mRNA_E_fasciculatus_S2_contig8232.16380.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8232.16380.1
Unique NamemRNA_E_fasciculatus_S2_contig8232.16380.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8232.16380.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMC5_ECTSI)

HSP 1 Score: 566 bits (1460), Expect = 5.670e-184
Identity = 394/497 (79.28%), Postives = 401/497 (80.68%), Query Frame = 1 
Query:    1 GSFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRAPEDARAAALKAAEKRQRQQGVMSGGGQRLGGVSGSXXXXXXXXXXXXXXXXXXXXXXXXGCGGHHGCTAGEKAGDNGDDDDNHWECGLCTLFNSLTVNACDACGKERPATAPGTSVCDHGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGRLQKKSAVGARTASHGRSVGAPLGXXXXXXXXXXXXXXXXLPSAGRTWTCRSCPFSFPNASERRTCESCGAARLLPADAGSXXXXXXXXXXDRAATAVGGTAGGRSSWDAELLPSWTCEACTVVNPGMFLGCSVCGAERPAEKEAAGGGVGVGGGDDLATLSSEWTAEVGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVGGETVGIGGRTRNDPGMESWGSAQPAGEARVCRLCTLRNPPEASDCAACGIPLAESEAAVA 1491
            GSFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRAPEDARAAALKA               QRLGGVSGSXXXXXXXXXXXXXXXXXXXXX   GCGGHHGCTAGEK GDN DD D HWECGLCTLFNSLTVNACDACGKER A  PG SV D GAG      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGRLQKKS  GARTAS GRSVGAP GXXXXXXXXXXX     LPSAGRTWTCRSCPFSFPNASERRTCESCGAARLLPADAGS XXXXXXXXX   ATA+ GT GG +SWDAELLPSWTC+ACTVVNPGMFLGCSVCGAERPAE EA           +LATLSSEWTAEVGR                             A   ETVGIGGR R+DPGMESWGSAQPAGEAR+CRLCTLRNPPEASDC ACGIPLA+SEAAVA
Sbjct:   82 GSFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRAPEDARAAALKAXXXXXXXXXXXXXXXQRLGGVSGSXXXXXXXXXXXXXXXXXXXXXVSQGCGGHHGCTAGEKTGDNADDGD-HWECGLCTLFNSLTVNACDACGKERSANPPGNSVRDRGAGSSTGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGRLQKKSTAGARTASDGRSVGAPRGXXXXXXXXXXXG----LPSAGRTWTCRSCPFSFPNASERRTCESCGAARLLPADAGSGXXXXXXXXX---ATAIRGTTGGHTSWDAELLPSWTCDACTVVNPGMFLGCSVCGAERPAE-EAXXXXXXXXXXXNLATLSSEWTAEVGRGGGVTAGGWMAAQGSSGGTDCSVGVG--TADVRETVGIGGRIRDDPGMESWGSAQPAGEARMCRLCTLRNPPEASDCEACGIPLADSEAAVA 567
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BLAST of mRNA_E_fasciculatus_S2_contig8232.16380.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X1_9PHAE)

HSP 1 Score: 551 bits (1419), Expect = 4.430e-177
Identity = 354/501 (70.66%), Postives = 363/501 (72.46%), Query Frame = 1 
Query:    1 GSFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRAPEDARAAALKAAEKRQRQQGVMSGGGQRLGGVSGSXXXXXXXXXXXXXXXXXXXXXXXXGCGGHHGCTAGEKAGDNGDDDDNHWECGLCTLFNSLTVNACDACGKERPATAPGTSVCDHGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPGRLQKKSAVGARTASHGRSVGAPLGXXXXXXXXXXXXXXXXLPSAGRTWTCRSCPFSFPNASERRTCESCGAARLLPADAGSXXXXXXXXXXDRAATAVGGTAGGRSSWDAELLPSWTCEACTVVNPGMFLGCSVCGAERPAEKEAAGGGVGVGGGDDL---ATLSSEWTAEVGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-AVGGETVGIGGRTRNDPGMESWGSAQPAGEARVCRLCTLRNPPEASDCAACGIPLAESEAAVA 1491
            GSFYPYEFI+GTMLHELVHNQIGPHSAKFYR+LDQLNDECDKL REGITGRNMPFAGDGQ LGGGRAP DARAAALKAAEKRQRQQG+M  GGQRLGGVSGS                        GC GHHGCTAG KA D+ DD D HWECGLCTLFNSLTVNACDACGKER AT  G SV   G           XXXXXXXXXXXX                     G GRLQ KS  GAR AS GRSVGAP G XXXXXXXXXXX    LPSAGRTWTCRSCPFSFPN SERRTCESCGAARLLPADAGS XXXXXXXXX  AATAVGGT GG +SW AELLPSWTCEACTVVNPGMFLGCSVCGAERPA++ A  G             ATLSSEWTAEVG XXXXXXXXXX                    A  GETVG GGRTR+DPGMES  SAQP GE RVCRLCTLRNPPEAS+C ACGIPLAESEAAVA
Sbjct:  127 GSFYPYEFIIGTMLHELVHNQIGPHSAKFYRVLDQLNDECDKLTREGITGRNMPFAGDGQPLGGGRAPNDARAAALKAAEKRQRQQGIMGSGGQRLGGVSGSSPSDAISAAQRAAAAAQWRHAVSQGCRGHHGCTAGVKADDDADDGD-HWECGLCTLFNSLTVNACDACGKERSATPAGKSVRGRGX----------XXXXXXXXXXXXVAGGTTTGRQKRPAPTTGAAAGAGRLQNKSTAGARMASDGRSVGAPRGGXXXXXXXXXXXR---LPSAGRTWTCRSCPFSFPNVSERRTCESCGAARLLPADAGSGXXXXXXXXX--AATAVGGTTGGHTSWGAELLPSWTCEACTVVNPGMFLGCSVCGAERPADEAAEAGXXXXXXXXXXXXXATLSSEWTAEVGXXXXXXXXXXXGWMAAQGSSGGTDCSVGVGGAAVGETVGFGGRTRDDPGMESCWSAQPTGETRVCRLCTLRNPPEASNCKACGIPLAESEAAVA 611
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BLAST of mRNA_E_fasciculatus_S2_contig8232.16380.1 vs.
