mRNA_E_fasciculatus_S2_contig817.16325.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig817.16325.1
Unique NamemRNA_E_fasciculatus_S2_contig817.16325.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig817.16325.1 vs.
Match: Retinitis (pigmentosa 2 (X-linked recessive) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRD4_ECTSI)

HSP 1 Score: 587 bits (1513), Expect = 1.210e-207
Identity = 317/399 (79.45%), Postives = 326/399 (81.70%), Query Frame = 1 
Query:   79 AAGGGSITRDAVVKGNLNPSDFILSRKQKEVIVREPGSIGGQQFIVEECSECEVYLLDHTAALTIDLCTDCRVFAGPCESRRDTTKISFCMDCTVVVACQQFRARDCTDCTFFLFSATQPVIESSAGLRFACYTLDYFSLAGQFAAAKLSVWNNKWSQIYNFTGGGEGDWSCLPEGSHHRDFTTRGLPRASRQRVGYTENTHGAVVPITAGIRDFTEAEETCFIVVMPGHIDAVLGKLLAVGGGGDSPISATTSRLLRTKLFRPQMAQSKPFFSGAPSSMAEMASSFPVLGMQWAGPGSAEAAVSLLAAAGVSIPPSPAXXXXXXXNESSDTKGKTPKGKTSHSTDIGARNGTSEYYMVAXXXXXXXXXDGRSGRESPAAKAKVFFEQWDEDKGTPLGS 1275
            AAGGGS+TR A+ KGNLNPSDFI S KQKEVIVREPGSIGGQQFIVEECSECEVYLLDHTAALTIDLC       GPC               TVVVACQQFRARD    TFFLFSATQPVIESS GLRF CYTLDYFSLAGQFAAAKLSVWNN+WSQI+NFTGGG+GDWSCLPEGSHHRDFTTR LP ASRQRVGYTENTHGAVVPITAG+R FTEAEETCFIVVMPGHIDAVLGKLLAVGGGGDSPISATTSRLLRTKLFRPQMAQSK FFSGAPSSMAE+ASSFPVLGMQWAGPGSAEAAVSLLAAAG        XXXXXXX                +S DIGA NGTSEYYMVA         DGRSG ES AAKA+VFFEQWDEDKGTPLGS
Sbjct:   23 AAGGGSLTRGALDKGNLNPSDFIFSCKQKEVIVREPGSIGGQQFIVEECSECEVYLLDHTAALTIDLCXXXXXXXGPCXXXXXXXXXXXX---TVVVACQQFRARDXXXXTFFLFSATQPVIESSVGLRFGCYTLDYFSLAGQFAAAKLSVWNNRWSQIHNFTGGGDGDWSCLPEGSHHRDFTTRSLPEASRQRVGYTENTHGAVVPITAGMRGFTEAEETCFIVVMPGHIDAVLGKLLAVGGGGDSPISATTSRLLRTKLFRPQMAQSKTFFSGAPSSMAELASSFPVLGMQWAGPGSAEAAVSLLAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSADIGAGNGTSEYYMVAGRGDGGGNDDGRSGSESSAAKARVFFEQWDEDKGTPLGS 418
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BLAST of mRNA_E_fasciculatus_S2_contig817.16325.1 vs.
Match: C-CAP/cofactor (C-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z2_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 2.280e-52
Identity = 98/138 (71.01%), Postives = 100/138 (72.46%), Query Frame = 1 
Query:   79 AAGGGSITRDAVVKGNLNPSDFILSRKQKEVIVREPGSIGGQQFIVEECSECEVYLLDHTAALTIDLCTDCRVFAGPCESRRDTTKISFCMDCTVVVACQQFRARDCTDCTFFLFSATQPVIESSAGLRFACYTLDYF 492
            AAGGGS+TR  V KGNLNPSDFI SRKQKEVIVREPGSIGGQQFIVEECSECEVYLLDHTAALTIDL                             VACQQFRARD    TFFLFSATQPV+ESS GLRFACYTLDYF
Sbjct:   23 AAGGGSVTRGTVDKGNLNPSDFIFSRKQKEVIVREPGSIGGQQFIVEECSECEVYLLDHTAALTIDLXXXXXXXXXXXXXXXXXXXXXXXXX---XVACQQFRARDXXXXTFFLFSATQPVVESSVGLRFACYTLDYF 157
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BLAST of mRNA_E_fasciculatus_S2_contig817.16325.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEW1_PYTOL)

HSP 1 Score: 184 bits (466), Expect = 1.570e-50
Identity = 100/266 (37.59%), Postives = 149/266 (56.02%), Query Frame = 1 
Query:  127 LNPSDFILSRKQK-EVIVREPGSIGGQQFIVEECSECEVYLLDHTAALTIDLCTDCRVFAGPCESRRDTTKISFCMDCTVVVACQQFRARDCTDCTFFLFSATQPVIESSAGLRFACYTLDYFSLAGQFAAAKLSVWNNKWSQIYNFTGGGEGDWSCLPEGSHHRDF-------TTRGLPRASRQRVGYTENTHGAVVPITAGIRDFTEAEETCFIVVMPGHIDAVLGKLLAVGG-GGDSPISATTSRLLRTKLFRPQMAQSKPFF 897
            L   DFI S  Q    +V+ PGS+ GQQF++E C +C++++LDH  ++ ID C +CR+  GPC +   +  +  C DCT+V A QQFR RDC     +L+SAT+P+IE+S+ +RFAC+ L YF+L  QF AAK SVWNN+WS+IYNFT    G W  +   +H           T  GLP  + + VG T      VVP+T G+    E +    ++ +  H   ++  + A+    G + +  T   LLR++  +    Q+K  F
Sbjct:   32 LKREDFIFSNVQSASFLVKLPGSVNGQQFLIEACRDCDIFVLDHCTSVQIDDCVNCRIVIGPCNA---SLFLRNCRDCTLVCAVQQFRTRDCEKIDVYLYSATEPIIETSSQMRFACFPLAYFNLQQQFDAAKFSVWNNRWSEIYNFTPE-HGAWKAISTQTHISPLAEAMSTPTLWGLPTQTAEEVGLTVEAAKLVVPLTGGVSARREDDNLAIVIFVQAHAHLMMEFVAAIAKQAGAAGVKETV--LLRSRQMKFSDDQAKHLF 291
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig817.16325.1 vs.
