mRNA_E_fasciculatus_S2_contig8201.16358.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8201.16358.1
Unique NamemRNA_E_fasciculatus_S2_contig8201.16358.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8201.16358.1 vs.
Match: Fimbrin (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP49_ECTSI)

HSP 1 Score: 268 bits (684), Expect = 2.150e-85
Identity = 137/147 (93.20%), Postives = 140/147 (95.24%), Query Frame = 1 
Query:    1 FNQFLGAVGSERQVWSFGAELADGVAWCTLLNAIDPAACPPPDEHDAEANAAGAIEAVHKMGVKGVFMTKEALLESDKKQNIMFSAQLMNVFPTIPTHLRPPPTFKSGA-GSSRRGSGRAPFSSTYDSRGGSGVSTADSSMYTGSPA 438
            FNQFLGAVGSERQVWSFGAELADGVAWCTLLNAIDPAACPPPDEHDAE NAA AIEAVHKM VKGVFMTKEALLESDKKQN+MF AQLMNVFPTIPT+LRPPPTFKSGA GSS+RGSGRAPFSSTYDSRGGSG STADSSMYT SPA
Sbjct:  191 FNQFLGAVGSERQVWSFGAELADGVAWCTLLNAIDPAACPPPDEHDAETNAASAIEAVHKMEVKGVFMTKEALLESDKKQNVMFCAQLMNVFPTIPTYLRPPPTFKSGASGSSKRGSGRAPFSSTYDSRGGSGASTADSSMYTSSPA 337
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8201.16358.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Fimbrin2.150e-8593.20n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP49_ECTSI[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8201contigE_fasciculatus_S2_contig8201:195..1854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score271.9
Seed ortholog evalue2.6e-70
Seed eggNOG ortholog2880.D7FP49
Model size669
KEGG koko:K17275,ko:K17276
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.actin filament network formation
EggNOG OGsCOG5069@1,KOG0046@2759
Ec32 ortholog descriptionFimbrin
Ec32 orthologEc-10_002480.1
Cds size669
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842482.0229287-CDS-E_fasciculatus_S2_contig8201:194..3861696842482.0229287-CDS-E_fasciculatus_S2_contig8201:194..386Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8201 195..386 +
1696842482.0340838-CDS-E_fasciculatus_S2_contig8201:1377..18541696842482.0340838-CDS-E_fasciculatus_S2_contig8201:1377..1854Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8201 1378..1854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8201.16358.1prot_E_fasciculatus_S2_contig8201.16358.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8201 195..1854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8201.16358.1

