mRNA_E_fasciculatus_S2_contig8217.16371.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8217.16371.1
Unique NamemRNA_E_fasciculatus_S2_contig8217.16371.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8217.16371.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI78_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 1.170e-49
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 1 
Query: 1414 QWGLSLLRQWAADDTVFNALERPSVCEEGAQRPSHGHLNDRSQARHRKQARATVVPCKGSSTTARASSADTGGLGNGLGDLRLAASPRERELSLTMEATPSVGEEVAVDLFTPG 1755
            +WGLSLLRQWAADDTVFNA ERPS  EE AQRPS+GHLNDRS  R R+QARATVVPCKGSSTTARASSA TGGLG+G GDLRL A+PRERELSL +EATPSVGEEVAVDLFTPG
Sbjct:    7 EWGLSLLRQWAADDTVFNAFERPSPSEEDAQRPSNGHLNDRSGVRRREQARATVVPCKGSSTTARASSACTGGLGHGGGDLRLTATPRERELSLALEATPSVGEEVAVDLFTPG 120
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BLAST of mRNA_E_fasciculatus_S2_contig8217.16371.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G143_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 3.220e-45
Identity = 95/113 (84.07%), Postives = 101/113 (89.38%), Query Frame = 1 
Query: 1417 WGLSLLRQWAADDTVFNALERPSVCEEGAQRPSHGHLNDRSQARHRKQARATVVPCKGSSTTARASSADTGGLGNGLGDLRLAASPRERELSLTMEATPSVGEEVAVDLFTPG 1755
            WGLSLLRQWAADDTVF+A ERPS  EE AQRPS+GHLNDRS AR R+QA  TVVPCKGSSTTARASSA TGGLG+G GDLRLAA+PRERELSL +EA PSVGEEVAVDLFTPG
Sbjct:   26 WGLSLLRQWAADDTVFDAFERPSPSEEDAQRPSNGHLNDRSGARRREQAMETVVPCKGSSTTARASSAGTGGLGHGGGDLRLAATPRERELSLVLEAMPSVGEEVAVDLFTPG 138
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8217.16371.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.170e-4985.09protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.220e-4584.07protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8217contigE_fasciculatus_S2_contig8217:372..5308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size1755
Hectar predicted targeting categoryother localisation
Exons6
Cds size1755
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8217.16371.1prot_E_fasciculatus_S2_contig8217.16371.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8217 372..5308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842482.9527922-CDS-E_fasciculatus_S2_contig8217:371..7241696842482.9527922-CDS-E_fasciculatus_S2_contig8217:371..724Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8217 372..724 -