Match: Protein (XRP2 n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=V9G2C2_PHYPR)

HSP 1 Score: 181 bits (460), Expect = 1.800e-49
Identity = 106/277 (38.27%), Postives = 151/277 (54.51%), Query Frame = 1 
Query:  127 LNPSDFILSRKQK-EVIVREPGSIGGQQFIVEECSECEVYLLDHTAALTIDLCTDCRVFAGPCESRRDTTKISFCMDCTVVVACQQFRARDCTDCTFFLFSATQPVIESSAGLRFACYTLDYFSLAGQFAAAKLSVWNNKWSQIYNFTGGGEGDWSCLPEGSHH-------RDFTTRG------LPRASRQRVGYTENTHGAVVPITAGIRDFTEAEETCFIVVMPGHIDAVLGKLLAVG----GGGDSPISATTSRLLRTKLFRPQMAQSKPFFSG 903
            L   DFI S  Q    + + PGSI GQQF++E+C  C+++LLDH  ++ ID C +CR+  GPCES   +  +  C  CTVV A QQFRARDC D + +L+SAT+P+IE S+GLRFAC+ L YFSL  QF  AK S WNNKWS++++FT    G W  LP   H        +D    G      +P  + + +G + +    VVPIT G+    + E T F+     +   ++  + A+     G  D P     + L+RT+  +    Q+   F G
Sbjct:   41 LKREDFIFSNIQTASFLAKLPGSINGQQFLIEDCHNCDIFLLDHCTSVQIDACINCRIVVGPCES---SVFLRNCKRCTVVCAVQQFRARDCEDVSVYLYSATEPIIEMSSGLRFACFPLTYFSLQQQFRQAKFSPWNNKWSELFDFTPD-HGGWKPLPMRPHESPLAEMMQDKENNGARSLWKMPSWTAEELGLSVDLPQLVVPITNGLCARKDGEPTLFVCFAAPNEALMMDFVTAIATKKNGDSDDP-----TLLIRTRQMQLTGDQAAALFPG 308
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig817.16325.1 vs.
Match: XRP2-like (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BH13_PYTIN)

HSP 1 Score: 179 bits (454), Expect = 1.070e-48
Identity = 94/226 (41.59%), Postives = 131/226 (57.96%), Query Frame = 1 
Query:  127 LNPSDFILSRKQKEVIVRE-PGSIGGQQFIVEECSECEVYLLDHTAALTIDLCTDCRVFAGPCESRRDTTKISFCMDCTVVVACQQFRARDCTDCTFFLFSATQPVIESSAGLRFACYTLDYFSLAGQFAAAKLSVWNNKWSQIYNFTGGGEGDWSCLPEGSHHRDFT------TRG---------LPRASRQRVGYTENTHGAVVPITAGIRDFTEAEETCFIVV 756
            L   D+I S       + + PGSI GQQF++E CSEC++++LDH  A+ ID C +CR+  GPCES   +  +  C  CT+V A QQFR RDC D   +L+S+T+P+IESS  +RFACY + YFSL  QF  AK SVWNN+WS++YNFT    G W  L    H    T      ++G         +P  S Q +G + N    VVP+++G+    E + T  ++V
Sbjct:   39 LKKEDYIFSNIHAPTFLAKLPGSINGQQFLIENCSECDIFVLDHCTAVQIDDCVNCRIVIGPCES---SLFLRNCKQCTIVCAVQQFRTRDCEDIDVYLYSSTEPIIESSTRMRFACYPMTYFSLQHQFDQAKFSVWNNRWSEVYNFTPD-HGSWKALSTSCHESPLTVCVSASSQGCDDGLALWKMPSWSAQELGLSINVDQLVVPLSSGMTAHRE-DATAVVIV 259
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BLAST of mRNA_E_fasciculatus_S2_contig817.16325.1 vs.
