mRNA_E_fasciculatus_S2_contig8209.16364.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8209.16364.1
Unique NamemRNA_E_fasciculatus_S2_contig8209.16364.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8209.16364.1 vs.
Match: UDENN (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5D8_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 6.050e-6
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 2 
Query:    2 AGANFVGPNNGQDASGPASQDAQDPFAGL 88
            AGA FVGPNNGQ ASGPAS+D QDPFAGL
Sbjct: 1405 AGAAFVGPNNGQGASGPASEDTQDPFAGL 1433
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8209.16364.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UDENN6.050e-686.21domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8209contigE_fasciculatus_S2_contig8209:1451..1750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size302
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842482.3533177-CDS-E_fasciculatus_S2_contig8209:1450..17501696842482.3533177-CDS-E_fasciculatus_S2_contig8209:1450..1750Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8209 1451..1750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8209.16364.1prot_E_fasciculatus_S2_contig8209.16364.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8209 1451..1750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8209.16364.1

>prot_E_fasciculatus_S2_contig8209.16364.1 ID=prot_E_fasciculatus_S2_contig8209.16364.1|Name=mRNA_E_fasciculatus_S2_contig8209.16364.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=100bp
GWGQFCRAEQWPRCEWARESRRSGSVRRPLDLSGGPLGWIKYIRWTAVAM
PLVVRKCTTVVCRPTVYQLAAPGRALRAWCDWKCFGRLGTYSCLACLSG*
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mRNA from alignment at E_fasciculatus_S2_contig8209:1451..1750+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8209.16364.1 ID=mRNA_E_fasciculatus_S2_contig8209.16364.1|Name=mRNA_E_fasciculatus_S2_contig8209.16364.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=300bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8209:1451..1750+ (Ectocarpus fasciculatus EfasUO2)
GGCTGGGGCCAATTTTGTCGGGCCGAACAATGGCCAAGATGCGAGTGGGC
CCGCGAGTCAAGACGCTCAGGATCCGTTCGCCGGCCTTTAGACCTGTCTG
GCGGCCCGTTGGGCTGGATAAAATACATCCGTTGGACGGCGGTTGCGATG
CCGTTGGTAGTGCGGAAATGCACTACTGTGGTGTGCCGTCCAACCGTCTA
CCAATTGGCTGCTCCTGGCCGTGCTTTGCGAGCTTGGTGTGATTGGAAAT
GTTTTGGGAGGCTGGGGACGTACTCATGCCTTGCATGCCTTAGCGGTTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8209:1451..1750+

>mRNA_E_fasciculatus_S2_contig8209.16364.1 ID=mRNA_E_fasciculatus_S2_contig8209.16364.1|Name=mRNA_E_fasciculatus_S2_contig8209.16364.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=300bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8209:1451..1750+ (Ectocarpus fasciculatus EfasUO2)
GGCTGGGGCCAATTTTGTCGGGCCGAACAATGGCCAAGATGCGAGTGGGC
CCGCGAGTCAAGACGCTCAGGATCCGTTCGCCGGCCTTTAGACCTGTCTG
GCGGCCCGTTGGGCTGGATAAAATACATCCGTTGGACGGCGGTTGCGATG
CCGTTGGTAGTGCGGAAATGCACTACTGTGGTGTGCCGTCCAACCGTCTA
CCAATTGGCTGCTCCTGGCCGTGCTTTGCGAGCTTGGTGTGATTGGAAAT
GTTTTGGGAGGCTGGGGACGTACTCATGCCTTGCATGCCTTAGCGGTTAG
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