1696842482.9640577-CDS-E_fasciculatus_S2_contig8217:1210..14281696842482.9640577-CDS-E_fasciculatus_S2_contig8217:1210..1428Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8217 1211..1428 -
1696842482.9742424-CDS-E_fasciculatus_S2_contig8217:1694..24131696842482.9742424-CDS-E_fasciculatus_S2_contig8217:1694..2413Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8217 1695..2413 -
1696842482.9896553-CDS-E_fasciculatus_S2_contig8217:3378..36751696842482.9896553-CDS-E_fasciculatus_S2_contig8217:3378..3675Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8217 3379..3675 -
1696842483.003497-CDS-E_fasciculatus_S2_contig8217:4353..44401696842483.003497-CDS-E_fasciculatus_S2_contig8217:4353..4440Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8217 4354..4440 -
1696842483.013498-CDS-E_fasciculatus_S2_contig8217:5227..53081696842483.013498-CDS-E_fasciculatus_S2_contig8217:5227..5308Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8217 5228..5308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8217.16371.1

>prot_E_fasciculatus_S2_contig8217.16371.1 ID=prot_E_fasciculatus_S2_contig8217.16371.1|Name=mRNA_E_fasciculatus_S2_contig8217.16371.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=585bp
MAAPGPVPEKTVWEARKLLCFDDSGILYARRRRGRALGYLRALHSSRSST
RRGLLEVGRALRAVDPRLKADWMNWAENGALTCSEEEIHQKKQHQDTSSI
DIGKGCVGVGLARISCVAATTARQGHAEASLGRRSSERSNSLQKRRRRLR
AWCDKAWGSFRPATNADLSAPTEQPPARELLFLCKNHLTFVGSDRGLRSR
VREDSVGKPVIAVALETGKAETQGEAVGGRAGEHRPVLVPCLRYARGVGS
VSAPGARISTATAGAKKKQEQPRQGWKTKTDEASKPFPERLPVGNHEGSS
EREGARPVMPSGGEGGDIAGDIVQNPGLSPDDRTEEQEGRVEGMVAASVR
AGDWILPARGLADVRSSRTGGGGTTLAGGERGGSRWLRVEAVSIGKEESI
ILATQGTGETKAPELRASLRLLEVSIALLPGSLIVRQIPSPDRNHVVGRD
EAAKEAEGGFTEAFRLPVLCAQWGLSLLRQWAADDTVFNALERPSVCEEG
AQRPSHGHLNDRSQARHRKQARATVVPCKGSSTTARASSADTGGLGNGLG
DLRLAASPRERELSLTMEATPSVGEEVAVDLFTPG
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mRNA from alignment at E_fasciculatus_S2_contig8217:372..5308-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8217.16371.1 ID=mRNA_E_fasciculatus_S2_contig8217.16371.1|Name=mRNA_E_fasciculatus_S2_contig8217.16371.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4937bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8217:372..5308- (Ectocarpus fasciculatus EfasUO2)
ATGGCAGCGCCTGGTCCTGTTCCAGAGAAGACCGTTTGGGAGGCAAGAAA
GCTACTCTGCTTTGATGACTCCGGTATTTTAGTGTGAACGGACCTGTGCG
CCTGGATGCATACCGCGCACACGTTGCCTCTCTTAGAAGTGTGGTACGAG