Match: Protein (XRP2 n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZD48_PHYSP)

HSP 1 Score: 176 bits (447), Expect = 1.210e-47
Identity = 95/222 (42.79%), Postives = 128/222 (57.66%), Query Frame = 1 
Query:  127 LNPSDFILSRKQK-EVIVREPGSIGGQQFIVEECSECEVYLLDHTAALTIDLCTDCRVFAGPCESRRDTTKISFCMDCTVVVACQQFRARDCTDCTFFLFSATQPVIESSAGLRFACYTLDYFSLAGQFAAAKLSVWNNKWSQIYNFTGGGEGDWSCLPEGSHHRDFT----------TRGL---PRASRQRVGYTENTHGAVVPITAGIRDFTEAEETCFI 750
            L   DFI S  Q    + + PGSI GQQF++E+C  C+++LLDH  ++ ID C +CR+  GPCES   +  +  C  CTVV A QQFR RDC D   +L+SAT+P+IE+S+ LRFAC+ L YFSL  QF  AK S WNNKWS+I++FT    G W+ LP   H                R L   P  + + +G + +    VVPIT+G+    E   T F+
Sbjct:   47 LKREDFIFSNIQTASFLAKLPGSINGQQFLIEDCHNCDIFLLDHCTSVQIDACVNCRIVVGPCES---SVFLRDCKKCTVVCAAQQFRTRDCEDLDVYLYSATEPIIETSSRLRFACFPLTYFSLQQQFRQAKFSAWNNKWSEIFDFTPD-HGGWTPLPMHPHESPLAEMMPEKENNGARSLWKMPSWTAEELGLSVDLPQLVVPITSGLCARKEDAPTVFV 264
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BLAST of mRNA_E_fasciculatus_S2_contig817.16325.1 vs.
Match: Protein (XRP2 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T3Q5_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.090e-47
Identity = 108/275 (39.27%), Postives = 148/275 (53.82%), Query Frame = 1 
Query:    1 MGNL-------FGKDCPEPKKPKKHGAGVGWNPAAGGGSITRDAVVKGNLNPSDFILSRKQK-EVIVREPGSIGGQQFIVEECSECEVYLLDHTAALTIDLCTDCRVFAGPCESRRDTTKISFCMDCTVVVACQQFRARDCTDCTFFLFSATQPVIESSAGLRFACYTLDYFSLAGQFAAAKLSVWNNKWSQIYNFTGGGEGDWSCLPEGSHHRDFT----------TRGL---PRASRQRVGYTENTHGAVVPITAGI---RDFTEAEETCFIV 753
            MGN+        G D  +P+   K  A  G + AA   +  +D  +K      DFI S  Q    + + PGSI GQQF++E+C  C+++LLDH  ++ ID C +CR+  GPCES   +  +  C  CTVV A QQFR RDC D + +L+SAT+P+IE+S+GLRFAC+ L YFSL  QF   K S WNNKWS+I++FT    G W  LP   H                R L   P  + + +G + +    VVPIT+G+   +D       CF V
Sbjct:    1 MGNICHAGPPALGADA-KPRSKSKSRASTGSSKAAP--TFGKDPTLK----REDFIFSNIQTASFLAKLPGSINGQQFLIEDCHNCDIFLLDHCTSVQIDACVNCRIVVGPCES---SVFLRNCKRCTVVCAVQQFRTRDCEDVSVYLYSATEPIIETSSGLRFACFPLTYFSLQQQFRQVKFSPWNNKWSEIFDFTPD-HGGWKPLPMRPHESPLAEMMPEKENNGARSLWKMPSWTAEELGLSVDLPQLVVPITSGLCARKDDVPTLFVCFAV 264
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig817.16325.1 vs.
Match: Protein (XRP2 n=3 Tax=Clupeocephala TaxID=186625 RepID=A0A3Q3JN19_MONAL)

HSP 1 Score: 173 bits (439), Expect = 1.360e-46
Identity = 100/287 (34.84%), Postives = 151/287 (52.61%), Query Frame = 1 
Query:  127 LNPSDFILSRKQKEVIVREPGSIGGQQFIVEECSECEVYLLDHTAALTIDLCTDCRVFAGPCESRRDTTKISFCMDCTVVVACQQFRARDCTDCTFFLFSATQPVIESSAGLRFACYTLDYFSLAGQFAAAKLSVWNNKWSQIYNFTG-GGEGDWSCLPEGSHHRDFTTRGLPRASRQRVGYTENTHGAVVPITAGIRDFTEAEETCFIVVMPGHIDAVLGKLLAVGGGGDSPISATTSRLLRTKLFRPQMAQSKPFFSGAPSSMAEMASSFPVLGMQWAGPGSAEA 984
            ++P D++L+  +   + R PG + GQQF+++EC  C +Y+ DH+A +TID C +C +  GP +    +     C D   VVACQQFR RDC     FL  ATQP+IESS G++F C+   Y  LA  F  A LS++NN WS I++FT   GE +WS LPE S   DF     P +  + V  + ++  ++VP+T G R   ++EE+C  V   G       + L         ++A    L++TK    +    K  F  +   + E  +  PV+ ++  G G  EA
Sbjct:   49 VDPKDYMLTGLKDVTVGRLPGKLNGQQFVIQECENCNIYVFDHSATITIDDCVNCCIVLGPVKG---SVFFRDCKDIKCVVACQQFRTRDCKKMEVFLCCATQPIIESSTGMKFGCFQYYYPELAFHFKDAGLSIFNNNWSNIHDFTPVSGENNWSLLPEASAVLDFVPAPDPESEFKSVRISTDSTRSIVPLTTGGRR-KDSEESCLFVFFAGEYTTANARKLI------DEVTAKGFVLIQTKEVSMRPEDMKRVFQNSAEDLTEWITKGPVIALELNGDGVVEA 325
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig817.16325.1 vs.
