mRNA_E_fasciculatus_S2_contig821.16367.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig821.16367.1
Unique NamemRNA_E_fasciculatus_S2_contig821.16367.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig821.16367.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEE4_ECTSI)

HSP 1 Score: 290 bits (741), Expect = 1.530e-97
Identity = 151/212 (71.23%), Postives = 156/212 (73.58%), Query Frame = 1 
Query:    1 MIDCVDELMELDCSDMSVCGNDCTFEDSHPRIPSDSIVLPVNNFGANYLQLSVCSKGVSAAKLTHFGQVSMERCSEDDFRVCDLAIAPRTLTAVAFPPDTTYLRVQQCVLVETAAAATSEXXXXGSGGQEGEEMWECLEDPVPAEYYGTPYHWPSAVDVDYSVAALCEKDSHCPGSFCSSQQQPRICAPKMEEHFQQSGEHFLDPRWVILNN 636
            MIDCVDELMELDCSDMSVCGNDCTFE S+P                                      VSMERCSEDDFRVCDLAIAPR LTAVAFPPDTTYLRVQQCVLVETA      XXXX        E+WECLE+PVPAEYYGTPYHWPSAVDVDYS AALCEKDSHCPGSFCSSQQ+PRICAPK+EEHFQQSGEHFLDPRW ILNN
Sbjct:    1 MIDCVDELMELDCSDMSVCGNDCTFEYSNP--------------------------------------VSMERCSEDDFRVCDLAIAPRALTAVAFPPDTTYLRVQQCVLVETAXXXXXXXXXXXXXXXXX-EVWECLENPVPAEYYGTPYHWPSAVDVDYSAAALCEKDSHCPGSFCSSQQEPRICAPKLEEHFQQSGEHFLDPRWEILNN 173
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BLAST of mRNA_E_fasciculatus_S2_contig821.16367.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVA0_9STRA)

HSP 1 Score: 180 bits (456), Expect = 1.080e-52
Identity = 93/212 (43.87%), Postives = 128/212 (60.38%), Query Frame = 1 
Query:    1 MIDCVDELMELDCSDMSVCGNDCTFEDSHPRIPSDSIVLPVNNFGANYLQLSVCSKGVSAAKLTHFGQVSMERCSEDDFRVCDLAIAPRTLTAVAFPPDTTYLRVQQCVLVE-TAAAATSEXXXXGSGGQE-GEEMW--ECLEDPVPAEYYGTPYHWPSAVDVDYSVAALCEKDSHCPGSFCSSQQQPRICAPKMEEHF---QQSGEHFLDP 615
            M +CV  LM  +C DMSVCG++C  + +H      + VLPVNNFG NYLQ SVC +G ++ +L+ F QVSMERC E  F VC   I P T TA+A   + +Y+R+++CV V+    A T      G+     G++ +  ECL++P P EYYGT   WPS +DV+Y+ A  CE D  C GS+C +   P  CAPK  +HF   + +G  +LDP
Sbjct:   73 MTECVSRLMGENCEDMSVCGSNCVGQGNHLIDMDTARVLPVNNFGENYLQFSVCHQGPNSHRLSKFSQVSMERCDESSFHVCPYWIPPNTFTALAISANASYIRMERCVYVDYNEDAPTPSPTESGTADDSSGDDNFVAECLKEPKPVEYYGTRTLWPSFIDVEYAGAMYCESDEQCRGSYCDTNHVPPKCAPKATKHFDVGENAGRDYLDP 284
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BLAST of mRNA_E_fasciculatus_S2_contig821.16367.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLL9_9STRA)

