mRNA_E_fasciculatus_S2_contig8211.16369.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8211.16369.1
Unique Name	mRNA_E_fasciculatus_S2_contig8211.16369.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8211.16369.1 vs.
Match: EsV-1-164 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT2_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.910e-38
Identity = 67/94 (71.28%), Postives = 79/94 (84.04%), Query Frame = 1

Query:    1 GGSHVGCYLDDDSVPILGFLYEDEDSLTPASCIDSCRDLDEIPELAGVQGGNKCFCGTTDEYDLYGPGECDFPCSGDSEQTCGGDSSSNIWTVD 282
            GG+H+GCY D DS PIL FLYEDED+LTPASCI+SCR+  E  ELAGVQGG++C+CGTTD+Y  YG G C+F CSGDSEQTCGG  S+N+WTVD
Sbjct:  608 GGTHMGCYEDYDSDPILDFLYEDEDTLTPASCIESCREEGE--ELAGVQGGSQCWCGTTDDYTRYGTGTCNFSCSGDSEQTCGGRESANVWTVD 699

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BLAST of mRNA_E_fasciculatus_S2_contig8211.16369.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7T5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 6.000e-15
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1

Query:  157 KCFCGTTDEYDLYGPGECDFPCSGDSEQTCGGDSSSNIWTVD 282
            KC+CGTTD+Y  YG G C+F CSGD+EQTCGG  S+N+WTVD
Sbjct:    2 KCWCGTTDDYTRYGTGTCNFSCSGDNEQTCGGRESANVWTVD 43

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BLAST of mRNA_E_fasciculatus_S2_contig8211.16369.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ahniella affigens TaxID=2021234 RepID=A0A2P1PRX4_9GAMM)

HSP 1 Score: 75.5 bits (184), Expect = 3.400e-13
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1

Query:    7 SHVGCYLDDDSVPILGFLYEDEDSLTPASCIDSCRDLDEIPELAGVQGGNKCFCGTTDEYDLYGPGE-CDFPCSGDSEQTCGGDSSSNIWTVD 282
            ++VGC+ D  ++ + GFL E   + TP +CI  CR+L      AG+Q G  C CG   EY  YG  + CD+PC+GD  QTCGG S++ I+  +
Sbjct:  167 AYVGCFNDTSALELNGFL-ERSATNTPQTCIQKCRELGYA--FAGLQYGESCLCGN--EYGKYGESDHCDYPCTGDPAQTCGGYSTNAIYRTE 254

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BLAST of mRNA_E_fasciculatus_S2_contig8211.16369.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 9.500e-10
Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 1

Query:   10 HVGCYLDDDSVPILGFLYEDEDSLTPASCIDSCRDLDEIPELAGVQGGNKCFCGTTDE--YDLYGPGECDFPCSGDSEQTCGGDSSSNIWTV 279
            HVGCY+D+  V     L    +++T   C D C +L       G Q GN+C C   ++  Y  +  G CD PC+GDS++TCGG  + +++ +
Sbjct:   46 HVGCYVDNGMVNARPHLPLVMETMTNEMCYDRCHELGSF--FMGTQKGNECRCSREEDLAYSAFDFGVCDIPCAGDSDETCGGQLTIDLYKL 135

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BLAST of mRNA_E_fasciculatus_S2_contig8211.16369.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NPB4_STRPU)

HSP 1 Score: 64.7 bits (156), Expect = 1.560e-9
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 1

Query:    1 GGSHVGCYLDDDSVPILGFLYEDEDS-LTPASCIDSCRDLDEIP-ELAGVQGGNKCFCG-TTDEYDLYG---PGECDFPCSGDSEQTCGGDSSSNIWTV 279
            G  ++GC+ +    P+L  ++E  +S +T + CID C          AGV+ G +CFCG  +D Y L+G      CDF CSGD  ++CGG     I+T+
Sbjct:   50 GEGYLGCFAEKHPDPVLSGIHEPNNSNMTISYCIDICMSSSSANYTYAGVERGYECFCGEASDNYTLHGIVSDDYCDFKCSGDPTESCGGVGFIAIFTI 148

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BLAST of mRNA_E_fasciculatus_S2_contig8211.16369.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JVE3_BUGNE)

HSP 1 Score: 62.0 bits (149), Expect = 2.590e-9
Identity = 32/93 (34.41%), Postives = 50/93 (53.76%), Query Frame = 1