Match: Cyclin-A1-2 (n=4 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9W0_PHYNI)

HSP 1 Score: 181 bits (460), Expect = 1.400e-46
Identity = 106/277 (38.27%), Postives = 151/277 (54.51%), Query Frame = 1 
Query:  127 LNPSDFILSRKQK-EVIVREPGSIGGQQFIVEECSECEVYLLDHTAALTIDLCTDCRVFAGPCESRRDTTKISFCMDCTVVVACQQFRARDCTDCTFFLFSATQPVIESSAGLRFACYTLDYFSLAGQFAAAKLSVWNNKWSQIYNFTGGGEGDWSCLPEGSHH-------RDFTTRG------LPRASRQRVGYTENTHGAVVPITAGIRDFTEAEETCFIVVMPGHIDAVLGKLLAVG----GGGDSPISATTSRLLRTKLFRPQMAQSKPFFSG 903
            L   DFI S  Q    + + PGSI GQQF++E+C  C+++LLDH  ++ ID C +CR+  GPCES   +  +  C  CTVV A QQFRARDC D + +L+SAT+P+IE S+GLRFAC+ L YFSL  QF  AK S WNNKWS++++FT    G W  LP   H        +D    G      +P  + + +G + +    VVPIT G+    + E T F+     +   ++  + A+     G  D P     + L+RT+  +    Q+   F G
Sbjct:   41 LKREDFIFSNIQTASFLAKLPGSINGQQFLIEDCHNCDIFLLDHCTSVQIDACINCRIVVGPCES---SVFLRNCKRCTVVCAVQQFRARDCEDVSVYLYSATEPIIEMSSGLRFACFPLTYFSLQQQFRQAKFSPWNNKWSELFDFTPD-HGGWKPLPMRPHESPLAEMMQDKENNGARSLWKMPSWTAEELGLSVDLPQLVVPITNGLCARKDGEPTLFVCFAAPNEALMMDFVTAIATKKNGDSDDP-----TLLIRTRQMQLTGDQAAALFPG 308
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig817.16325.1 vs.
Match: Protein (XRP2 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FTT6_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.640e-46
Identity = 111/271 (40.96%), Postives = 144/271 (53.14%), Query Frame = 1 
Query:    1 MGNL-------FGKDCPEPKKPKKHGAGVGWNPAAGGGSITRDAVVKGNLNPSDFILSRKQK-EVIVREPGSIGGQQFIVEECSECEVYLLDHTAALTIDLCTDCRVFAGPCESRRDTTKISFCMDCTVVVACQQFRARDCTDCTFFLFSATQPVIESSAGLRFACYTLDYFSLAGQFAAAKLSVWNNKWSQIYNFTGGGEGDWSCLPEGSHHRDFT----------TRGL---PRASRQRVGYTENTHGAVVPITAGIRDFTEAEETCFI 750
            MGN+        G D P P K K   +      A+  GS  RD  +K      DFI S  Q    + + PGSI GQQF++E+C  C+++LLDH  ++ ID C +CRV  GPCES   +  +  C  CTVV   QQFRA DC D   FL+SAT+PVIE+S+ LRFAC+ L YFSL  QF  AK S WNNKWS+I++FT    G W+ LP   H                R L   P  + + +G + +    VVPIT G+    E   T F+
Sbjct:    1 MGNICHAGPPALGADAP-PAKAKTPAS------ASATGSFGRDPTLK----REDFIFSNIQTASFLAKLPGSINGQQFLIEDCHNCDIFLLDHCTSVQIDGCVNCRVVVGPCES---SVFLRDCKRCTVVCVAQQFRACDCEDMDVFLYSATEPVIETSSRLRFACFPLTYFSLQQQFRQAKFSAWNNKWSEIFDFTPDC-GGWTPLPMHPHESPLAEMMPEKENNGARSLWKMPSWTAEELGLSVDLPQLVVPITNGLCARKEDASTIFV 256
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig817.16325.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Retinitis1.210e-20779.45pigmentosa 2 (X-linked recessive) n=1 Tax=Ectocarp... [more]
C-CAP/cofactor2.280e-5271.01C-like domain-containing protein n=1 Tax=Ectocarpu... [more]
Uncharacterized1.570e-5037.59protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Protein1.800e-4938.27XRP2 n=8 Tax=Phytophthora parasitica TaxID=4792 Re... [more]
XRP2-like1.070e-4841.59protein n=1 Tax=Pythium insidiosum TaxID=114742 Re... [more]
Protein1.210e-4742.79XRP2 n=1 Tax=Phytophthora sojae (strain P6497) Tax... [more]
Protein2.090e-4739.27XRP2 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T... [more]
Protein1.360e-4634.84XRP2 n=3 Tax=Clupeocephala TaxID=186625 RepID=A0A3... [more]
Cyclin-A1-21.400e-4638.27n=4 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9W0_P... [more]