Match: Uncharacterized (protein n=3 Tax=Ricinus communis TaxID=3988 RepID=B9SAJ5_RICCO)

HSP 1 Score: 104 bits (260), Expect = 1.900e-20
Identity = 71/203 (34.98%), Postives = 88/203 (43.35%), Query Frame = 1 
Query:    4 SFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGG-GRAP--EDARAAALKAAEKRQRQQGVMSGGGQRLGGVSGSXXXXXXXXXXXXXXXXXXXXXXXXGCGGHHGCT---------------------------AGEKAGDNGDDDDNHWECGLCTLFNSLTVNACDACGKER 522
             F+PYE +L TMLHEL HNQ GPH+A FY +LDQ+  EC++LI +GITG    F   G+ LGG  R P     R  AL AAE R R+  V+  G QR+GG                            G     G +                            G+  G    DD   W+C +CTL N   V  C+ACG ER
Sbjct:   82 DFFPYEQVLDTMLHELCHNQYGPHNADFYNLLDQIRKECEELIAKGITGTGQGFDLPGRCLGGFSRQPPLSSMRQTALAAAENRARRGAVLPSGPQRVGGDGNIKTALSPVQAAAMAAERRLHDDLWCGSKSLEGISDLKENVEASSKSNISITFEGVSSRTSPRGQTTGQKPVDDHPQWQCHMCTLLNQPLVLICEACGPER 284
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BLAST of mRNA_E_fasciculatus_S2_contig8232.16380.1 vs.
Match: DNA-dependent (metalloprotease WSS1-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A440BF)

HSP 1 Score: 102 bits (253), Expect = 1.660e-19
Identity = 71/201 (35.32%), Postives = 94/201 (46.77%), Query Frame = 1 
Query:    4 SFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGG-GRAPE--DARAAALKAAEKRQRQQGVMSGGGQRLGGVSGSXXXXXXXXXXXXXXXXXXXXXXXXGCGGHHGCT-----------AGEK----AGDNGD----------DDDNHWECGLCTLFNSLTVNACDACGKER 522
             F+PYE IL TMLHEL HN+ GPH+A+FY +LD++  EC++L+ +GI+G    F   G+ LGG  R P     R AAL AAE R R   ++  G QRLGG S                          G    +G T           +G +    + DNG           DD   W+C +CTL N      C+ACG +R
Sbjct:   81 DFFPYEQILDTMLHELCHNEHGPHNAQFYNLLDEIRKECEELMAKGISGTGQGFDLPGRRLGGFSRQPPLPSLRQAALAAAESRARHGALLPSGPQRLGGNSSIKSALSPVQAAAMAAERRLHDDIWCGSRSANGDTHNHDNTTLIGPSGRQGMSCSSDNGSLQSTMDRETADDGAKWQCNICTLLNESIALECEACGTQR 281
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BLAST of mRNA_E_fasciculatus_S2_contig8232.16380.1 vs.
Match: Uncharacterized (protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4DXC4_PHYPA)

HSP 1 Score: 100 bits (250), Expect = 7.430e-19
Identity = 53/103 (51.46%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    1 GSFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGG---GRAPEDARAAALKAAEKRQRQQGVMSGGGQRLGGVS 300
              F+PYE +LGT+LHELVHN  GPH AKFY +LD +  EC++L+ +GI+G    F   GQ LGG      P + RA AL AAEKR +    M  G QRLGG S
Sbjct:   53 NEFFPYESVLGTLLHELVHNDCGPHDAKFYGLLDVITKECEELMAKGISGTGQGFDARGQRLGGYTLNPPPTNMRAVALAAAEKRAKAASFMPSGPQRLGGDS 155
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BLAST of mRNA_E_fasciculatus_S2_contig8232.16380.1 vs.