Query:   13 VGCYLDDDSVPILG-FLYEDEDSLTPASCIDSCRDLDEIPELAGVQGGNKCFCGTTDEYDLYGPG---ECDFPCSGDSEQTCGGDSSSNIWTV 279
            +GCY++D  V     F +     +TP  CI  CR    +  LAG++ G  C+CG   E++ YG     EC+ PCSG+ + TCGG   ++++  
Sbjct:   17 LGCYIEDTYVKTFDHFAHLPSYDVTPTDCITKCRKDGFL--LAGIRNGQDCYCGN--EFNRYGEAPVDECNLPCSGNPQVTCGGILRNSVYNT 105

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BLAST of mRNA_E_fasciculatus_S2_contig8211.16369.1 vs.
Match: Protein (xylosyltransferase n=2 Tax=Bradysia TaxID=35571 RepID=A0A8J5EER7_9DIPT)

HSP 1 Score: 62.4 bits (150), Expect = 4.210e-8
Identity = 35/91 (38.46%), Postives = 53/91 (58.24%), Query Frame = 1

Query:   13 VGCYLDDDSVPILGFLYEDEDSL-TPASCIDSCRDLDEIPELAGVQGGNKCFCGTTD---EYDLYGPGECDFPCSGDSEQTCGGDSSSNIW 273
            +GCY D+ +  +L   Y +  +L TP+ CI  C  L    + AGVQ   +CFCG  +   +Y L  P EC++ CSGD++Q CGG  + N++
Sbjct:  165 LGCYKDEKNFRVLSGYYMNFKTLNTPSKCIQLC--LQSGFQYAGVQYSTECFCGHNEPLAKYKLPDP-ECNYKCSGDAKQICGGYFTINVY 252

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BLAST of mRNA_E_fasciculatus_S2_contig8211.16369.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Geomesophilobacter sediminis TaxID=2798584 RepID=A0A8J7LVH5_9DELT)

HSP 1 Score: 61.2 bits (147), Expect = 5.220e-8
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 1

Query:    1 GGSHVGCYLDDDSVPILGFLYEDEDSLTPASCIDSCRDLDEIPELAGVQGGNKCFCGTTDEYDLYGP---GECDFPCSGDSEQTCGGDSSSNIWTV 279
            G + +GCY D+    +    + D   +TPA CI+ CRD  E    AGVQ G++CFCG    Y  YG     +C   C+GDS+  CGG  ++ I+ +
Sbjct:  164 GATPLGCYKDESRRDLKEKSWSDG-KMTPAKCINFCRD--EGFAFAGVQYGSQCFCGN--RYGKYGQLPDKKCKTACAGDSDLDCGGTWANFIYQI 254

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BLAST of mRNA_E_fasciculatus_S2_contig8211.16369.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7J9I8_BUGNE)

HSP 1 Score: 59.7 bits (143), Expect = 6.630e-8
Identity = 31/93 (33.33%), Postives = 49/93 (52.69%), Query Frame = 1

Query:   13 VGCYLDDDSVPILG-FLYEDEDSLTPASCIDSCRDLDEIPELAGVQGGNKCFCGTTDEYDLYGPG---ECDFPCSGDSEQTCGGDSSSNIWTV 279
            +GCY++D  V     F +     +TP  CI  CR    +   AG++ G  C+CG   E++ YG     EC+ PCSG+ + TCGG   ++++  
Sbjct:   79 LGCYIEDMYVKTFDHFAHLPSYDVTPTDCITKCRKDGFL--FAGIRNGQDCYCGN--EFNRYGEAPVDECNLPCSGNPQVTCGGILRNSVYNT 167

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BLAST of mRNA_E_fasciculatus_S2_contig8211.16369.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Xylaria bambusicola TaxID=326684 RepID=UPI002007DFD4)

HSP 1 Score: 61.6 bits (148), Expect = 7.120e-8
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 1

Query:   67 DEDSLTPASCIDSCRDLDEIPELAGVQGGNKCFCGTTDEYDLYGPGECDFPCSGDSEQTCGGDSSSNIW 273
            D++ +T   C+  C+  +    LAG+     C+CG T    L    +C FPCSGDS +TCGGD+  NIW
Sbjct:   60 DQNDMTVEKCVAHCKGNNY--RLAGLSYYGVCYCGNTVSTALLPEDQCTFPCSGDSTETCGGDTQINIW 126