Protein1.640e-4640.96XRP2 n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig817contigE_fasciculatus_S2_contig817:11606..17293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score592.8
Seed ortholog evalue1.3e-166
Seed eggNOG ortholog2880.D7FRD4
Preferred nameRP2
Model size1278
KEGG koko:K18272
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001655,GO:0001822,GO:0001894,GO:0001895,GO:0001947,GO:0002009,GO:0003007,GO:0003008,GO:0003143,GO:0003407,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005814,GO:0005815,GO:0005856,GO:0005886,GO:0005929,GO:0006457,GO:0006810,GO:0006892,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007600,GO:0007601,GO:0008047,GO:0008150,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0010842,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016604,GO:0022008,GO:0030154,GO:0030182,GO:0030234,GO:0030695,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0035050,GO:0035239,GO:0035295,GO:0035845,GO:0036064,GO:0042461,GO:0042592,GO:0042995,GO:0043010,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044451,GO:0044459,GO:0044463,GO:0044464,GO:0045494,GO:0046530,GO:0048193,GO:0048468,GO:0048513,GO:0048562,GO:0048568,GO:0048592,GO:0048593,GO:0048598,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0048869,GO:0048871,GO:0050790,GO:0050877,GO:0050953,GO:0051082,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0060041,GO:0060042,GO:0060249,GO:0060429,GO:0060562,GO:0060589,GO:0061371,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071840,GO:0071944,GO:0072001,GO:0072359,GO:0090596,GO:0097708,GO:0098590,GO:0098772,GO:0120025,GO:0120038,GO:1990075
Exons9
EggNOG free text desc.post-chaperonin tubulin folding pathway
EggNOG OGsKOG2512@1,KOG2512@2759
Ec32 ortholog descriptionretinitis pigmentosa 2 (X-linked recessive)
Ec32 orthologEc-21_002520.1
Cds size1278
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig817.16325.1prot_E_fasciculatus_S2_contig817.16325.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig817 11606..17293 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842478.7345173-CDS-E_fasciculatus_S2_contig817:11605..117911696842478.7345173-CDS-E_fasciculatus_S2_contig817:11605..11791Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig817 11606..11791 -
1696842478.749534-CDS-E_fasciculatus_S2_contig817:12240..124561696842478.749534-CDS-E_fasciculatus_S2_contig817:12240..12456Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig817 12241..12456 -
1696842478.7588754-CDS-E_fasciculatus_S2_contig817:13010..131801696842478.7588754-CDS-E_fasciculatus_S2_contig817:13010..13180Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig817 13011..13180 -
1696842478.7690406-CDS-E_fasciculatus_S2_contig817:13737..138261696842478.7690406-CDS-E_fasciculatus_S2_contig817:13737..13826Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig817 13738..13826 -
1696842478.779871-CDS-E_fasciculatus_S2_contig817:14472..145951696842478.779871-CDS-E_fasciculatus_S2_contig817:14472..14595Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig817 14473..14595 -