HSP 1 Score: 164 bits (416), Expect = 4.070e-47
Identity = 81/205 (39.51%), Postives = 117/205 (57.07%), Query Frame = 1 
Query:    1 MIDCVDELMELDCSDMSVCGNDCTFEDSHPRIPSDSIVLPVNNFGANYLQLSVCSKGVSAAKLTHFGQVSMERCSEDDFRVCDLAIAPRTLTAVAFPPDTTYLRVQQCVLVETAAAATSEXXXXGSGGQEGEEMWECLEDPVPAEYYGTPYHWPSAVDVDYSVAALCEKDSHCPGSFCSSQQQPRICAPKMEEHFQQSGEHFLDP 615
            M+DC+DE M  DC DMSVCG++C    +   I + + +LPVNNFGANY+Q SVC  G+    L+ F  V M RC +  F+VC   I PRT T +A P ++TY+++++ V ++   A         S  +  + +   L +P P EYYGT   WPS +D++++    C  D  C GS+C     P  CAPK  +HF +S   F+DP
Sbjct:   49 MMDCIDEHMLQDCQDMSVCGSNCIGNGNSYDIRNQARILPVNNFGANYIQFSVCDLGIDLDILSRFETVRMRRCDDATFKVCPFWIPPRTFTGLAIPKNSTYIKMERTVYLQKRLA----DEWNVSWTRTDDFVAAVLRNPPPEEYYGTEEMWPSTIDIEFAENHFCSSDEQCLGSYCDRSHVPPKCAPKSIKHFMRSAASFMDP 249
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig821.16367.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.530e-9771.23protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical1.080e-5243.87protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Hypothetical4.070e-4739.51protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig821contigE_fasciculatus_S2_contig821:16534..18886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size639
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_001990.1
Cds size639
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842482.6640153-CDS-E_fasciculatus_S2_contig821:16533..166231696842482.6640153-CDS-E_fasciculatus_S2_contig821:16533..16623Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig821 16534..16623 +
1696842482.6730955-CDS-E_fasciculatus_S2_contig821:16869..169831696842482.6730955-CDS-E_fasciculatus_S2_contig821:16869..16983Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig821 16870..16983 +
1696842482.6847794-CDS-E_fasciculatus_S2_contig821:17551..178541696842482.6847794-CDS-E_fasciculatus_S2_contig821:17551..17854Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig821 17552..17854 +
1696842482.693654-CDS-E_fasciculatus_S2_contig821:18754..188861696842482.693654-CDS-E_fasciculatus_S2_contig821:18754..18886Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig821 18755..18886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig821.16367.1prot_E_fasciculatus_S2_contig821.16367.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig821 16534..18886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig821.16367.1

>prot_E_fasciculatus_S2_contig821.16367.1 ID=prot_E_fasciculatus_S2_contig821.16367.1|Name=mRNA_E_fasciculatus_S2_contig821.16367.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=213bp
MIDCVDELMELDCSDMSVCGNDCTFEDSHPRIPSDSIVLPVNNFGANYLQ
LSVCSKGVSAAKLTHFGQVSMERCSEDDFRVCDLAIAPRTLTAVAFPPDT
TYLRVQQCVLVETAAAATSESDDDGSGGQEGEEMWECLEDPVPAEYYGTP
YHWPSAVDVDYSVAALCEKDSHCPGSFCSSQQQPRICAPKMEEHFQQSGE
HFLDPRWVILNN*
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mRNA from alignment at E_fasciculatus_S2_contig821:16534..18886+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig821.16367.1 ID=mRNA_E_fasciculatus_S2_contig821.16367.1|Name=mRNA_E_fasciculatus_S2_contig821.16367.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2353bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig821:16534..18886+ (Ectocarpus fasciculatus EfasUO2)
ATGATAGATTGCGTCGACGAGCTCATGGAGTTGGATTGTTCGGACATGAG
CGTGTGCGGGAATGACTGCACCTTCGAGGACAGCCACCCGGTGAGCAGCT
GCATCGCTCTCACTGTTGAATACGCCGCATAAGCAGAGACCGCGGAGCCA
TCACATCCATGTGCAACCTCGAGGCTTCATCGTTTTTATACAGCAAGCCG
TCTATGGATAATCGCGAATGCTTGGGGTCCCGTTTCGCACCCGTAAAAGG
TTACCTCCCCTATGCAAACTAATGTCGAAACCTAGTTGGGCTTATACCCA
GCCGCTCTTGCCTCGCTGTCGCTCAACTCCGAACAGCGTATCCCAAGCGA
TTCCATAGTTCTCCCGGTCAACAACTTTGGCGCCAATTATCTACAGCTGA
GCGTTTGTTCGAAGGGCGTGAGCGCTGCCAAGCTCACCCATTTTGGCCAG
GTATTTGTGAATCTGCAATGGTTCGCAACAGTCGAGCGTAGCTTGTTCTC
AGGGAGTTAACATACAATATTTGTCCATACGGTAATGCGATATTTGGTGT
GCTACCATATGGGTGGAATGCCAGCTGTCGGGCGCTTTGAACATCGATAT
ATGCAGTAAAGTCGAGTTCAGTTTGCACATGTATGCTGCTCTACTACGTT
TCGTGCTAGCCTGTGTATCGAAGGGCAGACTGCTGGTGTTCCTATGTTCG
ATATTTTTTGGAGAGCGTGTAACGCGGAAACCCGTGAGTGCAGCCAGCCC
CACCTTTCTTTCCCTACCGCGTCTGCAGCATCGGAATGACCCCTCTAGCG
ACGTGTAGCTACTAGTTGAGATGAAGAAGTAGGGAGAATTTCCCCTCATA
TGCAACCAAGCCTGTGGCCGGAAGAGGCTGTGGCCGGAGAAGCATCCCGT
CGCGACGGGCACATAGCGAACGATGTAGCGGCCCGGTGAGTACCGTAACA
CGATAACCCCCCCCAGAACCATACTGTGGATTTCTTGTTTACCATCCCCG
CCACCACCACCATCACAGGTGAGCATGGAGAGGTGCAGCGAGGACGACTT
CCGCGTGTGCGACCTCGCGATTGCGCCGCGCACCCTGACGGCGGTGGCAT
TTCCGCCAGACACCACCTACCTCCGCGTGCAACAGTGTGTGCTGGTGGAG
ACGGCAGCTGCGGCTACCTCAGAGAGTGACGACGACGGCAGCGGGGGACA
AGAGGGAGAGGAGATGTGGGAATGTCTAGAGGATCCCGTGCCGGCGGAGT
ACTACGGGACGCCGTATCATTGGCCAAGCGCCGTGGACGTCGACTACTCG
GTGGCCGCTTTGTGCGAGAAGGTATGAATAGCGCAGCGCGCCGGATAGTC
GTGTTCGTGGACGTCCAAGTGGCTTGGTTGGGTGAAGAGCTGAAGAGGGT
ATTTTCCGCCTTGTTGGTCAGGAGGGAAGGTGGCCGGGTCCACCGCGACT
TCCTAGTAGTGCATAACCTTTTCTGTTCCCGTTCGAGGAGCGGGGGTAGC
CATTGGTGTTACCGTACTTTCTTTGGTTTTGCGTTTTCTCCACCGTCGTT
TGGTCGGTTGGTTGTCGTTGCGAGAAAGCCGCAATGTAACGAACGGAAGA
TTGATGGACTGGGAACAGCATCGTTGTTCGTCGTTTCCATGATCGAGTGA
TGCGAGTAGAAGCCTCCATCAACGCCAAGAACAAAAATCTAGTGAGCAGG
GTGTGCGTGTGTTGCCCCATCTATTCTGGGGCCGGTTTACAGGCCTTTCG
GCGTATTAACCTGACGTATGTATCACTCGGGGTCACACAAGAGGAAGGTC
GAGAGGAAGGTCCGACAGGGAATTTTTTCATTCCTGTTGTTGTTTGGATG
CCCCACTTTCCCCCCTGCGGTGAAGACACAAATCGAGATACATACGTTTA
ATCGGCAGGACAATCTGACACAACACGGCGGACTGACAATGGGCTGACCC
CCCTCTGCATTCATGCCGCCTGAAAATTGGGAGGGACGCCCACTTGGAAT
CTGTACGATCGGTCAAGTCGGAACATACGTCTGGTGTGGCGAACTCGTTC
ACCAAGTTGTACAACGGATGCTGTTCCAGCTGGAAGCCGTTGTCAGACGC
CGATTGTCTGCCGCTCCGACCCCTTAATAACCTTCTCCTTTCCCCGCCCC
CCCCCTCGGGCACACGCGCACTTCCGAACCGCCGTTCGTTCCGATGTTTT
TACTATTTCCACCTCCAACAGGATAGCCACTGCCCCGGCTCGTTCTGCTC
GTCACAGCAGCAGCCAAGAATATGTGCGCCAAAGATGGAAGAACACTTCC
AACAGAGCGGCGAGCATTTCTTGGATCCACGCTGGGTCATCCTCAACAAC
TGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig821:16534..18886+

