mRNA_E_fasciculatus_S2_contig824.16384.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig824.16384.1 vs.
Match: Similar (to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM65_ECTSI) HSP 1 Score: 189 bits (480), Expect = 7.130e-53 Identity = 99/139 (71.22%), Postives = 107/139 (76.98%), Query Frame = 2
Query: 770 SLGRGCLCKAGADIEKTYHGDPPLCMSTFSTRYSAAMPALLNTGANLHAKCRNTGRNALHIACHVVNPDAADLLLRWGTDETAVDRNGATPAAVIRRTDEAPEEH-PTILRLVKLLEFADQDRTWRRRGLLVMCRAHPD 1183
SLG GCL + G PPLC+STFS Y AAM ALL GA+LHAKC + G ALH ACHVVNPDAADLLLRWG DETAVD NGAT +AVI R DEAPEE+ P ILRL KLL+FADQDRTWRRRGLLVMCRAHP+
Sbjct: 224 SLGWGCLWLEPTS-KTCIAGRPPLCVSTFSISYFAAMLALLKLGADLHAKCPHNGMTALHTACHVVNPDAADLLLRWGADETAVDWNGATTSAVIPRIDEAPEENGPAILRLTKLLKFADQDRTWRRRGLLVMCRAHPE 361
BLAST of mRNA_E_fasciculatus_S2_contig824.16384.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNA2_9PHAE) HSP 1 Score: 154 bits (389), Expect = 1.540e-41 Identity = 77/103 (74.76%), Postives = 82/103 (79.61%), Query Frame = 2
Query: 878 MPALLNTGANLHAKCRNTGRNALHIACHVVNPDAADLLLRWGTDETAVDRNGATPAAVIRRTDEAPEEH-PTILRLVKLLEFADQDRTWRRRGLLVMCRAHPD 1183
M A+L GANLHAKC + G ALH ACHVVNPDAADLLL WG DETA D N A +AVI R DE PEE+ P ILRL KLLEFAD+DRTWRRRGLLVMCRAHPD
Sbjct: 1 MLAVLKLGANLHAKCPHNGMTALHTACHVVNPDAADLLLTWGADETAADWNDAAVSAVIPRIDEPPEENRPAILRLAKLLEFADKDRTWRRRGLLVMCRAHPD 103
BLAST of mRNA_E_fasciculatus_S2_contig824.16384.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM68_9PHAE) HSP 1 Score: 149 bits (376), Expect = 3.020e-39 Identity = 120/170 (70.59%), Postives = 128/170 (75.29%), Query Frame = 3
Query: 291 TLMHAGAEGGSEQVVSMLMRAGAGKDINGQAPRSGLTPLHLAVMGGMLAAAKVLMLAGADVNKIDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYPIHLNGXXXXXLVSRRGEDGVLRSLLHKGANANRHGRAGMTPLILALEANHISTVNILLAGGASARL 800
TLMHAGAEGGSEQVVSMLMRA AGK IN QAP S L PLHLAV GG LAA KVL+L GADVNK+DA XXXXXXXXXXXXXXXXXXXXXXXXXXX +YPI +RR ED VLRSLLHKGA +R G AG TPL AL+ HISTV++LLAGGAS L
Sbjct: 56 TLMHAGAEGGSEQVVSMLMRASAGKYINDQAPLSVLAPLHLAVSGGKLAATKVLVLPGADVNKLDAGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXQLRNGNYPI----------AARREEDEVLRSLLHKGAKVDRRGFAGNTPLCNALDVGHISTVHVLLAGGASVSL 215
BLAST of mRNA_E_fasciculatus_S2_contig824.16384.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V4_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 4.680e-21 Identity = 56/107 (52.34%), Postives = 66/107 (61.68%), Query Frame = 2
Query: 878 MPALLNTGANLHAKCRNTGRNALHIACHVVNPDAADLLLRWGTDETAVDRNGATPAAVI--RRTDEAP---EEHPTILRLVKLLEFADQDRTWRRRGLLVMCRAHPD 1183
M LL GA++H + +TG +LH+AC+ V P+A DLLLRWG DET VD G TP + DEA E T RL KLL A QDR+WRRRG LVMCR H D
Sbjct: 1 MLTLLQLGADVHVR-DSTGATSLHMACYDVEPEAVDLLLRWGADETVVDDEGHTPYSYHFPAGADEAEWDEENRRTYKRLSKLLTHAPQDRSWRRRGFLVMCRTHQD 106
BLAST of mRNA_E_fasciculatus_S2_contig824.16384.1 vs.