1696842478.7909458-CDS-E_fasciculatus_S2_contig817:15620..157631696842478.7909458-CDS-E_fasciculatus_S2_contig817:15620..15763Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig817 15621..15763 -
1696842478.801445-CDS-E_fasciculatus_S2_contig817:16124..163071696842478.801445-CDS-E_fasciculatus_S2_contig817:16124..16307Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig817 16125..16307 -
1696842478.8195636-CDS-E_fasciculatus_S2_contig817:16593..166821696842478.8195636-CDS-E_fasciculatus_S2_contig817:16593..16682Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig817 16594..16682 -
1696842478.8327045-CDS-E_fasciculatus_S2_contig817:17214..172931696842478.8327045-CDS-E_fasciculatus_S2_contig817:17214..17293Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig817 17215..17293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig817.16325.1

>prot_E_fasciculatus_S2_contig817.16325.1 ID=prot_E_fasciculatus_S2_contig817.16325.1|Name=mRNA_E_fasciculatus_S2_contig817.16325.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=426bp
MGNLFGKDCPEPKKPKKHGAGVGWNPAAGGGSITRDAVVKGNLNPSDFIL
SRKQKEVIVREPGSIGGQQFIVEECSECEVYLLDHTAALTIDLCTDCRVF
AGPCESRRDTTKISFCMDCTVVVACQQFRARDCTDCTFFLFSATQPVIES
SAGLRFACYTLDYFSLAGQFAAAKLSVWNNKWSQIYNFTGGGEGDWSCLP
EGSHHRDFTTRGLPRASRQRVGYTENTHGAVVPITAGIRDFTEAEETCFI
VVMPGHIDAVLGKLLAVGGGGDSPISATTSRLLRTKLFRPQMAQSKPFFS
GAPSSMAEMASSFPVLGMQWAGPGSAEAAVSLLAAAGVSIPPSPATPPPP
PPNESSDTKGKTPKGKTSHSTDIGARNGTSEYYMVAGGGDGGGNDDGRSG
RESPAAKAKVFFEQWDEDKGTPLGS*
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mRNA from alignment at E_fasciculatus_S2_contig817:11606..17293-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig817.16325.1 ID=mRNA_E_fasciculatus_S2_contig817.16325.1|Name=mRNA_E_fasciculatus_S2_contig817.16325.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5688bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig817:11606..17293- (Ectocarpus fasciculatus EfasUO2)
ATGGGAAACCTCTTCGGCAAGGACTGTCCAGAACCTAAAAAACCCAAGAA
GCATGGTGCAGGCGTCGGTTGGAATCCTGGTGTGTACGTGTGCCAGACTA
TACACTACTGTGCTTGTCGGCTAGACTATGCATACAGCCTCGGATCTTTC
CGCGCATGAGATGGCTGACCCCAGGTCTCGATGTCGGCTTCCGACAGAAA
GGATACCACACAGCATCTGCTGGCAGCTGCATGGATTTGTCTTTTACTCC
CACCAACAATCTTCTGCTGGGAGTCGCGACATGTTTGTCTGTCGCAACGT
TTTTTCTCTACTGCTGTAGGCTGGACTGTAGGAGGGTTATCTTCAGGTGC
GTGTCTTTCATCTCTTGTGGCGTGCGTGCGTGACACATGTCTGTGTATGT
TCGTGAGCGTCCCTGTGCGAAAGATCAATAATACCATATTGCGTGTTTGT
ACGATTCACCCCCAATCCGCGAGACCTTCGTGTACGTATATATAGACTGC
ATGCAGAGGCGCTGACTCTACTGTAGACTTCAATTACTACTGAACCTTGC
AGTATGTGACAGCGACGTGATTGGCCCTCGCACGATACCGGCGTGAAAAC
CTACTACTAAGCGGCAGGCGGCGGAAGCATTACCAGGGATGCTGTCGTCA
AGGGAAATCTCAATCCTAGCGATTTCATCTTATCGCGCAAGCAGAAAGAG
GTGAGAGCGTTGTGAGCTACATGTATAGACAGTGGTTGTTGCGGGTGCCA
TCGAAACAGTGGAAACTGGCTTTGCTGTTGGCAGGATAACCACATTCATC
TTGCAGAAAAAATGGAAGGCTAAAATAAACGAAGTTTGCGTAACATTGGA
ACTGACGGAGATGTGGCACCTGCAAGCTGTTCACTACTTGCAACGCTACA
AAACGCATCACCAATACCACCAACCTGAATGTCGTCAATGCTTGCTTACT
CTGGTTTTTTCTTGGTTGCTCTATATGTGAAACAAGGTAATTGTGCGAGA
ACCTGGTAGCATCGGTGGACAGCAATTCATAGTGGAGGAATGCTCGGAGT
GCGAGGTGTACCTTCTGGATCACACCGCAGCACTCACCATCGATCTATGC
ACAGACTGCAGGGTTTTCGCGGGGCCTTGTGAGAGCAGGCGAGATACAAC
CAAAATTTCCTTTTGTATGGTTCATCGTAGCCGGAAAACGATCATTTCTG
TAGGAGAACAAACATGCCTGGTTCGAGCACGCTACCGCTAATAGCACAGC