GGAGACTTGGTATGTACACAAGTCTGGATCTTGCGCAGCCTGCTTGCCGA
TCAACACACAACTGATCTGCTCAGTCTAGAGAGTGCGGGGTACAGACAGC
AGTACATGTGCCGAATATGCGGATATTATTAGCTCAGCTTTCACCGTGCA
TTGTCGTGGTCACCTGCGCATACATATGCATACAACCTGCGGCCGTGTTT
TTCTCTCGCCCCGCCGTGTTCGCCATGAGTTACCTCTCTCATGTCTAGAT
TTAATATACAAATAGTCTACCGTAGAAACGAGCCGCCGTGACGGACACTG
CCTGTCGTACCTGTTTGCGCAAACCGGCTGGATGAATGCTGTGGAGCCGC
CTTTTTCCACACTCTCCGCCTTTTCCCACTGCTGCTGTGTATACGATTGT
TCGTGTACGACGTGACTCGCAATAATACAGCAACAAATACTCGGAGTATT
TCATCACCTGCCTGCCATGGAGGTGTTTTGATGTCACGTGTCGCCTGTGC
GAACAGACTACAGACCTCAGATCCAAAAATGCCGTAGTCTACAATATACA
TCAGTTCCTGTGATGGGATGGGCAACAAATGCTGTAATTACGCACCCTAT
CACTTCCAGCAGTAATTCAGCAGTAGTTTGAGGTACTTTTCTGTACCACG
ATGTCCACCCAGGCATCTTGCAAGTAAGTGTGCTCATGCCGCAGACCGGA
CTTTGAAAATATCAATAGTACGCAAGAAGAAGGCGCGGGCGTGCCCTCGG
CTACCTCCGAGCGCTCCATTCTTCAAGATCTTCCACGCGACGAGGTCTCC
TGGAGGTAAGTTGATTGTTCGAATATCCACAGCAATACAGCAAGGGTACA
GCATTAGTCTAGTGCAAGGAGAAAGTGACGTAGATATTGTTTCCCACCTC
TGACAAGTTGCACGAGGTACCTGTGGATACATCACGATTCACGACGTCCC
AACGTCTTCTCGGCGTGCCGCCCGAAGATTCTACGCATCACGGTATGGTC
GGCCCCTGGCAATGCTGTCTTATAGTAGGCCCGTCTTCTGGACTGTACGC
TCAGGGCGTACCGACGGCTCGCGCGAGAAACGCTTGGATTGTGGCACGCT
ATGGTCCTGAGTATCGCGCCCTTTTCCTTCGCGCGGCCCGGAACTATGTA
CACAACAGCTCGACACTATTGGCGAACTATTGCATGTAGCATGTCTCGTG
CTTGGTTTTGAACTCGAAATATGGGCATTGAGTTTCGTACGAGCGAACAT
GTACAGGTTTGGATACATACATATATGCTGCCCCGTGTCTTTATGTTGCC
ATCCTCGACGGCTCTGCTGAGCAACGTGTCGAGAGCTCGACGGCGCCTGT
GAAAACCACAATGACACGGACGGAATATAGACAGAGGCCGAGGCGGGGTA
CAACAACCCTAGAGAACACAACGCGACGCGATAGATTTTGTGCACATCTG
AACACTCGGGCCTGCTCTCCGCCGGTCGGCCAGGTGGGCCGAGCGTTGCG
TGCAGTCGACCCCCGCCTGAAAGCTGATTGGATGAACTGGGCCGAAAATG
GCGCGTTGACATGTAGCGAAGAGGAGATACACCAGAAAAAACAGCACCAA
GACACATCGTCAATAGACATCGGTAAAGGCTGTGTCGGGGTAGGACTCGC
CCGGATCTCCTGCGTCGCAGCAACGACTGCTAGGCAGGGGCACGCCGAGG
CTTCGCTTGGCCGTCGATCGTCGGAGAGAAGCAACTCATTGCAGAAACGA
CGGAGGCGGCTACGCGCCTGGTGCGATAAGGTGTGCTTTAAGAAGAACCA
TCGCTACACACAGCCTCTGGCAACTGCTATAGTTCTGGTGATCGGGATCC
TTGTTTGATGCACTGCTTGTTCGAAGGAGTTTCACTCCGACGACCTGGAA
CAGGGCGTTTGCCTTCAACGATTCTCGTGCTGCCCCAAGGATAGTGATCG
TTCATCTTGTGCATATGCTCCGGCGTTGTGGCTAGGGGGTACAACGAGCA
GGGTTCTTACCGCCACCCGAAATCAGCACTCACTGACCCACGTGGCCGCC
TTTCTTGTCTTCCGGCTGACCAGTCCTACCTCACAGACTACTCCTGATCC
CTTGATCCGTCCATCATCTGCTTGTCCAATACCTTTGTTGGATCAGAAGC
GACCACGGTATCGCGCAGGATGCTACTATAGAGAAACCAATCTCGGTGAC
CTGATCTGAACCGATCATCATTCGACCTTTGTACTTTTAATCGGAATATG
GCGCATAACCCTGAAATTTACTGCGTAATGGCCTTGAGACCACAACGCCC