Match: Pc16g06120 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP2_ECTSI) HSP 1 Score: 96.3 bits (238), Expect = 1.030e-18 Identity = 63/173 (36.42%), Postives = 87/173 (50.29%), Query Frame = 3
Query: 291 TLMHAGAEGGSEQVVSMLMRAGAGKDINGQAPRSGLTPLHLAVMGGMLAAAKVLMLAGADVNKID--AEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYPIHLNGXXXXXLVSRRGEDGVLRSLLHKGANANRHGRAGMTPLILALEANHISTVNILLAGGASARLG 803
TL+HA VV+ L+RAGAG+D+ + P +G TPLH+AVM G AAA+VL+LAGADVN +D + D PIH+ + G V+ +L H A+ + GMTP+ LA+E +H+STV +LLA GA A+ G
Sbjct: 76 TLLHAAXXXXXXXVVTALIRAGAGEDMEAKTPGTGGTPLHVAVMRGQEAAARVLVLAGADVNAVDHNTDTPLHLAIGVLGVDARIAQDLLLSGANPKARGFAHDCPIHV--------AASHGRHDVVHALAHTRADLDALDGKGMTPISLAVEGDHVSTVKVLLAAGADAKCG 240
BLAST of mRNA_E_fasciculatus_S2_contig824.16384.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 8.740e-16 Identity = 60/135 (44.44%), Postives = 76/135 (56.30%), Query Frame = 2
Query: 788 LCKAGADIE-KTYHGDPPLCMSTFSTRYSAAMPALLNTGANLHAKCRNTGRNALHIACHVVNPDAADLLLRWGTDETAVDRNGATPAAVI--RRTDEAPEEHPTILRLVKLLEFADQDRTWRRRGLLVMCRAHPD 1183
L KAG IE ++ G PL + F A M ALL GAN+++K G + L AC + DAADLLLRWG DETAVD + T +++ R A + R+ +LL A QDR WRRRG LV C +HPD
Sbjct: 111 LFKAGVYIEGRSPKGRTPLQNAAFCGSCEA-MLALLQLGANVNSKNTINGLSPLCSACREGHHDAADLLLRWGADETAVDSDEKTIVSMMTHRIFRAAVASRQRLERVSELLARAPQDRAWRRRGFLVPCLSHPD 244
BLAST of mRNA_E_fasciculatus_S2_contig824.16384.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI9_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 1.800e-14 Identity = 54/140 (38.57%), Postives = 75/140 (53.57%), Query Frame = 2
Query: 788 LCKAGADIEKTYHGDP---PLCMSTFSTRYS-AAMPALLNTGANLHAKCRNTGRNALHIACHVVNPDAADLLLRWGTDETAVDRNGATPAAVIRRT-----DEAPEEHPTILRLVKLLEFADQDRTWRRRGLLVMCRAHP 1180
L AGAD+ +T + D PL ++ + S + ALL G+N+HA+ + LHIAC + +LLLRWG DE + G TPA VIR D+ E R+ ++LE A DR+WRRRG LV+ R+ P
Sbjct: 141 LLGAGADVNETNNNDSCFTPLHIAVNGRKVSDGTVRALLEGGSNIHARAL-LDQTPLHIACKHASVTGVELLLRWGADEKLTNNVGKTPADVIRPRRQNDFDDEEEREADNQRIRRMLEHAPADRSWRRRGWLVLSRSCP 279
BLAST of mRNA_E_fasciculatus_S2_contig824.16384.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW6_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 1.990e-14 Identity = 59/146 (40.41%), Postives = 79/146 (54.11%), Query Frame = 2
Query: 782 GCLCKAGADIEKT----------YHGDPPLCMSTFSTRYSAAMPALLNTGANLHAKCRNTGRNALHIACHV--VNPD-AADLLLRWGTDETAVDRNGATPAAVIRRTDEAPEEHPTILRLVKLLEFADQDRTWRRRGLLVMCRAHP 1180