GTTTTCATCTTTGCTCAGAATTTTCTTCTACTGTGGACACGAGTCGCGAT
CCCGAAGTTAAGGTCCCAGATCGCCAACCCTCTTACGTGTCCCCTACTCT
CCACTCGAGATAGCAAGGTCATGCACTCCTCTACCGCATAGGTGTGTCTG
TTCAAATTTCCAAATCATGTGTCCTTGCCCACACTCGTCTTCACACGTCG
GATGGCACGCATGCATATGCCGTGGTTTTTGAAACAAATGTTCTGAACCG
AAAATCAGTGTGTTTATTCGGGACTGCAAGGACTGCACCGTGGTGGTGGC
CTGCCAGCAGTTCCGTGCCCGAGACTGCACGGACTGCACCTTCTTCTTGT
TCAGTGCCACCCAGCCCGTGATTGAGTCCTCCGCGGGGCTCAGGTTCGCC
TGCTATACGCTAGATTACTTCAGGTGCGATTCGTCAGTGATTTGAGTACT
GAGTTGGCATGGATTCTCCGCCTTCCTGCGGGTCGCGTGGTACGTTCTAC
ATGAAAATCGTTCCTTCTTCCGGCGAATAGTTTCTTACATTCTAGCAAAA
TCTACGATCTTATAGGGTCGCCTGGAATGTCATGCGCCGTTTTCCACTGT
CGGAGCCTACCTTGTTTTCGGGAGAAGTAAGCAACACTGTCTAGGGGGTC
GGGTCCGCTTTCGTGAGGTGTGGGGTTCTTCCAGTGTTCTTCCATCCCAC
CTACTCATTTTTTGGATCAGGCAGGTGTAGAAGGAAGGGTGCGGTTCATC
AGAATGCAGATGCAGATATCGCCACTCGTTATTGTGAAGGGTAGCTGCTT
GCCTGAGATGAGCAATTTCCCCGTTGGAAGAAACTGAGTTTTTTCGACGA
GGCTGCCAAGTGCGCTAAGAGACGTGGCGTTCCCACTGCGACAACTCGAT
GGTCGACAACGCCCTGAGCGCTGAACGTGGTGATATCACGCGTCCTTCGC
GCACCTATAGTGTAGTTGACGCCGCGGTTGTTGCTTTGAGCGTCTGATGC
GGGGTTTTGGAGTGCGCTCCGTTTGTTCCCGAACAGGCTCAGTCACGAGC
CAAGAATTGAAGGTTTCACTGTCTTCCTGTCTTTGCTTCTCAACCCATTC
AGACTCCAAGTCTCCACCCACCCCACTTAACGACCCACCACACACCACAA
ACCTCAAACCTCAGCGAAACCCACACAACAGAACAGAGGGTAGCAAGACT
CATGTAACAGGGACGGGGCCTTCAGTCTCCAACTCACCCATACCCAAAAG
GCCAGTGGCCCCGCAGAAATTTCTAGATCGAGTACACCAAACATGTCGAT
TCAACAAACCCGAACCTGGTGCGCGAGAACAAGCCTCAGACCATGCTTGT
GCCACAACCGGGTATATGATTGCATGCCACTGCGCTTCACCTCCCTCGTG
CGTAATCGCCCGTTCCTGCTCGTGCCCTGCCGCTTGCGACCCCTCAAGCC
TGGCTGGCCAGTTCGCGGCAGCCAAGCTAAGCGTATGGAACAACAAGTGG
AGCCAGATTTATAACTTTACCGGCGGGGGCGAGGGGGATTGGTCGTGCCT
CCCCGAAGGATCCCACCACAGGTAATCAAACAAACTACACCGTATAAAAG
GGATGGTGGGTTTCTCGTCCGTGAAGCGCCGAGCGTTTGGGGATGTGGGG
GTAGCGACGTCCACTTGGACCGTCGCCGTCACACCGGTCGTATCCCAGGA
CTTTGAGAGGGCCACCCTGATGCGTACTTTTAGTACAATATGTGCTGGGG
ATGAGATAGTAAGACGGAATTTCGATCATATAGCGAAAATTCAAATACCC
ATGCACTGTTACTGTACCCGAATAGCTACAGTTGCCGCATGTTCATGGGA
CGGCGGAGAGGTTGAAACGTGCCACAAGCGACAGGAGTGATGCTCACATT
CAGAACCATGTACGCATTGCCTCACCTTTTCAAGGAGACGTGGGACCTCC
TACTTTCATAGTACCGTGAGGTCGTGCAACACTTGGTGGATAACCTCTGC
TCAACGAGATGCTATCACCCACACGGTGTAGACGGTTGGGGATCGACATC
AAGGACTATAATCTGAAGTATACTTCTACGAACCTAGGCAATTCATGCTT
AGGGGAGCCGGTAGATAATTTTTTGATCGGCCCGTTCGTCCAATCGGCGG
CCTCTCGATTGGTGACACTCCAACTCGCTGCTCTACAAACTCATCTGTTT
CTGTCTCTGTTTGACAGGGATTTCACCACACGAGGCCTGCCCAGGGCCTC
AAGGCAAAGAGTGGGATACACAGAAAATACTCACGGAGCAGTCGTACCAA
TTACTGGTGAGAAGCGTTATACAGACATTCCGACTCCGTGATGGTGCGTG
GAGGGGGCGGGCGGTTTACATTTCAATTTCCAGCACTCGGCTAACCACTG
GGGCGTCCATACATAGCTCATGACCCTTCGGAGACAAGGAAAGTGCCTGT
ATTGATCTACTGGGGCATACCGCGATTGGGGTTGGAGACTTTGCCACTAG
AAATACGTGGCGTTGAACAATCACCATGATATTGTACGCCACAACATCCT
CACCATCACTGACGGAACTTTCCAACACTGCAATGATGAAAACCGCCTAG
TGGAACATGTGGGGGTAGGTATCGAGTCTCCCGAAGGTTAGGAGAGGTTC
GGGACCGGTAAGATGTTGCAGAGGTACGGTTTTTCCGGAAGCAAGGAACA
AACCAAGCCATGTCTTGTTTCCGGGTTCCACAATATAGTCCAGCATGTAT
CCGGTGCCAAGTGACAACTCGAAACGAGTCAGCAATCCACTGTCAAATCC
ATCGTTGCCATGTCCTCGCAAACTTCCCACCATCGCACTTGGAAACCACC
GGGCGGTCAACAGCGGGGATAAGGGACTTTACGGAGGCCGAAGAGACCTG
CTTCATCGTAGTGATGCCGGGGCACATCGACGCCGTTCTGGGGAAGCTGC
TGGCCGTAGGAGGCGGGGGAGACTCCCCGATATCGGCGACGACGTCAAGG
CTGCTGAGGACTAAGCTCTTCCGTCCGCAAATGGTGGGTGGTAAACCAGA