Match: Uncharacterized (protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A6S7MWI1_LACSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.000e-18
Identity = 62/184 (33.70%), Postives = 84/184 (45.65%), Query Frame = 1 
Query:    4 SFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGG----GRAPEDARAAALKAAEKRQRQQGVMSGGGQRLGGVSGSXXXXXXXXXXXXXXXXXXXXXXXXGC-------GGHHGCTAGEKAGDNGDDDDNHWECGLCTLFNSLTVNACDACGKER 522
             F+PYE IL TMLHEL HNQ GPH+A FY +LD++  EC++L+ +GITG    F   G+ LGG     + P   R  AL AA+ R +   ++  G  RLGG S                                   G      +   +   G+   + W+CG CTL N   +  C+ACG  R
Sbjct:   81 DFFPYEQILDTMLHELCHNQYGPHNADFYNLLDEIRKECEELMAKGITGTGRGFDLPGRRLGGYFRQQQTPSSLRQKALSAAQNRAQMGTLLPSGPHRLGGDSSMKTALSPVQAAAMAAERRLHDDLWCASKSFQEPSGTSEASVSQNISSSEGEPKASSWQCGTCTLLNQPLLLTCEACGTPR 264
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BLAST of mRNA_E_fasciculatus_S2_contig8232.16380.1 vs.
Match: DNA-dependent (metalloprotease WSS1 isoform X2 n=2 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314Z6I9_PRUYE)

HSP 1 Score: 98.6 bits (244), Expect = 1.240e-18
Identity = 70/199 (35.18%), Postives = 90/199 (45.23%), Query Frame = 1 
Query:    4 SFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGG-GRAP--EDARAAALKAAEKRQRQQGVMSGGGQRLGGVSGSXXXXXXXXXXXXXXXXXXXXXXXXGCG---------GHHGCTAGEKA-----------------GDNGDDDDNHWECGLCTLFNSLTVNACDACG 513
             FYPYE IL TMLHEL HN+ GPH+A FY++LD++  EC++L+ +GITG    F   G+ LGG  R P     R  AL AAE R R+  +   G +RLGG S                          G           G+ G + G +A                 G +  DD   W+C +CTL N L    C ACG
Sbjct:   44 DFYPYEQILDTMLHELCHNEYGPHNADFYKLLDEIRRECEELMAKGITGTAQGFDLPGKRLGGFSRQPPLSSIRQTALAAAENRARRGALPPSGPRRLGGDSNIKAALSPIQAAAMAAERRLHDDLWCGSKSLEGGIEVQGNVGTSRGAEAFTVTNGISTQTSIESRSGQDKIDDQAKWKCNMCTLLNELLALRCSACG 242
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BLAST of mRNA_E_fasciculatus_S2_contig8232.16380.1 vs.
Match: WLM (domain-containing protein n=2 Tax=Setaria viridis TaxID=4556 RepID=A0A4U6UT38_SETVI)

HSP 1 Score: 97.8 bits (242), Expect = 1.730e-18
Identity = 63/180 (35.00%), Postives = 84/180 (46.67%), Query Frame = 1 
Query:    4 SFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGGGRA---PEDARAAALKAAEKRQRQQGVMSGGGQRLGGVSGSXXXXXXXXXXXXXXXXXXXXXXXXGCGGHHGCTAGEKAG-------------DNGDD-DDNHWECGLCTLFNSLTV 492
             F PYE +L TMLHEL HN  GPH A+FY++ D+L  EC++L+ +GITG    F G G+ +GG      P   R A L AA+KR R   ++  G ++LGG   +                         CG H+   +   +G               GD  DD+ WECG CTL N  T 
Sbjct:   82 DFIPYEEVLDTMLHELCHNDRGPHDAQFYKLWDELRKECEELVSKGITGTGQGFDGTGRRVGGFTIHPPPPSLRQATLAAAQKRARNGALLPSGPRKLGG--NNDIMSALSPAQAAAMAAEWRMHDDLWCGSHNQSESSTSSGIHTAARDGPSSFWTTGDAVDDSKWECGACTLLNQKTA 259
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BLAST of mRNA_E_fasciculatus_S2_contig8232.16380.1 vs.
Match: Uncharacterized (protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4DUZ6_PHYPA)

HSP 1 Score: 100 bits (250), Expect = 2.900e-18
Identity = 53/103 (51.46%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    1 GSFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGG---GRAPEDARAAALKAAEKRQRQQGVMSGGGQRLGGVS 300
              F+PYE +LGT+LHELVHN  GPH AKFY +LD +  EC++L+ +GI+G    F   GQ LGG      P + RA AL AAEKR +    M  G QRLGG S
Sbjct:   85 NEFFPYESVLGTLLHELVHNDCGPHDAKFYGLLDVITKECEELMAKGISGTGQGFDARGQRLGGYTLNPPPTNMRAVALAAAEKRAKAASFMPSGPQRLGGDS 187
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BLAST of mRNA_E_fasciculatus_S2_contig8232.16380.1 vs.