CACCCCCACTCACCATGGTGGAACCCGGAACTTCTCGAACATGTGGTTTC
TGTTTTTCGTCCACTCTCTCAAAATACGTCCGGAACGTTATTTTTTGCCC
AGTTGCGACCCCCCCCAAGCCGAGGTCTTCGTAATTCAGTAGCAGAAAAG
TTGTTGTTGACATTGTCATCGCCGCTCTCTTGTTGCTGCCGCATTTGTTT
GTTGTTTTTGTTCCAACGCAATTATCGACATGGGATCGAATCATTCCCTG
ATCTTCATCCGTCAGGAGCCGCTCCGCCGGGTGGCCTTGTTGTTCGTGGA
AAGACCCTCCCCAGCTCCCCTCCCTCCAGGGGGCACTTTCGACTAGACCC
ATTGGTGTTCACCACGGGGCATACCTCAACAGGGTAGTGATCCGTTTCCG
ATTGTTGTGTTTGCTGCCCTTGCCCAACGTGCGCACGCCAAATAGGCTTG
GGGATCTTTCCGGCCCGCGACCAACGCCGATCTTTCCGCACCGACGGAGC
AGCCGCCGGCTCGCGAACTCCTATTTCTGTGCAAGAATCATCTCACTTTC
GTCGGTTCTGATCGGGGTTTGCGGTCACGTGTCCGCGAGGATAGCGTCGG
GAAGCCGGTGATTGCCGTGGCACTGGAGACGGGAAAGGCAGAGACCCAAG
GCGAGGCTGTCGGTGGTCGTGCGGGAGAGCATCGACCGGTGCTTGTTCCA
TGCCTGCGATATGCTCGAGGCGTTGGTTCTGTGTCCGCTCCGGGAGCGAG
AATCTCGACGGCAACGGCCGGCGCAAAGAAGAAGCAAGAGCAGCCGCGGC
AGGGGTGGAAGACGAAGACGGACGAGGCCTCCAAACCATTCCCCGAGCGG
CTGCCCGTCGGGAATCACGAGGGCTCTAGCGAGAGGGAAGGGGCGCGTCC
AGTAATGCCAAGCGGAGGAGAAGGGGGCGATATTGCTGGCGACATCGTGC
AGAACCCCGGGCTGTCGCCAGACGACCGGACCGAGGAGCAGGAAGGCCGA
GTGGAAGGCATGGTCGCGGCGAGCGTTCGTGCCGGCGACTGGATTCTGCC
CGCCCGCGGTCTGGCAGATGTCAGGAGCAGCAGGACGGGCGGCGGCGGCA
CGACTCTGGCGGGAGGAGAAAGAGGAGGAAGCAGATGGTTGAGAGTGGAA
GCTGTTTCGATCGGGTGAGTTTCGACATCCGGCTTTCCGAAAAGAAGAAG
AAGCCTAATTTTCGGCAATTCTCTGCTGTGGGAAACATCGTTATTGCCGT
CAGGCGAGCAAAATCATGAGCTGGACAAATCCCTCTTAGTCAACAAAACT
ACTGCAAAGCCTTTGCTGAACCTTTACAGTGCTTTCACGACGTCCATGAC
GAGAGGAGGCTGACTGTGTTCTTGGTGCTTAACTCCCCTTCTCTCGGCTT
ACATTCTCTGCTGTACCCCGGTGCTCGTAGCAAAGAAGAGAGCATCATAC
TTGCCACGCAAGGTACGGGGGAGACAAAGGCACCAGAGCTTCGCGCCTCT
CTCAGGCTTTTGGAAGTCAGCATAGCTTTGCTACCTGGGTCTCTAATCGT
ACGGCAGATACCATCTCCCGATCGCAATCACGTTGTGGGAAGGGACGAAG
CTGCGAAGGAGGCGGAGGGAGGGTTCACGGAAGCTTTTCGGCTCCCTGGT
AAGAGAGGGAGGGTTAAGGCGAGTCGTTTTGCGCGGCTCATGCGTTGGGG
TTACCCGTAACGATTGCGATTGCTGTTTTCGGGCCATGAGCAAGGGTCAC
AGGTTTCCTCTCGGAACAATATCTGTTATTTTTTCGCTTGCAATTTCTGC
AATGCGACCTGGATTTGTTTTGTTTTCAAAGCCGGCTTTGGGATTGCAGG
AAAACAACCTGGTTAGAACAGAAGAACATCAAGTCGTACCCGCTTACGAC
GCACTCACTACTTCCCACGTTCATTCAGAGTCTGAGAATGCTTGGGTCTC
GAATACAAGCCCATAAGTTGTCCCAAAACCTATCCCCGAAATTGTTACCA
ATGAAGAGTGTCTCAACAGCAGGGGAAGGATTTCACGCCATAAATCCCAG
TCAGTGTGATGAGACAACGGCATGCAGGCGCACTCTTTTCTTGGCCATCA
CATACCGATCATCTCACGCGCGGCCGCTGACAAGTGTTGTGCGCCCAGTG
GGGATTGAGCCTCCTTCGACAGTGGGCGGCAGATGACACCGTCTTCAACG
CCTTGGAAAGGCCATCGGTGTGCGAGGAGGGCGCACAACGGCCAAGCCAT
GGACACCTGAACGATCGAAGCCAAGCGCGCCACCGAAAGCAAGCGAGGGC
GACGGTGGTCCCTTGCAAGGGGAGCAGCACGACGGCGAGGGCTTCTTCTG
