mRNA_E_fasciculatus_S2_contig8194.16343.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8194.16343.1
Unique NamemRNA_E_fasciculatus_S2_contig8194.16343.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8194.16343.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8194contigE_fasciculatus_S2_contig8194:1995..2874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size186
Hectar predicted targeting categoryother localisation
Exons3
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842480.3855314-CDS-E_fasciculatus_S2_contig8194:1995..20411696842480.3855314-CDS-E_fasciculatus_S2_contig8194:1995..2041Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8194 1996..2041 -
1696842480.3972645-CDS-E_fasciculatus_S2_contig8194:2366..24681696842480.3972645-CDS-E_fasciculatus_S2_contig8194:2366..2468Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8194 2367..2468 -
1696842480.4084005-CDS-E_fasciculatus_S2_contig8194:2839..28741696842480.4084005-CDS-E_fasciculatus_S2_contig8194:2839..2874Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8194 2840..2874 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8194.16343.1prot_E_fasciculatus_S2_contig8194.16343.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8194 1996..2874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8194.16343.1

>prot_E_fasciculatus_S2_contig8194.16343.1 ID=prot_E_fasciculatus_S2_contig8194.16343.1|Name=mRNA_E_fasciculatus_S2_contig8194.16343.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=61bp
QRQTGEYGDAAKEEEKRLEETDCQIREKESMLLKVRETITGYHHMRERFD
MLVGKIGDLEQ
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mRNA from alignment at E_fasciculatus_S2_contig8194:1995..2874-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8194.16343.1 ID=mRNA_E_fasciculatus_S2_contig8194.16343.1|Name=mRNA_E_fasciculatus_S2_contig8194.16343.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=880bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8194:1995..2874- (Ectocarpus fasciculatus EfasUO2)
CAGAGGCAGACAGGGGAGTACGGGGACGCAGCCAAGTGAGTCGGTCAATG
GTAAACAGTTTGCTTGATGCACCTTTGTTGTTTTCTTTACTGTTGCGATG
AGTGAAAAGCAGAGAGGAGAGGGATACAACTGTCAGTACCTATACTTACA
GAGCTCGTTTTTTTTTTTGTGTCGTGAGCACACCACTTCTTGTGCACGCA
AAAACGCCGGCTCGTATCTATTTATTTTGTGTTATAGAAATAATTGAACC
TCTTGTCTTCCAAACGTCCGGGATATATGATCGTTCATAGTGTCTTGTGT
TTCGCTTGTTATCTTGTGTTTTTTCTCAGGGAGGGAGAGAAGGGCCTGGA
ATTCTTTCATTGCACTACGTTTTCCCCTTCTTTTATTTTTTTGTATGCTT
TTTCAGGGAGGAAGAGAAGCGCCTTGAAGAGACCGACTGTCAGATCAGGG
AGAAGGAATCCATGCTGCTGAAGGTCCGGGAGACGATTACCGGATACCAC
CACATGAGGTGGGTCCCGTTACGTTACGTTACGTTACGTTTCGCGTCGTG
CCGCCGTTTCATGTCCTTCCCGTCACAGCTGTTGGTGTTTCTGCGAAGCA
TTACCACAACTATTGCATAGCCCCCCCGTGCTCCGTCACAGCTTTGCGGG
GATGCGAGGTCAATGGTCTAACGACTACGACATGCACGGCGGTTATGAAC
ACACCTCCCCCACGTGCTTCGTCCAGGCTTTGAAGGGATGCGAGGTGAAA
GGTCTGACGACTATGGCATGCACGGCTTTGAGTACCCCCCCCCCCCTCCC
CCCAATTGATATGAATGTTCTGTGTTTGCCCAGGGAGCGGTTCGACATGC
TAGTCGGGAAGATCGGGGACCTCGAGCAGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8194:1995..2874-

>mRNA_E_fasciculatus_S2_contig8194.16343.1 ID=mRNA_E_fasciculatus_S2_contig8194.16343.1|Name=mRNA_E_fasciculatus_S2_contig8194.16343.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=183bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8194:1995..2874- (Ectocarpus fasciculatus EfasUO2)
CAGAGGCAGACAGGGGAGTACGGGGACGCAGCCAAGGAGGAAGAGAAGCG
CCTTGAAGAGACCGACTGTCAGATCAGGGAGAAGGAATCCATGCTGCTGA
AGGTCCGGGAGACGATTACCGGATACCACCACATGAGGGAGCGGTTCGAC
ATGCTAGTCGGGAAGATCGGGGACCTCGAGCAG
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