Match: Uncharacterized (protein n=3 Tax=Salvia TaxID=21880 RepID=A0A4D8YQM0_SALSN)

HSP 1 Score: 97.1 bits (240), Expect = 9.180e-18
Identity = 65/193 (33.68%), Postives = 87/193 (45.08%), Query Frame = 1 
Query:    4 SFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSLGG-GRAP--EDARAAALKAAEKRQRQQGVMSGGGQRLGGVSGSXXXXXXXXXXXXXXXXXXXXXXXXGCGG--HHGCTAG---------------EKAGDNGDDDDNHWECGLCTLFNSLTVNACDACGKER 522
             F+PY+ IL TMLHEL HN+ GPH+A FY +LD+L  EC++L+ +GITG    F   G+ LGG  R P     R  AL AAEKR R + ++  G +RLGG S                          G     H G +                 +        D++ W+C  CTL N      C+ACG  +
Sbjct:   95 DFFPYDHILNTMLHELCHNEHGPHNADFYNLLDELRKECEELMAKGITGTGQGFDLPGKRLGGYSRQPPLSSLRQQALAAAEKRSRNEALLPHGPKRLGGDSSIKAVLSPVQAAAMAAERRLHDDLWCGSKSLEHEGPSESPTSSLDVRTTRTSVLDSTSVQDQKDESSWQCDTCTLLNQQRALICEACGTPK 287
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8232.16380.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized5.670e-18479.28protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.430e-17770.66protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.900e-2034.98protein n=3 Tax=Ricinus communis TaxID=3988 RepID=... [more]
DNA-dependent1.660e-1935.32metalloprotease WSS1-like n=1 Tax=Prosopis alba Ta... [more]
Uncharacterized7.430e-1951.46protein n=1 Tax=Physcomitrium patens TaxID=3218 Re... [more]
Uncharacterized1.000e-1833.70protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A6S7MWI... [more]
DNA-dependent1.240e-1835.18metalloprotease WSS1 isoform X2 n=2 Tax=Prunus yed... [more]
WLM1.730e-1835.00domain-containing protein n=2 Tax=Setaria viridis ... [more]
Uncharacterized2.900e-1851.46protein n=4 Tax=Physcomitrium patens TaxID=3218 Re... [more]
Uncharacterized9.180e-1833.68protein n=3 Tax=Salvia TaxID=21880 RepID=A0A4D8YQM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8232contigE_fasciculatus_S2_contig8232:616..6356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score542.7
Seed ortholog evalue1.9e-151
Seed eggNOG ortholog2880.D7FMC5
Model size4095
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000724,GO:0000725,GO:0000731,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010224,GO:0010225,GO:0012505,GO:0016740,GO:0016787,GO:0016925,GO:0018130,GO:0018193,GO:0018205,GO:0019438,GO:0019538,GO:0019787,GO:0019789,GO:0019985,GO:0031967,GO:0031975,GO:0032182,GO:0032183,GO:0032446,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061659,GO:0061665,GO:0070011,GO:0070647,GO:0071704,GO:0071897,GO:0090304,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1990414,GO:1990466
Exons4
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsKOG1558@1,KOG1558@2759
Ec32 ortholog descriptionZinc finger, RanBP2-type