>prot_E_fasciculatus_S2_contig8201.16358.1 ID=prot_E_fasciculatus_S2_contig8201.16358.1|Name=mRNA_E_fasciculatus_S2_contig8201.16358.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=223bp
FNQFLGAVGSERQVWSFGAELADGVAWCTLLNAIDPAACPPPDEHDAEAN
AAGAIEAVHKMGVKGVFMTKEALLESDKKQNIMFSAQLMNVFPTIPTHLR
PPPTFKSGAGSSRRGSGRAPFSSTYDSRGGSGVSTADSSMYTGSPAPADA
GGGGRGAPRYVGSSSAPPPAPSPPRSRWSFGFTDNSGSAGEGRVYNYNSD
DEGESGPGCGLGFSIFSCISRN*
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mRNA from alignment at E_fasciculatus_S2_contig8201:195..1854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8201.16358.1 ID=mRNA_E_fasciculatus_S2_contig8201.16358.1|Name=mRNA_E_fasciculatus_S2_contig8201.16358.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1660bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8201:195..1854+ (Ectocarpus fasciculatus EfasUO2)
TTCAATCAGTTCCTCGGCGCTGTGGGAAGCGAGCGACAAGTGTGGAGCTT
CGGTGCGGAGCTGGCGGACGGGGTGGCGTGGTGCACCCTCCTCAACGCGA
TCGACCCAGCCGCGTGCCCCCCGCCCGACGAGCACGACGCGGAGGCGAAC
GCAGCGGGCGCCATCGAGGCCGTGCACAAGATGGGAGTCAAGGTGCGGCG
GGGTTGCGGTTGTTTGTTTCGCCTGTTGGGCCTGTTTGTTTGTTTGTTTT
TTGCGGGAGGGGGCAAAGCGATGGACGGTTGCCATAAAAAAGTATATAGT
GATTGTTCCTCGTGCGGGTGCGAGGGAACGCTGAGGCGTGTTTAGTTTCC
TTGGGAAGGGAGGGAGGGAGGGCCAAGGGGAATTGTATCAACATGGTATG
GTGATAATTTTTGTTTGTTTTTTGGTGGTCGGCTGCAGCCCATAGATCTG
GGCTACATGAGACTCGTCATTTTGTCCCGATGGAGTCGGCAGGCGGTACG
TGGACGATGCACACCTACTGCTGTACTGCTGTACTGCGGTAGAGCTGGGC
GGTTTTGGAGAGCACGCTTATGCGCCCCCACCAGCGTGTGTTACGTGGAA
ATCTTATTCATGTGGTATCCATAGGGACCTATGTGCACGCTTATGCGCCT
CAACCAGCGTGTGTTACGTGGAAATATTATTCATGTGGTATCCATAGGGA
CCTATGTGCGGCTTTTGTGTACGAAGGCAGCAGGGAGAGGGCATCCATCC
GTGTTTTGGCGCCGTACAGCCAGTAGCTGCTGTCCCACCTTATCGGAGAG
GGAGGCATCTACTTGTATCTATCCACCACCCCGACTCACACACGGATCAT
GATGACGGGGGATTTGCACGACCTGTCTCGTATCTTTGTTCCACCGCTAC
TCGCGGGATTCACCAACCTGAGCGCTCCATGTAGATCGATCGAACTGCAA
ATTTGCAGTCTACCGCCATTCCGTAATAGGTCGACTGCGAACAACAAGGA
AGAGCCACATCGTCGCCACATCGTCGCCACATCGTCGCCACCACCGCCGC
ATCCACCATCATCGACACACTCACACTGACACGTCTACCATGACAACCCG
CTTTCGCTACCACGCGCGCGAAAAGCTTCCTCGAGAATCCTAACTTTAAC
ACCTCTCTCTCTCTCCCACGCATAATCTCGCAGGGGGTTTTCATGACGAA
GGAGGCGCTGCTGGAGTCGGACAAGAAGCAGAACATCATGTTCTCCGCCC
AGCTGATGAATGTCTTCCCGACCATCCCGACCCACCTCCGCCCCCCGCCC
ACCTTCAAGAGCGGCGCCGGCAGCAGCAGGCGCGGCAGCGGCAGGGCCCC
GTTCTCCTCCACCTACGACTCGCGCGGCGGCTCCGGCGTCTCGACGGCCG
ACTCGAGCATGTACACGGGCAGCCCGGCCCCCGCGGATGCCGGCGGCGGC
GGCCGGGGGGCTCCGCGGTATGTTGGGTCGTCGTCGGCCCCCCCGCCGGC
CCCGTCCCCCCCCAGGTCGCGGTGGAGCTTCGGGTTCACCGACAACTCGG
GGTCCGCCGGGGAAGGGAGGGTGTACAACTACAACAGCGACGACGAGGGG
GAGTCGGGCCCCGGCTGCGGCCTCGGTTTCAGCATCTTCAGCTGCATCTC
CCGGAACTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8201:195..1854+

>mRNA_E_fasciculatus_S2_contig8201.16358.1 ID=mRNA_E_fasciculatus_S2_contig8201.16358.1|Name=mRNA_E_fasciculatus_S2_contig8201.16358.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=669bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8201:195..1854+ (Ectocarpus fasciculatus EfasUO2)
TTCAATCAGTTCCTCGGCGCTGTGGGAAGCGAGCGACAAGTGTGGAGCTT
CGGTGCGGAGCTGGCGGACGGGGTGGCGTGGTGCACCCTCCTCAACGCGA
TCGACCCAGCCGCGTGCCCCCCGCCCGACGAGCACGACGCGGAGGCGAAC
GCAGCGGGCGCCATCGAGGCCGTGCACAAGATGGGAGTCAAGGGGGTTTT
CATGACGAAGGAGGCGCTGCTGGAGTCGGACAAGAAGCAGAACATCATGT
TCTCCGCCCAGCTGATGAATGTCTTCCCGACCATCCCGACCCACCTCCGC
CCCCCGCCCACCTTCAAGAGCGGCGCCGGCAGCAGCAGGCGCGGCAGCGG
CAGGGCCCCGTTCTCCTCCACCTACGACTCGCGCGGCGGCTCCGGCGTCT
CGACGGCCGACTCGAGCATGTACACGGGCAGCCCGGCCCCCGCGGATGCC
GGCGGCGGCGGCCGGGGGGCTCCGCGGTATGTTGGGTCGTCGTCGGCCCC
CCCGCCGGCCCCGTCCCCCCCCAGGTCGCGGTGGAGCTTCGGGTTCACCG
ACAACTCGGGGTCCGCCGGGGAAGGGAGGGTGTACAACTACAACAGCGAC
GACGAGGGGGAGTCGGGCCCCGGCTGCGGCCTCGGTTTCAGCATCTTCAG
CTGCATCTCCCGGAACTAA
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