G L +AGAD+E + G PL ++ + + A+M LL GA+++A+ N G LH+ C +NPD ADLLLRWG DETA+D G TP A I + + L +L+ A DR WRRRG L+MCRA P
Sbjct: 301 GALLEAGADLEARSGEVFRDSHRFTGLTPLHVAAYHQK--ASMAELLRKGADVNAESDN-GLTPLHMLCMKPRLNPDDTADLLLRWGADETAIDNEGYTPKARIVGSSNGSQA------LRHMLDKAPVDRAWRRRGTLIMCRALP 437
BLAST of mRNA_E_fasciculatus_S2_contig824.16384.1 vs.
Match: Ankyrin (repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G292_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 5.210e-14 Identity = 60/135 (44.44%), Postives = 69/135 (51.11%), Query Frame = 2
Query: 788 LCKAGADIEKT-YHGDPPLCMSTFSTRYSAAMPALLNTGANLHAKCRNTGRNALHIACHVVNPDAADLLLRWGTDETAVDRNGATPAA-VIRRTDEAPEEH-PTILRLVKLLEFADQDRTWRRRGLLVMCRAHPD 1183
L +AGADIE G PL + S Y+A AC + DAADLLLRWG DETAV+ G T + VIRR EA E P + R+ KLL A QDR WRRRG LV+CRAH D
Sbjct: 230 LFEAGADIEGPGIRGRTPLRHAARSGSYAAIXXXXXXXXXXXXXXXXXXXXXXC--ACFFCHHDAADLLLRWGADETAVNLEGETVVSMVIRRIAEALETRCPPLERVSKLLARAPQDRAWRRRGFLVLCRAHRD 362
BLAST of mRNA_E_fasciculatus_S2_contig824.16384.1 vs.
Match: Similar (to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A3_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 6.160e-14 Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 142 CDRATPQEWNEWLRVPLKHAAGTGNATLAEKLLEVGANAKAGWKGCDGRIL 294
CDRATP++W EWLR PL+HAAGTGN L +KLL GAN AGW+GC G+ L
Sbjct: 23 CDRATPEQWAEWLRAPLEHAAGTGNRDLVDKLLGAGANVGAGWRGCHGKTL 73 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig824.16384.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig824.16384.1 >prot_E_fasciculatus_S2_contig824.16384.1 ID=prot_E_fasciculatus_S2_contig824.16384.1|Name=mRNA_E_fasciculatus_S2_contig824.16384.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=243bp MERVAAGPSQARGRHRKRYPGGEAAGGWGEREGRVEGLRWAYTLMHAGAEback to top mRNA from alignment at E_fasciculatus_S2_contig824:104..1383+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig824.16384.1 ID=mRNA_E_fasciculatus_S2_contig824.16384.1|Name=mRNA_E_fasciculatus_S2_contig824.16384.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1280bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig824:104..1383+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig824:104..1383+ >mRNA_E_fasciculatus_S2_contig824.16384.1 ID=mRNA_E_fasciculatus_S2_contig824.16384.1|Name=mRNA_E_fasciculatus_S2_contig824.16384.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=729bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig824:104..1383+ (Ectocarpus fasciculatus EfasUO2)back to top |