Ec32 orthologEc-17_003490.1
Cds size1635
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8232.16380.1prot_E_fasciculatus_S2_contig8232.16380.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8232 652..3932 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842483.9526641-UTR-E_fasciculatus_S2_contig8232:615..6511696842483.9526641-UTR-E_fasciculatus_S2_contig8232:615..651Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8232 616..651 +
1696842484.0153162-UTR-E_fasciculatus_S2_contig8232:3932..63561696842484.0153162-UTR-E_fasciculatus_S2_contig8232:3932..6356Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8232 3933..6356 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842483.9653976-CDS-E_fasciculatus_S2_contig8232:651..7541696842483.9653976-CDS-E_fasciculatus_S2_contig8232:651..754Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8232 652..754 +
1696842483.9764736-CDS-E_fasciculatus_S2_contig8232:1160..12521696842483.9764736-CDS-E_fasciculatus_S2_contig8232:1160..1252Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8232 1161..1252 +
1696842483.9867537-CDS-E_fasciculatus_S2_contig8232:1925..20531696842483.9867537-CDS-E_fasciculatus_S2_contig8232:1925..2053Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8232 1926..2053 +
1696842483.9971387-CDS-E_fasciculatus_S2_contig8232:2620..39321696842483.9971387-CDS-E_fasciculatus_S2_contig8232:2620..3932Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8232 2621..3932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8232.16380.1

>prot_E_fasciculatus_S2_contig8232.16380.1 ID=prot_E_fasciculatus_S2_contig8232.16380.1|Name=mRNA_E_fasciculatus_S2_contig8232.16380.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=545bp
MLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREGITGRNMPFAGDGQSL
GGGRAPEDARAAALKAAEKRQRQQGVMSGGGQRLGGVSGSSPSDAVSAAQ
RAAAAAQWRHTVSQGCGGHHGCTAGEKAGDNGDDDDNHWECGLCTLFNSL
TVNACDACGKERPATAPGTSVCDHGAGGSSSGGGRGGGSGVAGGTTTGRE
KRPAPTTGPAAAAAAAAAAGPGRLQKKSAVGARTASHGRSVGAPLGGGGG
AGTTGGGGGGGGLPSAGRTWTCRSCPFSFPNASERRTCESCGAARLLPAD
AGSGSGSGGGGGGDRAATAVGGTAGGRSSWDAELLPSWTCEACTVVNPGM
FLGCSVCGAERPAEKEAAGGGVGVGGGDDLATLSSEWTAEVGRGGGRGVT
AGGWMAAQGSSGVTDCSVGGGAAVGGETVGIGGRTRNDPGMESWGSAQPA
GEARVCRLCTLRNPPEASDCAACGIPLAESEAAVAAAASGGETAASAQGA
TGGGGRASRASATGKGEESSSHRPGAAAAAGASSSDEPECIDLS*
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mRNA from alignment at E_fasciculatus_S2_contig8232:616..6356+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8232.16380.1 ID=mRNA_E_fasciculatus_S2_contig8232.16380.1|Name=mRNA_E_fasciculatus_S2_contig8232.16380.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5741bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8232:616..6356+ (Ectocarpus fasciculatus EfasUO2)
