mRNA_E_fasciculatus_S2_contig820.16355.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig820.16355.1 vs.
Match: HIT-type (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8J5_ECTSI) HSP 1 Score: 202 bits (515), Expect = 9.210e-60 Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = 2
Query: 62 MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGERPRGRSRAGKAPGNKSKNKGEKDPWQNSSY 406
MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERG+RPRGRSRAGKAPGNK+KNKGEKDPW+ +
Sbjct: 1 MSQSKRKAWDATVQASGHVPTRTKTKRASGRTVVLSKSMRVVDEETRNQVKDARLEALEADNYTEDHGGEQDDEFALDEDDERGDRPRGRSRAGKAPGNKNKNKGEKDPWKERKF 115
BLAST of mRNA_E_fasciculatus_S2_contig820.16355.1 vs.
Match: Zinc (finger, HIT-type n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ72_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 3.010e-17 Identity = 47/76 (61.84%), Postives = 50/76 (65.79%), Query Frame = 1
Query: 517 KSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS 744
K L Q +YE E S P TA A S P R FCSVCGY GLYTCTRCG R+CSSKC E HKETRCLKFA+
Sbjct: 116 KPLAQWVYEAGYERSNGPNYLTAA---AQPSSLPTRCFCSVCGYWGLYTCTRCGMRYCSSKCAETHKETRCLKFAT 188
BLAST of mRNA_E_fasciculatus_S2_contig820.16355.1 vs.
Match: Aste57867_13128 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXM9_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 1.900e-15 Identity = 42/79 (53.16%), Postives = 51/79 (64.56%), Query Frame = 1
Query: 508 RKFKSLHQVLYELTNELSAYPGGATAVSIEAPV--SKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKF 738
RK KSL Q ++E +++ P +T + A V S HPPR FC VCG YTC RCGSRFCS +C +QHKET CLKF
Sbjct: 112 RKVKSLRQWIFEECGDVTNDPLSSTPTYLSAAVKPSTHPPRHFCCVCGLFSSYTCGRCGSRFCSVRCGDQHKETGCLKF 190
BLAST of mRNA_E_fasciculatus_S2_contig820.16355.1 vs.
Match: HIT-type (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0J0_GLOUD) HSP 1 Score: 78.6 bits (192), Expect = 3.240e-13 Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1
Query: 490 KAAGKERKFKSLHQVLYELTNELSAY-PGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKF 738
KA K+ K KSL Q+++E A P +++ A S P R FC VCG+ +Y+CTRCGSR+C KC ++HKE+ CLKF
Sbjct: 115 KAKAKKWKVKSLAQLVFEEHGAGDAVDPNMPNYITVAAAASTRPARRFCCVCGFFAVYSCTRCGSRYCRIKCGDEHKESSCLKF 198
BLAST of mRNA_E_fasciculatus_S2_contig820.16355.1 vs.
Match: HIT-type (domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8S1_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 3.590e-13 Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 1
Query: 475 ATAVV-KAAGKER---KFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKF 738
AT VV +A G+ R K KSL Q+++E + + + +++ P K PPR FC+VCG+ Y C RCGS+FCS +C +QHKET CLKF
Sbjct: 99 ATPVVPQALGRRRIVRKVKSLRQLIFEECGDGESSIPNYISAAVKPP--KEPPRHFCAVCGHFSCYNCGRCGSKFCSVQCGDQHKETGCLKF 188
BLAST of mRNA_E_fasciculatus_S2_contig820.16355.1 vs.
Match: HIT-type (domain-containing protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383V4S6_TETOB) HSP 1 Score: 77.4 bits (189), Expect = 4.920e-13 Identity = 46/98 (46.94%), Postives = 57/98 (58.16%), Query Frame = 1
Query: 448 RTRCPKLQRATAVVKAAGKERKFKSLHQVLYELTNELSAYPGGATAVSIEA-PVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKF 738
R R P +R T + AG+ R KS Q L E + L A G +S A P + PR FCSVCG+ YTC+RCGS++CS KC+ H ETRCLKF
Sbjct: 81 RRRKPAAKRRT---RGAGEGRAVKSF-QRLVEESGMLDAPAGDVNYLSAAAGPSVFYVPRKFCSVCGFLSSYTCSRCGSKYCSRKCFTVHTETRCLKF 174
BLAST of mRNA_E_fasciculatus_S2_contig820.16355.1 vs.
Match: HIT-type (domain-containing protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AGH6_STYLE) HSP 1 Score: 77.8 bits (190), Expect = 5.660e-13 Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 1
Query: 499 GKERKFKSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFA 741
GK K +Q Y++ +L+ +S+ A SK P R FCSVCGY+ Y CTRCG R+C+ KC E H+ETRC+KFA
Sbjct: 120 GKLDLAKIFYQEFYDVEQQLNFQ----NYLSVAAKPSKFPRRFFCSVCGYNSKYQCTRCGLRYCTMKCGETHRETRCIKFA 196
BLAST of mRNA_E_fasciculatus_S2_contig820.16355.1 vs.
Match: HIT-type (domain-containing protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NDU2_HALGN) HSP 1 Score: 74.7 bits (182), Expect = 6.290e-13 Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 517 KSLHQVLYELTNELSAYPGGATAVSIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFA 741
K +Q YE +E ++ +S+ A SK P R FCSVCGY+ Y CTRCG R+C+ +C E H+ETRC+KFA
Sbjct: 24 KIFYQEFYEGNSEENSM-NFHNYLSVAARPSKFPVRFFCSVCGYNSKYQCTRCGLRYCTMRCGETHRETRCIKFA 97
BLAST of mRNA_E_fasciculatus_S2_contig820.16355.1 vs.
Match: Zinc (finger HIT domain-containing 1 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7RAX1_BRAPC) HSP 1 Score: 75.9 bits (185), Expect = 2.340e-12 Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1
Query: 589 SIEAPVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS 744
SI P +K P R FCSVCG++ YTC +CGSR+CS+KC + HK+TRCLK+ +
Sbjct: 140 SISVPDTKFPKRKFCSVCGFYSNYTCVQCGSRYCSTKCLQTHKDTRCLKWTA 191
BLAST of mRNA_E_fasciculatus_S2_contig820.16355.1 vs.
Match: SWR1 (complex subunit 6 n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PCB0_9CHLO) HSP 1 Score: 75.5 bits (184), Expect = 2.480e-12 Identity = 35/65 (53.85%), Postives = 40/65 (61.54%), Query Frame = 1
Query: 556 LSAYPGGATAVSIEA--PVSKHPPRAFCSVCGYHGLYTCTRCGSRFCSSKCYEQHKETRCLKFAS 744
L A P G + A P + H R FC+VCG+ YTC RCGSRFCS +CY H ETRCLKF S
Sbjct: 115 LEAQPAGVPSYLTAAVGPPTTHAARKFCTVCGFESPYTCVRCGSRFCSKRCYVVHTETRCLKFIS 179 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig820.16355.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig820.16355.1 >prot_E_fasciculatus_S2_contig820.16355.1 ID=prot_E_fasciculatus_S2_contig820.16355.1|Name=mRNA_E_fasciculatus_S2_contig820.16355.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=337bp MPRCKPAVMSPHAQKRNGLQDGRWCSVSLCELWTKKREIRSKTRVWKRWKback to top mRNA from alignment at E_fasciculatus_S2_contig820:4511..8015- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig820.16355.1 ID=mRNA_E_fasciculatus_S2_contig820.16355.1|Name=mRNA_E_fasciculatus_S2_contig820.16355.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3505bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig820:4511..8015- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig820:4511..8015- >mRNA_E_fasciculatus_S2_contig820.16355.1 ID=mRNA_E_fasciculatus_S2_contig820.16355.1|Name=mRNA_E_fasciculatus_S2_contig820.16355.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1011bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig820:4511..8015- (Ectocarpus fasciculatus EfasUO2)back to top |