CGGACACAGGAGGACTCGGAAACGGCTTAGGCGACTTACGATTGGCTGCA
TCCCCCCGGGAGCGGGAGTTGTCCTTGACGATGGAGGCAACACCGTCTGT
TGGCGAGGAGGTCGCGGTCGACCTCTTCACCCCAGGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8217:372..5308-

>mRNA_E_fasciculatus_S2_contig8217.16371.1 ID=mRNA_E_fasciculatus_S2_contig8217.16371.1|Name=mRNA_E_fasciculatus_S2_contig8217.16371.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1755bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8217:372..5308- (Ectocarpus fasciculatus EfasUO2)
ATGGCAGCGCCTGGTCCTGTTCCAGAGAAGACCGTTTGGGAGGCAAGAAA
GCTACTCTGCTTTGATGACTCCGGTATTTTATACGCAAGAAGAAGGCGCG
GGCGTGCCCTCGGCTACCTCCGAGCGCTCCATTCTTCAAGATCTTCCACG
CGACGAGGTCTCCTGGAGGTGGGCCGAGCGTTGCGTGCAGTCGACCCCCG
CCTGAAAGCTGATTGGATGAACTGGGCCGAAAATGGCGCGTTGACATGTA
GCGAAGAGGAGATACACCAGAAAAAACAGCACCAAGACACATCGTCAATA
GACATCGGTAAAGGCTGTGTCGGGGTAGGACTCGCCCGGATCTCCTGCGT
CGCAGCAACGACTGCTAGGCAGGGGCACGCCGAGGCTTCGCTTGGCCGTC
GATCGTCGGAGAGAAGCAACTCATTGCAGAAACGACGGAGGCGGCTACGC
GCCTGGTGCGATAAGGCTTGGGGATCTTTCCGGCCCGCGACCAACGCCGA
TCTTTCCGCACCGACGGAGCAGCCGCCGGCTCGCGAACTCCTATTTCTGT
GCAAGAATCATCTCACTTTCGTCGGTTCTGATCGGGGTTTGCGGTCACGT
GTCCGCGAGGATAGCGTCGGGAAGCCGGTGATTGCCGTGGCACTGGAGAC
GGGAAAGGCAGAGACCCAAGGCGAGGCTGTCGGTGGTCGTGCGGGAGAGC
ATCGACCGGTGCTTGTTCCATGCCTGCGATATGCTCGAGGCGTTGGTTCT
GTGTCCGCTCCGGGAGCGAGAATCTCGACGGCAACGGCCGGCGCAAAGAA
GAAGCAAGAGCAGCCGCGGCAGGGGTGGAAGACGAAGACGGACGAGGCCT
CCAAACCATTCCCCGAGCGGCTGCCCGTCGGGAATCACGAGGGCTCTAGC
GAGAGGGAAGGGGCGCGTCCAGTAATGCCAAGCGGAGGAGAAGGGGGCGA
TATTGCTGGCGACATCGTGCAGAACCCCGGGCTGTCGCCAGACGACCGGA
CCGAGGAGCAGGAAGGCCGAGTGGAAGGCATGGTCGCGGCGAGCGTTCGT
GCCGGCGACTGGATTCTGCCCGCCCGCGGTCTGGCAGATGTCAGGAGCAG
CAGGACGGGCGGCGGCGGCACGACTCTGGCGGGAGGAGAAAGAGGAGGAA
GCAGATGGTTGAGAGTGGAAGCTGTTTCGATCGGCAAAGAAGAGAGCATC
ATACTTGCCACGCAAGGTACGGGGGAGACAAAGGCACCAGAGCTTCGCGC
CTCTCTCAGGCTTTTGGAAGTCAGCATAGCTTTGCTACCTGGGTCTCTAA
TCGTACGGCAGATACCATCTCCCGATCGCAATCACGTTGTGGGAAGGGAC
GAAGCTGCGAAGGAGGCGGAGGGAGGGTTCACGGAAGCTTTTCGGCTCCC
TGTGTTGTGCGCCCAGTGGGGATTGAGCCTCCTTCGACAGTGGGCGGCAG
ATGACACCGTCTTCAACGCCTTGGAAAGGCCATCGGTGTGCGAGGAGGGC
GCACAACGGCCAAGCCATGGACACCTGAACGATCGAAGCCAAGCGCGCCA
CCGAAAGCAAGCGAGGGCGACGGTGGTCCCTTGCAAGGGGAGCAGCACGA
CGGCGAGGGCTTCTTCTGCGGACACAGGAGGACTCGGAAACGGCTTAGGC
GACTTACGATTGGCTGCATCCCCCCGGGAGCGGGAGTTGTCCTTGACGAT
GGAGGCAACACCGTCTGTTGGCGAGGAGGTCGCGGTCGACCTCTTCACCC
CAGGT
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