GGTAGTTTCTACCCCTACGAGTTCATTCTCGGGACGATGCTGCACGAGCT
GGTTCACAACCAGATCGGCCCCCACAGCGCCAAGTTCTACCGGATGTTGG
ACCAGCTCAACGACGAATGCGACAAGCTCATTCGCGAAGGTGTGTTTTCT
TGGTTAGCATCGACCACGTTGACCGACTGACCAAGGAAACACCGTCAGTG
CCAGCAGGTAAAACCAAGGTTCCCGGGAGGGGGCCAATGTTCGAAAAATG
TGCATTGCACCATGTGCGAATGCCCAAAAAATCTCTCCACGTATCCTTGC
TTACTTTCCCGCTGAGCTCAACCTCCTCCTAATCTATTTGTGCAGTGTCT
CTCCTTTGCTCTCTCTCATTTCTACCTTCCGCGTGAACATGCTTTCTGTT
TGTTATTTCTTCTAATTTGATACAGGCATACGAGCTTGTCGGAGCCAACT
AGATCTAACATACTTGATCCCTTCGTGATCTTCTTTTCGTTTTTGGCCCT
GCGTCTCGTCTTGACTCGCATGTCCTTGCTCCCGCCGTGTTGTAGGCATC
ACCGGGCGCAACATGCCATTCGCAGGAGACGGGCAGTCCTTAGGGGGGGG
GCGAGCACCAGAGGATGCTAGGGCCGCTGCGCTGAAGGTACCCACCGAGG
TTTTCGCATCCATCGGGTTTTACGGCGGTTTTACGGCACCGGGGTACGCC
AAAACATACAGGAGAGAAACGATTTCAGCAAACACCGATCGCACCGCGTG
TGTTCGCTCGTACCATCAAGGCAGTCTGGCCCTCTCCTCCTGCGGTTTAC
AAAAGATCATACATACCACGGGCCGACACATCGTGCGTGCCGCCGGGTGG
GGTGGGGGGGTTGGGGTGAGGACACCAAGTCCAAGACCATGTTGTCGGGG
AAAATGACTGCTTCGAGTACGTATGAAGACTTGACTACCGCACCTGTTGG
TGGTTGGGTCGCAGAGATAACGTTTCTCGTTTTCGAAGACAACAACTAAC
GACTATTGAAGCCTCTCCAAACGATCATGCGCATGCGTGCGTTCGAGTTC
CGGTCGGGCGTGCAAGCAAGCGTGCAACATAGATGAATCAGTATATTTTC
TTTCGGCACAAAACACGATTGCAGCAATATGGTCGAGGGCGTGGATTTGA
TTTAGTATTGCAATACGCGTGACGCCCCCCGACAATGTTTTGGTCGCTTT
TGGGGTGTGTTTCTCCTCTGTCTTCTGTTGATACCCCCTCCCCCTCCTCG
CTTTGCTTGGTTTTGCCCCCGGTGTGCGGCCGACCGCTGCCGCCGTGTTC
GGCACGACAGGCGGCGGAGAAGAGACAGCGACAACAGGGTGTCATGAGCG
GCGGGGGGCAGCGGTTGGGCGGTGTTTCGGGCTCCTCTCCGTCGGATGCG
GTTTCCGCCGCGCAGCGTGCCGCAGCCGCCGCACAATGGTGAGCGAGCGA
GTAAGAATACCGTGTGCTAGTCAGTGTTGAGTCGATTGCGACAGCCGGGT
AACATAGTTGCTGGTGCCAAGGGCAGAAATGCTGTTCTCAGTAGCGCACG
CCAGATTTCTAGACGAGGCTTGATGGTCAGGGTCCGTGTTGTGGTCCTCG
TAGCGTATGTTCTTGTTGTCGTGGTTGTTTCGGCGAGAACAAGGAGGTAG
ATACCGGAATGAGAAACGAGACGTGAATAGGCAAGAGGACGGTATTAGAA
CTTGCACCGAGAACGACGAAAAAGTCTCCGCGAAACCTCAACAGCAGCAA
CATGACGATGATTTTCTCCGCCGACTGCGTAAGCGGGTACTTGCTACCTA
CGGCTGGGAAGCAACGATCAGTCCGCCAAAATGGCGAAAACGACAACGTG
ACATCGCCATAAGAAGACCGACAATAACATTGCATGTCGACAACGCCGGG
TGCTGCATCACTTGACTGCCTCGACAACAATCCGCATCAACCACGCCGCT
TTGCTGCGCTGCGTCACCTCACCCCCCTGAACACACCGCACCCCACACTC
CGCAGGAGGCACACCGTCAGCCAGGGCTGCGGAGGACACCACGGCTGCAC
CGCTGGAGAGAAAGCCGGCGACAACGGCGACGACGATGACAACCACTGGG
AGTGCGGGCTCTGCACGCTCTTCAACTCGCTCACCGTTAACGCGTGCGAC
GCCTGCGGGAAGGAGCGTCCCGCCACCGCCCCCGGGACTTCCGTCTGCGA
CCACGGTGCCGGCGGCAGCAGCAGCGGCGGTGGGCGGGGCGGAGGTAGCG
GTGTCGCCGGCGGCACCACTACGGGCCGTGAAAAGCGGCCCGCACCGACA
ACGGGGCCGGCGGCGGCGGCGGCAGCGGCGGCAGCAGCCGGGCCGGGGCG
ACTGCAAAAGAAGTCGGCGGTGGGAGCGCGGACGGCGAGCCACGGCCGCT
CCGTGGGTGCTCCCCTCGGAGGTGGCGGTGGTGCCGGCACCACCGGCGGC
GGCGGCGGCGGCGGCGGCCTTCCTTCAGCGGGGCGCACGTGGACGTGCCG
GAGTTGCCCATTTTCGTTTCCGAACGCTTCGGAGAGGCGGACGTGCGAGT