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8211.16369.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8211.16369.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
EsV-1-164	1.910e-38	71.28	n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7...	[more]
Uncharacterized	6.000e-15	69.05	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
WSC	3.400e-13	41.94	domain-containing protein n=1 Tax=Ahniella affigen...	[more]
Uncharacterized	9.500e-10	34.78	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
WSC	1.560e-9	36.36	domain-containing protein n=1 Tax=Strongylocentrot...	[more]
WSC	2.590e-9	34.41	domain-containing protein n=1 Tax=Bugula neritina ...	[more]
Protein	4.210e-8	38.46	xylosyltransferase n=2 Tax=Bradysia TaxID=35571 Re...	[more]
WSC	5.220e-8	37.50	domain-containing protein n=1 Tax=Geomesophilobact...	[more]
WSC	6.630e-8	33.33	domain-containing protein n=1 Tax=Bugula neritina ...	[more]
WSC	7.120e-8	40.58	domain-containing protein n=1 Tax=Xylaria bambusic...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8211	contig	E_fasciculatus_S2_contig8211:4633..6661 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	0
Seed ortholog score	147.1
Seed ortholog evalue	4.1e-33
Seed eggNOG ortholog	2880.D7FRT2
Model size	544
KEGG ko	ko:K06560
KEGG Pathway	ko04145,ko05152,map04145,map05152
Hectar predicted targeting category	other localisation
Exons	3
EggNOG free text desc.	protein xylosyltransferase activity
EggNOG OGs	KOG4157@1,KOG4157@2759
Cds size	285
COG Functional cat.	U
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko04090,ko04091,ko04131

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842482.8315947-CDS-E_fasciculatus_S2_contig8211:4632..4722	1696842482.8315947-CDS-E_fasciculatus_S2_contig8211:4632..4722	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8211 4633..4722 +
1696842482.8488188-CDS-E_fasciculatus_S2_contig8211:5490..5558	1696842482.8488188-CDS-E_fasciculatus_S2_contig8211:5490..5558	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8211 5491..5558 +
1696842482.8604748-CDS-E_fasciculatus_S2_contig8211:6276..6403	1696842482.8604748-CDS-E_fasciculatus_S2_contig8211:6276..6403	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8211 6277..6403 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842482.8770628-UTR-E_fasciculatus_S2_contig8211:6403..6661	1696842482.8770628-UTR-E_fasciculatus_S2_contig8211:6403..6661	Ectocarpus fasciculatus EfasUO2	UTR	E_fasciculatus_S2_contig8211 6404..6661 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8211.16369.1	prot_E_fasciculatus_S2_contig8211.16369.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8211 4633..6403 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8211:4633..6661+
coding sequence from alignment at E_fasciculatus_S2_contig8211:4633..6661+

protein sequence of mRNA_E_fasciculatus_S2_contig8211.16369.1

>prot_E_fasciculatus_S2_contig8211.16369.1 ID=prot_E_fasciculatus_S2_contig8211.16369.1|Name=mRNA_E_fasciculatus_S2_contig8211.16369.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=95bp
GGSHVGCYLDDDSVPILGFLYEDEDSLTPASCIDSCRDLDEIPELAGVQG
GNKCFCGTTDEYDLYGPGECDFPCSGDSEQTCGGDSSSNIWTVD*

