCACAACGCCGTGTGTGCGTTACTTCCAAG
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8245:2489..5579-

>mRNA_E_fasciculatus_S2_contig8245.16392.1 ID=mRNA_E_fasciculatus_S2_contig8245.16392.1|Name=mRNA_E_fasciculatus_S2_contig8245.16392.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=471bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8245:2489..5579- (Ectocarpus fasciculatus EfasUO2)
ATGTGTATGTACCCTCAGCCTGCAGGATCCCTCTACTTGCTCGTGCCTTC
TCCTCTCCGTCACTTACTTACCCCGCCTGCCTTCCTCGGCACGACCTACT
GCTGTACCTGTTTTCCCGCGTCCCTCGATCTTGGTGATATCCATCGAATC
GAATCGGTTCTGCGCCACCACGCTGCAATCATCCCGGCAGCCATCGGCCG
GCTGTGCGAGAAATGCGATGGCAAGTGCGTGGTGTGCGACTCTTACGTGC
GCCCCTGCACTCTAGTCCGCATCTGCGACGAGTGCAACTACGGCTCCTTC
GAGGGACGGTGCACGATCTGCGGCGGGCCCGGCATCTCGGACGCCTACTA
CTGCCGCGAGTGCACCCAGCAGGAGAAGGATCGAGACGGGTGCCCCAAGA
TCGTTAACCTGGGCAGCTCTAAGACCGACCTCTTCTACGAGAGAAAGAAG
TACGGCTTCAAGAAGAGATGA
back to top