CGTGCGGAGCGGCGCGTCTTCTGCCCGCCGATGCGGGGAGCGGCAGCGGC
AGCGGCGGCGGCGGCGGCGGGGACCGTGCCGCAACGGCGGTAGGGGGGAC
GGCGGGCGGACGTAGCAGCTGGGACGCGGAGTTGCTGCCGTCGTGGACTT
GCGAAGCGTGCACGGTGGTGAACCCGGGGATGTTCTTGGGGTGCTCGGTG
TGCGGAGCGGAACGGCCCGCTGAAAAAGAAGCAGCAGGCGGCGGCGTTGG
CGTCGGCGGTGGCGACGACCTCGCGACCTTGAGCTCGGAATGGACGGCAG
AAGTTGGAAGAGGGGGAGGAAGAGGGGTCACCGCTGGCGGGTGGATGGCC
GCACAAGGCAGCAGCGGCGTGACCGACTGTTCCGTCGGTGGCGGCGCCGC
CGTCGGCGGGGAAACCGTCGGCATTGGCGGAAGAACACGGAACGACCCCG
GGATGGAGAGTTGGGGGTCAGCGCAGCCGGCAGGCGAGGCGCGGGTGTGC
CGGCTGTGCACTCTGCGGAACCCCCCGGAGGCGTCCGATTGCGCGGCCTG
CGGGATCCCGCTCGCAGAGAGCGAGGCCGCTGTTGCTGCGGCCGCGTCGG
GAGGAGAGACGGCGGCCAGTGCTCAAGGTGCGACCGGCGGCGGCGGGCGC
GCTAGCCGAGCGTCAGCGACGGGCAAGGGGGAAGAGAGCAGCAGTCATCG
CCCGGGGGCAGCAGCAGCAGCAGGCGCGTCGTCTTCCGACGAGCCCGAAT
GCATCGACTTGTCGTGAAGCAGGGCGTGTACAAGCTGCTCCTGTGCAACC
TCCCTTTTTTGTTGTGATATGCGTGTCTTTTTATCGGCAGAAGGTGACCG
CGGCTGCCGCGACGTGCGTTGGACTCTTACGTTGTTGTGCTTGCGCGTGG
TCCGCCTGTCAGACATCCGTCCGCGTGTCTGTTAGATCTGGTGGTGTAGG
ATCGACGGAGGAGGGGGAGGAGGAGCAAACTTCTCCTTCATGTACATAAA
GAGCGCGGTGGGCAGTAGGGCTACCCTAAACATATCTCCCCCCCTGAGGC
GGTGGGAATATGATGCTGCGCAGAGTTCTTTTTAGGCGACTGTAGCGAGC
GCCGCGCGCGGATGGTGCGATACAGCTTGCGTTTTGGAGCAGCCACGGGC
CTCCCAGACAAATGCTGTGTATGTAGATAGCCATCGAAGGTGCCGAATGT
CAATAGCGTACATGTTTGTTCGTGTTTGTTGTGGAAAGGAGGGGAAAGCT
TGATGGGGGCGACAAGCCTGGTCTGTCTTTTTCCTTTTTCGGTTTTCTTT
GTTCCGGTTTTTAAAAGTTTTTTTTTCTTTTTCTGCAAACACCAGTCCCC
TCCGTCGTTTGTTTCTTGGAAAGCGAACGACCGTATTGTTGGACGACCGT
GGGAGTAGTTTAACGGTGTGAGTGAAAAGGTGTTTCGTGTTAACCCTCTT
AGTGCTTGACGCCCATATGGGGACAATTGGGCGACACAGCACTCAGATAG
ATGTCTATTTGCCGCACCGTAGTCGCCCTAGGCTCCGCTCTGTGAAACGC
GCGTGAGAACCCTTGGGGCTATCATGCTTGGGTGGGGTGGTAAGCTGTAT
GATGCCTCTCCTCGGCCTCTGACTTGCTGTATACAATCTCCCAAGCATCG
TGTCCCCTGGATGGCAAAACTTTACAAGCCTGGTGCTGGAAAAAAATATT
GACTTGGCTTCAGCATGAAACGTGTCCCCACTGAAGCCAAGTCGCCCTGT
GTGTGGCAAGAAGCTCGTCACTCTCCGATTTCTTTTGAGGGACTGCTGTA
GCCGCTCGGCCAATGACTAACAAATAGCTTTCGTTTTTTTTTGCGGCGGG
ATTACGTACTTTGCATAGGAGGGTTAAACCTGCGGAAGGTAGGAAAATTC
CTCAAAACGCGTGTTGCAAGCACGGTCCGCTGAATTACGCTTCGTCGTGC
CAACGAACAGCTGCTGCTGGGCCGCATCATCTCTTACCGTAGTACCTTTG
GAAAAGCACTCATTGTACCCAGATAGGCTGCCCCATCCATGACACGGTCA
GTCGCCCTCGCAACCTTTTCAATCGTACATAGCCCCGCTGTTGGCTGTTG
GCCCGGTAGGGGACCCAAACACCAAACAAACATCCCTTCTTTTTTTCGAA
AAAATTACAGCCTCAAGGCAGGTCGGTGTAGCCAGGCACGCGCTCTTTAA
TCTGACCGTCTCGCTCCGCAACTCTGTCAAGCGCGTTACGTTGCTCCCCC
GGGTGACCACTTGTCTCTATTTACATTAGATGCCACCCCGTTCATCTGGG
CAAGACTAATCCTCACCAACGTATCACCACCACCTCTACTACCACCGCCA
CCACACGCTACCACAACCACCCGGGCAAAACCAAACCAAAGACGCCGCAA
GCTCAAAGCAGCTGTGATGGTGCTCTGTTGTGACCGGAAACGCACCCACC
TAGCTCTGTCACGAGGCCTTCTCCGACCTTTCGAACGCCTCGACCAATCA
AATGGACCCATTTTTTTTTCTTCGATTCACGACGGCCTCCCCCCCGCCGC
CACTATGTAACCGCGAACCCCCCACCAAAGGCAGCGTGGTCTTGAGGCTA