mRNA from alignment at E_fasciculatus_S2_contig8211:4633..6661+

Legend: CDSpolypeptideUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8211.16369.1 ID=mRNA_E_fasciculatus_S2_contig8211.16369.1|Name=mRNA_E_fasciculatus_S2_contig8211.16369.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2029bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8211:4633..6661+ (Ectocarpus fasciculatus EfasUO2)
GGCGGTTCGCACGTCGGTTGCTACCTAGATGACGACAGCGTCCCTATCCT
CGGCTTCCTCTACGAGGACGAGGACAGTTTGACACCGGCGGTAAGAGAGA
GAGGGAGAGAGAGAGAGAGAGAGAGGACGCTGGTTGAGCATGAGATGATG
AGAGGCCTGAAGCGCTTGAAATCGTGTGGAGAATAGCATCGCAGTACATG
TTTAAGGCGGTCACCCAATACGCTGAAGGAGATGAGGACAAGGACCGGTG
CCGCTGCTGCAGCCTCACCTTTTGAGGACGTGATGCATCGGTACTCATGC
GATCGCGCCGAACGAACGACCTTTTGATTCATTTTGTTCCCAAAGTCCAA
TACAGCTGTTGTGTTTCTTTTGTCATCCCTCCCCCCCACGGCGCTTCGCG
CTAGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCAATGCTCCGTCC
CGGCTTTGTAGGAATGCAAGGTCTATGGTCTAACGACTACGGCATGCACG
ACTATGAGTACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGTTTGATT
TTTGTTTCTCTTTGTCTTTATGTCTTACTCTTTNNNNNNNNNNCCCCGGC
CCGGTTTTTGTGGAAGTCAAGGTTTTTGGCCCAAACCCAAGGGGAGGCAC
GACTTTGTTTCCCCCCCCCCCCCCCCCCCGTCTGGCCCACTGTTGACAGA
TTTGTATCGCTGTCGTTCAAGTTGTCAACCTGTAAACCGTCTCTCCTCCT
GTTACCAGAGCTGCATGCTGTTGCTGTTGTTTGAATTTGATACCCTAACC
TAGCCCCTCCCTTCCCCATGTAACCCGTGGGCCCTTGCCCTTGCCCTTGT
GTTGCCAGAGTTGCATCGACAGCTGCAGGGATTTGGACGAGATACCTGAA
CTAGCGGGAGTGCAGGGCGGAAACAAGTGAGTGTTGCTGCTGCTGCTGCT
GCTGCTGCTACTGCTGACGTTTGGATTGTGTAGATAAAAACCTGTGTGTG
ATGTGATTTTTGGGCGAAAGTGAAACTGTGCGTGCTCTACTGCTGTTTGT
GGGGTGATTCGTGGTTTCAATGAAGGGCCTGTCGGTGAGCTATCCCTATC
CCGGGCCACGAAATAAACAAGTAGGACTGGTTGGTTCCCACAAGAAGGGA
GTTAGTTACGCGGAGAACACGAAAAAGAGACAAAGAGGCAGGCAGTACCA
ACGCCTCACTGCCGAGGTTGTTGGTTCCCTCACAACCATTGTTGGTTCCC
TCACAACCATTGCTGGTTACCTCACAACCATTGTTGGTTCCCTCACAACC
ATTGCTGGTTCCCTCACAACCATTGTTGGTTCCCTCACAACCATTGTTGG
TTCCCTCACAACCATTGTTGGTTCCCTCACAACCATTGCTGGCTGGCTCT
ACAGTAGTAGTGGTCACGGTTGAAAAATGCTGGGGTCCCTGTCTAGACTA
ATGCCGATGAAATCTTCTCAATGAATTCCAATTATTTATTATTAACTCGC
GTTGTGTTCCTTTCCTTCTTCGTGCCGTGCCTAACCTCAAATGAAGCCTA
ATACTTTCATTATTTTACTCACTCGCGTTGTGTTCCTCTTTGTTTGTGCC
CACGGTTTGGTTGTCTGTCGAAACCCAACCGAACCAAACCAAAGGTGCTT
TTGCGGCACTACCGACGAGTACGATTTGTACGGCCCCGGTGAGTGCGACT
TCCCGTGCAGCGGCGACAGCGAGCAGACATGTGGAGGCGACTCGTCGTCC
AACATCTGGACCGTCGACTGATCGGTTGGTTAACACGTGGTGGCTAGCTA
GATTCTGGAAGACCCCGGCGGCCAGTTTCCTTGCGTACGGTATGTTTGGT
GCCTCGACGGGTGTGGCCGGTTTTCACCGATCCGATCCAAGCCAGGTTGC
TCTCCAGCTTCATATCCGTGGTATGTACCTACACCTCCCCCCGCTGGGTA
GGGTTAGGTAGGTACATCATTTTTTTTTTAATTTTCCCGGCACTTCGACG
TGTGTCGGGTGCTTTTCCGTTCGTTGTGG

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8211:4633..6661+

>mRNA_E_fasciculatus_S2_contig8211.16369.1 ID=mRNA_E_fasciculatus_S2_contig8211.16369.1|Name=mRNA_E_fasciculatus_S2_contig8211.16369.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=285bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8211:4633..6661+ (Ectocarpus fasciculatus EfasUO2)
GGCGGTTCGCACGTCGGTTGCTACCTAGATGACGACAGCGTCCCTATCCT
CGGCTTCCTCTACGAGGACGAGGACAGTTTGACACCGGCGAGTTGCATCG
ACAGCTGCAGGGATTTGGACGAGATACCTGAACTAGCGGGAGTGCAGGGC
GGAAACAAGTGCTTTTGCGGCACTACCGACGAGTACGATTTGTACGGCCC
CGGTGAGTGCGACTTCCCGTGCAGCGGCGACAGCGAGCAGACATGTGGAG
GCGACTCGTCGTCCAACATCTGGACCGTCGACTGA