prot_E_fasciculatus_S2_contig824.16387.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E_fasciculatus_S2_contig824.16387.1
Unique Name	prot_E_fasciculatus_S2_contig824.16387.1
Type	polypeptide
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length	294

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs. uniprot
Match: A0A6H5KLI3_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLI3_9PHAE)

HSP 1 Score: 243 bits (620), Expect = 2.510e-76
Identity = 206/247 (83.40%), Postives = 207/247 (83.81%), Query Frame = 0

Query:    1 MSGRRDGTFFGDPGMRGNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEASGGYGXXXXXXXXXXXXXXXXXXXXXXXRYDRRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHRRRRSRSASPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AAKRSSRHRDGSEEGXXXXGHSKRGRD 245
            MSGRRDGTFFGDPGMRGNGPPNIEGM+TLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEASGGYG     XXXXXXXXXXXXX     RYDRRD         XXXXXXXXXXXXXXX            SASPR  XXXXXXXXXXXX   XXXXXXXXXXXXXXXX  AAKRSSRHRDGSEE XXXX HSKRGRD
Sbjct:    1 MSGRRDGTFFGDPGMRGNGPPNIEGMITLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEASGGYGGGGGYXXXXXXXXXXXXXG----RYDRRDDYRHSSRRSXXXXXXXXXXXXXXX------------SASPRREXXXXXXXXXXXXPLYXXXXXXXXXXXXXXXXSPAAKRSSRHRDGSEEXXXXXXHSKRGRD 231

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BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs. uniprot
Match: A0A6H5KI74_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI74_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.580e-40
Identity = 73/107 (68.22%), Postives = 89/107 (83.18%), Query Frame = 0

Query:   11 GDPGMRGNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEA--SGGYG 115
            G    RG+GPPNI+GMVTLKVDN+ +  S ++LR +FE  G+LGDVY+PRD+RTGEPRGFAFVR++D+RDADDA+DR+DG  F GRELRIQYA+KRRP    SGGYG
Sbjct:    7 GGSDQRGSGPPNIDGMVTLKVDNIAFTCSPEELREVFEGCGKLGDVYIPRDMRTGEPRGFAFVRYLDKRDADDAVDRLDGTRFNGRELRIQYARKRRPGGGGSGGYG 113

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BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs. uniprot
Match: A0A6S7FVA8_PARCT (Serine arginine-rich splicing factor 2 n=2 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7FVA8_PARCT)

HSP 1 Score: 130 bits (327), Expect = 2.090e-33
Identity = 57/95 (60.00%), Postives = 78/95 (82.11%), Query Frame = 0

Query:   16 RGNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEA 110
            RG GPPNIEGM +LKVDN+ Y +++DDL+++F  YG++GDVY+PRD RT + RGFAFVRF ++RDA+DA+DR+DG    GRE+R+Q AK  RP++
Sbjct:    5 RGRGPPNIEGMTSLKVDNLTYRTTVDDLKKVFRAYGDVGDVYIPRDARTNQSRGFAFVRFFERRDAEDAMDRVDGSVLDGREIRVQNAKYGRPQS 99

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BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs. uniprot
Match: A0A835ZAC4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAC4_9STRA)

HSP 1 Score: 124 bits (310), Expect = 4.840e-32
Identity = 53/90 (58.89%), Postives = 75/90 (83.33%), Query Frame = 0

Query:   20 PPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPE 109
            PP+I GM+TLKVDN+ + ++ D++RR+F+KYGE+GDVY+PRD  TG+PRGFAFVR++D  DA++A+  MDG+   GR LRIQ+A +RRP+
Sbjct:    8 PPDISGMITLKVDNITFRTTADEVRRVFDKYGEVGDVYIPRDKATGDPRGFAFVRYLDNHDAEEALTAMDGKELDGRTLRIQFAMQRRPD 97

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BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs. uniprot
Match: V3ZXL2_LOTGI (RRM domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZXL2_LOTGI)

HSP 1 Score: 125 bits (314), Expect = 4.950e-32
Identity = 59/99 (59.60%), Postives = 76/99 (76.77%), Query Frame = 0

Query:   16 RGNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEASGGY 114
            RGNGPP+ +GMV+LKVDN+ Y +  DDL+R FEKYG++GD+Y+PRD  T E RGFAFVRF D+RDA+DA+D MDG    GR+LR+Q A+  RP    G+
Sbjct:    2 RGNGPPSTDGMVSLKVDNLTYRTRPDDLKRAFEKYGDVGDIYIPRDRITKESRGFAFVRFFDKRDAEDAMDSMDGAMMDGRDLRVQMARYGRPTNQRGH 100

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BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs. uniprot
Match: T1J1U9_STRMM (RRM domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1J1U9_STRMM)

HSP 1 Score: 127 bits (318), Expect = 5.600e-32
Identity = 60/92 (65.22%), Postives = 74/92 (80.43%), Query Frame = 0

Query:   17 GNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRP 108
            G GPPNIEGM +LKVDN+ Y ++ +DLRR FEKYGE+GDVY+PRD  T E RGFAFVRF D+RDA+DA++ MDG+   GRELR+Q A+  RP
Sbjct:    4 GRGPPNIEGMTSLKVDNLTYRTTPEDLRRAFEKYGEVGDVYIPRDRFTRESRGFAFVRFYDKRDAEDALEAMDGQMLDGRELRVQMARYGRP 95

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BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs. uniprot
Match: UPI001B88AFA6 (serine/arginine-rich splicing factor 2-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88AFA6)

HSP 1 Score: 124 bits (312), Expect = 2.640e-31
Identity = 59/97 (60.82%), Postives = 76/97 (78.35%), Query Frame = 0