GGCGGTCATAGCAGTGCGGTTACTTGATGTACATCTGGTATCGTTGATGA
GTGCATTGCTCCGGTTGTTTGTTTTGCGTGTAGCACATTTCTCGGAGCTT
GTTGAACAATCAATCGATTTGACTACAAACTATTGGGGAGTGTTCGAATG
GCCGATCACCTGCTGTAGTAGGCAGGGGAGGATCGAATGACGCCAAGAAA
CAAATGTTTGGTCGAAGCGAACTCGAAAGCCACCGCTGTTTCAAACACAT
GCCGATTTCCTGAAGAACTCTCAAGGATCAATGCCAGTCCGACAGGCAAG
CCGATATTTTTCGTAACAGAAGAACACAGCATGGCCAAATTGTCTCTCTG
AGGTATGAAAACCTGAAAGCCTATTAAAATCATTCGTTTTCCTTCACCGG
TCCTCTCATGTGCTGGGACTAGGCCACCTTCGCAGTCCTGCCCCAACATC
GCCATGGCATGCGCATCTGCAGTAGGCCTTACACACCAACACCAACACTG
TTTCACTCTGTTTTATGCACACTGAATTGAACGACAGGCCCAAAGCAAGC
CTTTCTTCTCCGGAGCCCCATCCTCCATGGCCGAAATGGCGTCGTCCTTC
CCCGTCTTGGGAATGCAGTGGGCTGGGCCCGGTAGTGCCGAGGCGGCGGT
GTCCTTGCTGGCAGCCGCCGGAGTTTCGATCCCACCGTCGCCGGCGACGC
CTCCCCCGCCGCCGCCGAACGAGAGTAGTGACACGAAGGGAAAGACGCCC
AAGGTATCGACGTTGCAAGAAGTTTAGGACGGACGACGTTGCAAGAAGCG
AGAAATGCCATCCAAATTTTGGTGTTACAGGGAAGAGCGAACGACAGTGT
TCAGCCTAACCTATTTCATGTTATTGAGGTGTATACCGAAGAGACCGGAA
GGTCCAGAGGTTAACGAATGCTGGCCGTATCTACTAGGGGTTGAGTTCTT
TGCCCTCTGTGTCGCGTAGATTTCCTCAGTAGTTGCTTTAGATGTGCAGG
TGGTTTCCGCAAATGAAATGGTCGATATATGCCTATCCCCCTGAATCCTA
GGTAAACTTTATCCACGGAATGGATTGTAACCAAGCTTGGTGGACAACGA
CGTCAATCTAGAAGAGGTGTGGCATATCCCTTGACTTGGATGTATCCTAC
TCTTACCGAGAAGGCCCGCACGGCTCTGCTTGCCCATACTACTGTTTTGC
AGGGAAAAACCAGCCACTCCACCGACATAGGAGCCAGGAATGGCACTTCG
GAGTATTACATGGTCGCTGGTGGAGGCGACGGAGGCGGTAACGATGACGG
CAGGAGTGGTCGTGAGTCACCAGCTGCAAAGGCTAAGGTGTTCTTCGAGC
AGTGGGACGAAGACAAAGGAACGCCTCTGGGTTCGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig817:11606..17293-

>mRNA_E_fasciculatus_S2_contig817.16325.1 ID=mRNA_E_fasciculatus_S2_contig817.16325.1|Name=mRNA_E_fasciculatus_S2_contig817.16325.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1278bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig817:11606..17293- (Ectocarpus fasciculatus EfasUO2)
ATGGGAAACCTCTTCGGCAAGGACTGTCCAGAACCTAAAAAACCCAAGAA
GCATGGTGCAGGCGTCGGTTGGAATCCTGCGGCAGGCGGCGGAAGCATTA
CCAGGGATGCTGTCGTCAAGGGAAATCTCAATCCTAGCGATTTCATCTTA
TCGCGCAAGCAGAAAGAGGTAATTGTGCGAGAACCTGGTAGCATCGGTGG
ACAGCAATTCATAGTGGAGGAATGCTCGGAGTGCGAGGTGTACCTTCTGG
ATCACACCGCAGCACTCACCATCGATCTATGCACAGACTGCAGGGTTTTC
GCGGGGCCTTGTGAGAGCAGGCGAGATACAACCAAAATTTCCTTTTGTAT
GGACTGCACCGTGGTGGTGGCCTGCCAGCAGTTCCGTGCCCGAGACTGCA
CGGACTGCACCTTCTTCTTGTTCAGTGCCACCCAGCCCGTGATTGAGTCC
TCCGCGGGGCTCAGGTTCGCCTGCTATACGCTAGATTACTTCAGCCTGGC
TGGCCAGTTCGCGGCAGCCAAGCTAAGCGTATGGAACAACAAGTGGAGCC
AGATTTATAACTTTACCGGCGGGGGCGAGGGGGATTGGTCGTGCCTCCCC
GAAGGATCCCACCACAGGGATTTCACCACACGAGGCCTGCCCAGGGCCTC
AAGGCAAAGAGTGGGATACACAGAAAATACTCACGGAGCAGTCGTACCAA
TTACTGCGGGGATAAGGGACTTTACGGAGGCCGAAGAGACCTGCTTCATC
GTAGTGATGCCGGGGCACATCGACGCCGTTCTGGGGAAGCTGCTGGCCGT
AGGAGGCGGGGGAGACTCCCCGATATCGGCGACGACGTCAAGGCTGCTGA
GGACTAAGCTCTTCCGTCCGCAAATGGCCCAAAGCAAGCCTTTCTTCTCC
GGAGCCCCATCCTCCATGGCCGAAATGGCGTCGTCCTTCCCCGTCTTGGG
AATGCAGTGGGCTGGGCCCGGTAGTGCCGAGGCGGCGGTGTCCTTGCTGG
CAGCCGCCGGAGTTTCGATCCCACCGTCGCCGGCGACGCCTCCCCCGCCG
CCGCCGAACGAGAGTAGTGACACGAAGGGAAAGACGCCCAAGGGAAAAAC
CAGCCACTCCACCGACATAGGAGCCAGGAATGGCACTTCGGAGTATTACA
TGGTCGCTGGTGGAGGCGACGGAGGCGGTAACGATGACGGCAGGAGTGGT
CGTGAGTCACCAGCTGCAAAGGCTAAGGTGTTCTTCGAGCAGTGGGACGA
AGACAAAGGAACGCCTCTGGGTTCGTGA
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