mRNA_E_fasciculatus_S2_contig8237.16383.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8237.16383.1
Unique NamemRNA_E_fasciculatus_S2_contig8237.16383.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8237.16383.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC6_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 8.520e-27
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 2 
Query:    2 STVEVPEATKRLLEQAAKIRAEAEQMEVNFRKEQGIEDFKPSGAKVSSAGDTARAAAKADPS 187
            ST EVPEATKRLLEQAAKIRAEAEQMEVNFRKEQGIEDFKPSGAKVSSAGDTARAAAKADPS
Sbjct:   68 STAEVPEATKRLLEQAAKIRAEAEQMEVNFRKEQGIEDFKPSGAKVSSAGDTARAAAKADPS 129
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8237.16383.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized8.520e-2798.39protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8237contigE_fasciculatus_S2_contig8237:1235..2330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size190
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842484.1617737-CDS-E_fasciculatus_S2_contig8237:1235..13571696842484.1617737-CDS-E_fasciculatus_S2_contig8237:1235..1357Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8237 1236..1357 -
1696842484.1724787-CDS-E_fasciculatus_S2_contig8237:2263..23301696842484.1724787-CDS-E_fasciculatus_S2_contig8237:2263..2330Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8237 2264..2330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8237.16383.1prot_E_fasciculatus_S2_contig8237.16383.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8237 1236..2330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8237.16383.1

>prot_E_fasciculatus_S2_contig8237.16383.1 ID=prot_E_fasciculatus_S2_contig8237.16383.1|Name=mRNA_E_fasciculatus_S2_contig8237.16383.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=63bp
VDGGGARGDEASARAGRQDPRRGGADGGQLPQGAGHRGLQAVGGQGQLGG
GHREGGGQGRPFQ
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mRNA from alignment at E_fasciculatus_S2_contig8237:1235..2330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8237.16383.1 ID=mRNA_E_fasciculatus_S2_contig8237.16383.1|Name=mRNA_E_fasciculatus_S2_contig8237.16383.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1096bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8237:1235..2330- (Ectocarpus fasciculatus EfasUO2)
GTCGACGGTGGAGGTGCCCGAGGCGACGAAGCGTCTGCTCGAGCAGGCCG
CCAAGATCCGCGCCGAGGTGAGAGGGGCGCTGGTTCGGTTTTATCGCCAC
TTGCTTCATTGTTCTACATTGAAGTTGTTTGACCGACAAGACCGCTGTTT
TGGTCGTTCTGCAGTACACCGGGCTTTTGTAGTACTGTCGGCGAGGTAAA
AGAGAGAGAGAGCGCACAGCCTCTGTTTAGTGCACAGCAGTACCGGGCTC
TAAGTAGCGTCGGTGGGTAGGTACCATGCCGTAAAAACGGGGCAGAGAGA
TGGCACCGCTATGACCGACTTTGAAGGCTCGACTTGCTCCACAAACCAAA
GGGTTGCGGAAAGCGCCCGACAGTTGTACGACAAGCCCTCGACGAACTTT
CGGTGTTGGCAAATAGTTGGTTGTTGAGCGATCGAGTTTGAAAGTCGGTG
CTAAGGAGGGGTGCCATCTCTCCACGTCTTACGGGGTAGTCCGGCGTAGT
GCCGCTGAAATCGCATGAAACGGTTGGAATATTGTGGGTTGTGTCATTCT
CTCTGAGTAGTTGGGCAGCCATTCTGTATAGTTCTAGGGGTAAGTAGATA
TGTGAAATGTTTGTTTGTTCATGTTGCAATCTTGTACCCTGGAGCTGGAT
GTGTGTGAGGCTGTCTACCGGCCACGACGGAATCCATGCTGAGAACAAGA
CATATTTGTAGGCAGGATCGGGAAAATAAGCGCAATATGAAGAGGGAAGA
GGGCCTGGGTAAGGCCGGGACGTGTGATGCATGGTTCCGAAACAACTGTG
GAGGCCACGCCTATAAAAACAAACAATACAAATAACGACATCAGTAGCAG
CAGCATCAACGACACCGACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAAATCACCGCCCTCGTCCTCTTCCGATTGCATC
CTCGAACCCACCGCCGGCCACAGGCGGAGCAGATGGAGGTCAACTTCCGC
AAGGAGCAGGGCATCGAGGACTTCAAGCCGTCGGGGGCCAAGGTCAGCTC
GGCGGGGGACACCGCGAGGGCGGCGGCCAAGGCCGACCCTTCCAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8237:1235..2330-

>mRNA_E_fasciculatus_S2_contig8237.16383.1 ID=mRNA_E_fasciculatus_S2_contig8237.16383.1|Name=mRNA_E_fasciculatus_S2_contig8237.16383.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=189bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8237:1235..2330- (Ectocarpus fasciculatus EfasUO2)
GTCGACGGTGGAGGTGCCCGAGGCGACGAAGCGTCTGCTCGAGCAGGCCG
CCAAGATCCGCGCCGAGGCGGAGCAGATGGAGGTCAACTTCCGCAAGGAG
CAGGGCATCGAGGACTTCAAGCCGTCGGGGGCCAAGGTCAGCTCGGCGGG
GGACACCGCGAGGGCGGCGGCCAAGGCCGACCCTTCCAA
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