Query:   17 GNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEASGG 113
            G GPPN EGM++LKVDN+ Y ++ ++L+R FEKYG++GDVY+PRD  T E RGFAFVRF D+RDA+DA+D MDG  F GRELR+Q A+  RP+   G
Sbjct:    4 GRGPPNSEGMISLKVDNLTYRTTPENLKRAFEKYGDVGDVYIPRDRFTRESRGFAFVRFYDKRDAEDAMDSMDGAIFDGRELRVQTARYGRPDTRRG 100

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BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs. uniprot
Match: E9HGN9_DAPPU (RRM domain-containing protein n=12 Tax=Daphnia TaxID=6668 RepID=E9HGN9_DAPPU)

HSP 1 Score: 121 bits (304), Expect = 3.900e-31
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 0

Query:   15 MRGNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPE 109
            M G GPP IEGM +LKVDN+ Y ++ +DLRR+FEKYG++GDVY+P+D  + E RGFAFVRF D+RD +DA+  MDG    GRELR+Q A+  RP+
Sbjct:    1 MSGRGPPRIEGMTSLKVDNLTYRTTCEDLRRVFEKYGDVGDVYIPKDRFSRESRGFAFVRFYDRRDGEDAMHAMDGRMMDGRELRVQLARYGRPD 95

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BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs. uniprot
Match: A0A3Q0J8V1_DIACI (serine/arginine-rich splicing factor 2 n=2 Tax=Psylloidea TaxID=33375 RepID=A0A3Q0J8V1_DIACI)

HSP 1 Score: 124 bits (310), Expect = 4.810e-31
Identity = 59/95 (62.11%), Postives = 74/95 (77.89%), Query Frame = 0

Query:   17 GNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEAS 111
            G  PP IEGMV+LKVDN+ Y ++ DDLRR+FE+ GE+GD+Y+PRD  T E RGFAFVRF D+RDA+DA+D MDG    GRELR+Q A+  RP +S
Sbjct:    4 GRPPPRIEGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFFDKRDAEDALDAMDGRMLDGRELRVQMARYGRPPSS 98

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BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs. uniprot
Match: UPI000C254D37 (serine/arginine-rich splicing factor 2-like n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C254D37)

HSP 1 Score: 123 bits (308), Expect = 4.840e-31
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 0

Query:   17 GNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKYGELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRIQYAKKRRPEA 110
            G  PP IEGM++LKVDN+ Y +S++DLRR FE+ GE+GD+Y+PRD  T E RGFAFVRF D+RDA+DA+D MDG    GRELR+Q A+  RP +
Sbjct:    5 GRAPPRIEGMISLKVDNLTYRTSVEDLRRAFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALDAMDGRMLDGRELRVQMARYGRPSS 98

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs. uniprot

BLAST of mRNA_E_fasciculatus_S2_contig824.16387.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KLI3_9PHAE	2.510e-76	83.40	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A6H5KI74_9PHAE	1.580e-40	68.22	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6S7FVA8_PARCT	2.090e-33	60.00	Serine arginine-rich splicing factor 2 n=2 Tax=Alc...	[more]
A0A835ZAC4_9STRA	4.840e-32	58.89	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
V3ZXL2_LOTGI	4.950e-32	59.60	RRM domain-containing protein (Fragment) n=1 Tax=L...	[more]
T1J1U9_STRMM	5.600e-32	65.22	RRM domain-containing protein n=1 Tax=Strigamia ma...	[more]
UPI001B88AFA6	2.640e-31	60.82	serine/arginine-rich splicing factor 2-like isofor...	[more]
E9HGN9_DAPPU	3.900e-31	58.95	RRM domain-containing protein n=12 Tax=Daphnia Tax...	[more]
A0A3Q0J8V1_DIACI	4.810e-31	62.11	serine/arginine-rich splicing factor 2 n=2 Tax=Psy...	[more]
UPI000C254D37	4.840e-31	60.64	serine/arginine-rich splicing factor 2-like n=1 Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 28..101 e-value: 5.2E-23 score: 92.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 30..99 e-value: 4.7E-19 score: 68.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 27..105 score: 19.945
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 13..111 e-value: 2.9E-25 score: 91.1
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 18..227
IPR034893	Serine/arginine-rich splicing factor 2-like	PANTHER	PTHR23147:SF145	SERINE/ARGININE-RICH SPLICING FACTOR 2	coord: 18..227
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 22..137

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig824	contig	E_fasciculatus_S2_contig824:15332..20403 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig824.16387.1	mRNA_E_fasciculatus_S2_contig824.16387.1	Ectocarpus fasciculatus EfasUO2	mRNA	E_fasciculatus_S2_contig824 12790..20411 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E_fasciculatus_S2_contig824.16387.1 ID=prot_E_fasciculatus_S2_contig824.16387.1|Name=mRNA_E_fasciculatus_S2_contig824.16387.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=294bp
MSGRRDGTFFGDPGMRGNGPPNIEGMVTLKVDNVPYNSSIDDLRRIFEKY
GELGDVYMPRDLRTGEPRGFAFVRFMDQRDADDAIDRMDGEFFAGRELRI
QYAKKRRPEASGGYGGGGGGGAYGYGGGGGGGYGGGGGRYDRRDDRRDDR
RDDRRDDYRRSSRRSRSRSRSRDHRRRRSRSASPRRERSRDRRRSRSRSP
PPSRRRSRSRSRSRSRSPAAKRSSRHRDGSEEGGGGGGHSKRGRDRRGSS
ADGGRDGEADKRNGHRDSSPPMNGGGGQSNSRRNSDAGSASPR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR034893	SRSF2-like
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom