mRNA_E_fasciculatus_S2_contig8195.16344.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8195.16344.1
Unique NamemRNA_E_fasciculatus_S2_contig8195.16344.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8195.16344.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8195contigE_fasciculatus_S2_contig8195:3098..5274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size334
Hectar predicted targeting categorysignal peptide
Exons4
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842480.4420798-UTR-E_fasciculatus_S2_contig8195:3097..31041696842480.4420798-UTR-E_fasciculatus_S2_contig8195:3097..3104Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8195 3098..3104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842480.4531298-CDS-E_fasciculatus_S2_contig8195:3104..32041696842480.4531298-CDS-E_fasciculatus_S2_contig8195:3104..3204Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8195 3105..3204 +
1696842480.4631517-CDS-E_fasciculatus_S2_contig8195:3598..36401696842480.4631517-CDS-E_fasciculatus_S2_contig8195:3598..3640Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8195 3599..3640 +
1696842480.4749782-CDS-E_fasciculatus_S2_contig8195:4074..41791696842480.4749782-CDS-E_fasciculatus_S2_contig8195:4074..4179Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8195 4075..4179 +
1696842480.488236-CDS-E_fasciculatus_S2_contig8195:5194..52741696842480.488236-CDS-E_fasciculatus_S2_contig8195:5194..5274Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8195 5195..5274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8195.16344.1prot_E_fasciculatus_S2_contig8195.16344.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8195 3105..5274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8195.16344.1

>prot_E_fasciculatus_S2_contig8195.16344.1 ID=prot_E_fasciculatus_S2_contig8195.16344.1|Name=mRNA_E_fasciculatus_S2_contig8195.16344.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=109bp
MPRWGGDRTAAAASTRTSSKMFLASTAVLILLSDATTTSSADAPAPSPGT
MAPAAVPVSATASPAPTTAATYATAAPSSASTEIVTTCSNGVPGVENGMG
TVCCPIECG
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mRNA from alignment at E_fasciculatus_S2_contig8195:3098..5274+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8195.16344.1 ID=mRNA_E_fasciculatus_S2_contig8195.16344.1|Name=mRNA_E_fasciculatus_S2_contig8195.16344.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2177bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8195:3098..5274+ (Ectocarpus fasciculatus EfasUO2)
GTCGGGTATGCCTCGGTGGGGTGGAGATCGTACCGCTGCTGCTGCGTCTA
CCCGCACCTCATCCAAGATGTTTCTAGCTTCAACCGCAGTGCTGATCCTG
CTGTCAGGCAAGAGGCTGTGCTTCACGGAAGAACGCACATAGTACAGGTG
GCGTCCAAACCTGTATCGTGTGTGTGGGCTACAATTGGCCGCTGTATATT
GTAGGGATTCTCACCCGTGCTTGCAAATGGTGCTCAAGTGCTTGTGTTTG
GTAAGATGTTGAGCATGCAACGATCGCCGCCAACATACCCAGTCTATACG
TTCCTGTTGACCCCCGCTGTGTATTCTGCTTGTTAGGAAATTTAATTCAT
GCAGATCTTCTTTCATGATTACTGCTTCTAGCTTGATTGCGCTCAGAAAG
GTCTTCCATCCCCATTCGATGCCTGTTGCTTCTGCCGCGCGGCTACCACG
GCCTCGCCACGGGACCTACCTCCCGCGCCGTGTGCGCCGCGTGTTCATCA
GATGCGACCACCACTTCCTCCGCCGACGCACCAGCACCATCACGTGAGTT
TTCCTTTGGTTTCTCATACAACCGATCAAGCGTACCGTTCGGTACACACA
GCACCGTCGGTTGTTGTTCTCGTTGGACGGAAATTCAGACGGCGAATGCG
TCACTGCGTGGTTGTCTTGAACTCAAATTAGCGATCGGTTTGCTGCTCTG
GGATCGGGGTGTATGTGTGGAAAGGGGTTCCAGATGGTGTTTTTGTCATG
TTTATCAGGGGTGTAGTGAGCGTAGTACAGCTTGCAGACCATGAGCTTGT
GGTCTACTGGTCCCGAAATCTCGGGCGCAGCAGGGCCGGTGAAAATGGAT
GTCCTCTTGACGGACGCAGGACGACATACATATCTTGTAAGACGCCCTAC
CCGTTGGCACCCATTAATCCTCGTCTCCTTCTCATCCCGCGGTGGTCCAC
GTACGCTCGTGCCGCTCTCGGCGACAGCCGGTACAATGGCACCTGCCGCC
GTCCCGGTGTCAGCCACCGCAAGCCCGGCGCCAACCACAGCCGCCACATA
CGCAACGGCCGCCCCTAGTTCGGCCTCCACAGGTGTGGCATGGGGTATAT
CGTTTTCCTCCAAGCAACCCCGTTTCTTGGCCTAGTTTCCCTGGCGACGC
TTTCGATACCGGGTTGTGTAGACCAGGCGAGCCGCTTTTCCTCATGTCCA
AGGCAAGTTTATGCGATCGGGGTTGGTTCGCGCTATTGTTGTCGGGCGCA
AGCGCTCTCTCATCTACGCGAGCCGCTTGCTTTTAGCGAAATGCGCCCCA
AGCAGGAGTTGCACCTCAGCGATGACAGATATTGACTACAGGTCGGATTC
GGTTAACTCAAACACAAAAATAACGATGCCCTCGTTTTGCTTTGTTGAAC
ATTGTCCGACGTACGCTTGGGAGGGGGTCAATGAAGTGTAGTCATTGGAG
TTTGCCGTTTGGGGTTAAATGAGGCAGTCACAGACGTATCAACATCCATA
TAAATGGTACGCAGCTGTCATGCGTCTACCAGAGCGACGACGCCCATGAC
GAGCTCCTCTCGAGTCATAGAGAGAGCGCCTCAACACTTTTCCTCGTGCA
GCAGCCCGAGCTTGTGTTTGGTGTGTTTTTTCAGATGCCGTGGGTATTCG
GTTGTAAAAGACGAAAGACATTTCATATGTGTAAACAAAGGCTAGCCGGC
GGCCATGCGCGCAAACCACGCCCATCTCAGACATGAGAGAGACTCTGCGA
AGAATGAAGCCGTGAGCGCTAACGGCAGGCACTTGCAGCTCCACGGACTT
GTCTTACTAAAACCCATGGCGGATGCCGTTTCTTGCCGTGGCGAACACTC
GAGATTTGTGATCGGAACAGTCCAGAACTTTGAGGAAGAATAAACATAAG
AACCTTCCCCCCCTCGTAGTTCCGAACGGCTCGATCGACGAGGTGACAGA
CCATGAGCTTTGCCTGAAGACTTCGGGGCTCGAAAAGCTCATCTTGTCTA
CACCCTCAGTCGCGATGACCGCCAACACCTCACCCGCACTATGTACTCTC
CTGTTCCCGCAATCTCACTTGCCCTCTTCGCTTCTTTGAATGAGCAGAAA
TTGTCACGACGTGCAGCAACGGTGTCCCAGGGGTCGAGAACGGAATGGGA
ACCGTATGCTGCCCGATTGAGTGCGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8195:3098..5274+

>mRNA_E_fasciculatus_S2_contig8195.16344.1 ID=mRNA_E_fasciculatus_S2_contig8195.16344.1|Name=mRNA_E_fasciculatus_S2_contig8195.16344.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=327bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8195:3098..5274+ (Ectocarpus fasciculatus EfasUO2)
ATGCCTCGGTGGGGTGGAGATCGTACCGCTGCTGCTGCGTCTACCCGCAC
CTCATCCAAGATGTTTCTAGCTTCAACCGCAGTGCTGATCCTGCTGTCAG
ATGCGACCACCACTTCCTCCGCCGACGCACCAGCACCATCACCCGGTACA
ATGGCACCTGCCGCCGTCCCGGTGTCAGCCACCGCAAGCCCGGCGCCAAC
CACAGCCGCCACATACGCAACGGCCGCCCCTAGTTCGGCCTCCACAGAAA
TTGTCACGACGTGCAGCAACGGTGTCCCAGGGGTCGAGAACGGAATGGGA
ACCGTATGCTGCCCGATTGAGTGCGGC
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