>mRNA_E_fasciculatus_S2_contig821.16367.1 ID=mRNA_E_fasciculatus_S2_contig821.16367.1|Name=mRNA_E_fasciculatus_S2_contig821.16367.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=639bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig821:16534..18886+ (Ectocarpus fasciculatus EfasUO2)
ATGATAGATTGCGTCGACGAGCTCATGGAGTTGGATTGTTCGGACATGAG
CGTGTGCGGGAATGACTGCACCTTCGAGGACAGCCACCCGCGTATCCCAA
GCGATTCCATAGTTCTCCCGGTCAACAACTTTGGCGCCAATTATCTACAG
CTGAGCGTTTGTTCGAAGGGCGTGAGCGCTGCCAAGCTCACCCATTTTGG
CCAGGTGAGCATGGAGAGGTGCAGCGAGGACGACTTCCGCGTGTGCGACC
TCGCGATTGCGCCGCGCACCCTGACGGCGGTGGCATTTCCGCCAGACACC
ACCTACCTCCGCGTGCAACAGTGTGTGCTGGTGGAGACGGCAGCTGCGGC
TACCTCAGAGAGTGACGACGACGGCAGCGGGGGACAAGAGGGAGAGGAGA
TGTGGGAATGTCTAGAGGATCCCGTGCCGGCGGAGTACTACGGGACGCCG
TATCATTGGCCAAGCGCCGTGGACGTCGACTACTCGGTGGCCGCTTTGTG
CGAGAAGGATAGCCACTGCCCCGGCTCGTTCTGCTCGTCACAGCAGCAGC
CAAGAATATGTGCGCCAAAGATGGAAGAACACTTCCAACAGAGCGGCGAG
CATTTCTTGGATCCACGCTGGGTCATCCTCAACAACTGA
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