CGCAACAATGCAGCGTCTTGATGATGGAGACGGATGGAAATCTACGCGGT
CGCCGGTCAGTTTCGCCGCCGGCCAACCAGTGCACGGCAAGCAGCAGCTC
CGCTTTGACCGATCAAATCATGCGATCCGACGCCAAGGGCGAGGGCCCAC
TGAACCGCCGCCGATCTGAACGAACATGTAGCGTTTAAGCAAAACACTAT
TTTTTCGGTATTACAGCAGTACAGCAGTCATCCCCGCTTTAAGGATACTC
ATGTGTGGTTCTTGAAAAATGTGCCCCCCTACTGTTTTTACATTCTGCGG
GGCACCGTGCTTTAGAATCAAAGGAAGTGCCCGCAATATTGGTGTCCTCA
AAAGGAAGGAGCTCCAAGCGTGAACATTTTTTTGGGTACAAGTCTGCAGC
AGCAGTAGCAACCTCTACAGGCAGAGTAGAGCAGCAGTAACAACGACGGC
CTCAAAGGCAGAGCTCCGAGACTCCGTCTCCCGCCACGCAGCCATCCGCC
TCTAGCTCCGCTTCTAGCACCTGCGCACGTCGTCTCAAAGCCGCGAGGCG
ATCGGTGACCCTCTCCAGCGTAGCACAAGTCTGGCGTATCT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8232:616..6356+

>mRNA_E_fasciculatus_S2_contig8232.16380.1 ID=mRNA_E_fasciculatus_S2_contig8232.16380.1|Name=mRNA_E_fasciculatus_S2_contig8232.16380.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1635bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8232:616..6356+ (Ectocarpus fasciculatus EfasUO2)
ATGCTGCACGAGCTGGTTCACAACCAGATCGGCCCCCACAGCGCCAAGTT
CTACCGGATGTTGGACCAGCTCAACGACGAATGCGACAAGCTCATTCGCG
AAGGCATCACCGGGCGCAACATGCCATTCGCAGGAGACGGGCAGTCCTTA
GGGGGGGGGCGAGCACCAGAGGATGCTAGGGCCGCTGCGCTGAAGGCGGC
GGAGAAGAGACAGCGACAACAGGGTGTCATGAGCGGCGGGGGGCAGCGGT
TGGGCGGTGTTTCGGGCTCCTCTCCGTCGGATGCGGTTTCCGCCGCGCAG
CGTGCCGCAGCCGCCGCACAATGGAGGCACACCGTCAGCCAGGGCTGCGG
AGGACACCACGGCTGCACCGCTGGAGAGAAAGCCGGCGACAACGGCGACG
ACGATGACAACCACTGGGAGTGCGGGCTCTGCACGCTCTTCAACTCGCTC
ACCGTTAACGCGTGCGACGCCTGCGGGAAGGAGCGTCCCGCCACCGCCCC
CGGGACTTCCGTCTGCGACCACGGTGCCGGCGGCAGCAGCAGCGGCGGTG
GGCGGGGCGGAGGTAGCGGTGTCGCCGGCGGCACCACTACGGGCCGTGAA
AAGCGGCCCGCACCGACAACGGGGCCGGCGGCGGCGGCGGCAGCGGCGGC
AGCAGCCGGGCCGGGGCGACTGCAAAAGAAGTCGGCGGTGGGAGCGCGGA
CGGCGAGCCACGGCCGCTCCGTGGGTGCTCCCCTCGGAGGTGGCGGTGGT
GCCGGCACCACCGGCGGCGGCGGCGGCGGCGGCGGCCTTCCTTCAGCGGG
GCGCACGTGGACGTGCCGGAGTTGCCCATTTTCGTTTCCGAACGCTTCGG
AGAGGCGGACGTGCGAGTCGTGCGGAGCGGCGCGTCTTCTGCCCGCCGAT
GCGGGGAGCGGCAGCGGCAGCGGCGGCGGCGGCGGCGGGGACCGTGCCGC
AACGGCGGTAGGGGGGACGGCGGGCGGACGTAGCAGCTGGGACGCGGAGT
TGCTGCCGTCGTGGACTTGCGAAGCGTGCACGGTGGTGAACCCGGGGATG
TTCTTGGGGTGCTCGGTGTGCGGAGCGGAACGGCCCGCTGAAAAAGAAGC
AGCAGGCGGCGGCGTTGGCGTCGGCGGTGGCGACGACCTCGCGACCTTGA
GCTCGGAATGGACGGCAGAAGTTGGAAGAGGGGGAGGAAGAGGGGTCACC
GCTGGCGGGTGGATGGCCGCACAAGGCAGCAGCGGCGTGACCGACTGTTC
CGTCGGTGGCGGCGCCGCCGTCGGCGGGGAAACCGTCGGCATTGGCGGAA
GAACACGGAACGACCCCGGGATGGAGAGTTGGGGGTCAGCGCAGCCGGCA
GGCGAGGCGCGGGTGTGCCGGCTGTGCACTCTGCGGAACCCCCCGGAGGC
GTCCGATTGCGCGGCCTGCGGGATCCCGCTCGCAGAGAGCGAGGCCGCTG
TTGCTGCGGCCGCGTCGGGAGGAGAGACGGCGGCCAGTGCTCAAGGTGCG
ACCGGCGGCGGCGGGCGCGCTAGCCGAGCGTCAGCGACGGGCAAGGGGGA
AGAGAGCAGCAGTCATCGCCCGGGGGCAGCAGCAGCAGCAGGCGCGTCGT
CTTCCGACGAGCCCGAATGCATCGACTTGTCGTGA
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