mRNA_E_fasciculatus_S2_contig8168.16322.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8168.16322.1
Unique NamemRNA_E_fasciculatus_S2_contig8168.16322.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8168.16322.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX5_ECTSI)

HSP 1 Score: 525 bits (1352), Expect = 6.760e-180
Identity = 267/291 (91.75%), Postives = 273/291 (93.81%), Query Frame = 1 
Query:    4 LELVTELWPVLLDRSTQQGEAQFQRYGHAAMSLLRQVLMSGLYSTKYIGGFDISKQRRVESDTPGPIQLVPADRQRRALTLVLRVVAGDEPAGGAAFLPAEEDFSNLAAWSGSCAGLGQYCYGVVPVDVLSEVNALRKTVLLQAFSVDHIMRLRLHSWAGGGAGGVDTLSVAEMFESATNAVWGDGGFGSSRAKLWQNWDLMLFWLEVLQASCSLFPRGAAYGSAGVDSAVPGDVSATAVGLVYSLMDTGRNLTSADAAYGLHRAAALKHGAWEERGNTDGFILWQLGGLK 876
            LELVTELWPVLLDRSTQQGEAQFQRYGHAAMSLLRQVL SGLYSTKYIGGF ISKQRRVESDTPGPIQLVPADRQRRALTLVLRVV GDEPAGGAAFLP EEDFSNLA WSGSCAGLGQYCYGVVPVDVLSEVNALRK+VLLQAFSVDHIMRLRLHSWA G AGGVDTLSV+EMFESATNAVWGDGGFGS+RAKLWQNWDLMLFWLEVLQA          YGSAGV+S VPGDV+ATAVGLVYSLMDTG+NLTSADAAYGLHRAAALKHGAWEERGNTDGFILWQLGGLK
Sbjct:  525 LELVTELWPVLLDRSTQQGEAQFQRYGHAAMSLLRQVLASGLYSTKYIGGFHISKQRRVESDTPGPIQLVPADRQRRALTLVLRVVTGDEPAGGAAFLPGEEDFSNLAGWSGSCAGLGQYCYGVVPVDVLSEVNALRKSVLLQAFSVDHIMRLRLHSWASG-AGGVDTLSVSEMFESATNAVWGDGGFGSARAKLWQNWDLMLFWLEVLQA----------YGSAGVESVVPGDVTATAVGLVYSLMDTGKNLTSADAAYGLHRAAALKHGAWEERGNTDGFILWQLGGLK 804
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BLAST of mRNA_E_fasciculatus_S2_contig8168.16322.1 vs.
Match: DUF4953 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFA7_9STRA)

HSP 1 Score: 169 bits (427), Expect = 6.820e-46
Identity = 101/285 (35.44%), Postives = 152/285 (53.33%), Query Frame = 1 
Query:    4 LELVTELWPVLLDRSTQQGEAQFQRYGHAAMSLLRQVLMSGLYSTKYIGGFDISKQRRVESDTPGPIQLVPADRQRRALTLVLRVVAGDEPAGGAA------FLPAEEDFSNLAAWSGSCAGLGQYCYGVVPVDVLSEVNALRKTVLLQAFSVDHIMRLRLHSWAGGGAGGVDTLSVAEMFESATNAVWGDGGFGSSRAKLWQNWDLMLFWLEVLQASCSLFPRGAAYGSAGVDSAVPGDVSATAVGLVYSLMDTGRNLTSADAAYGL-----HRAAALKHGAWE 825
            L++V E+ P LLDR+ Q GE  F RY  +   LL+ + +SGLY+ KYIGG  +SKQRR+ ++T  P   V A +QR AL L+++++ G E  G AA      FLP       +    G C G+ +YC    P DVL+++  +R+ +LL   S+D +  +RL+SW   G  G    ++ E+F + T+A+WG G   S+RA   +NW +MLFW ++L A     P               GD++A A G  Y +  +   L  +  A+GL      R +  + GAWE
Sbjct:  142 LDVVAEIRPKLLDRAVQLGEP-FTRYSDSEKMLLQLIKVSGLYAAKYIGGMQLSKQRRIATNTQAPATPVSAAQQREALALLVKILTGVEAVGSAANSTSVDFLPEPTALPLMVQTGGVCEGIERYCLATEPYDVLTDLQTVREMILLNVLSLDRLDMVRLNSW---GKQGSSAFTIRELFTTLTDAIWGGGLIASTRAASPENWAIMLFWGDLLMAIAVAIPSSG------------GDIAAAAAGEAYRIAASAPALDPSAPAWGLSKEFQRRLSTWERGAWE 410
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8168.16322.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.760e-18091.75protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
DUF49536.820e-4635.44domain-containing protein n=1 Tax=Tribonema minus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8168contigE_fasciculatus_S2_contig8168:3301..6149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score527.7
Seed ortholog evalue3.4e-147
Seed eggNOG ortholog2880.D8LLX5
Model size879
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Met-zincin
EggNOG OGs2CXMF@1,2RYE2@2759
Cds size879
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842478.4738257-CDS-E_fasciculatus_S2_contig8168:3300..35161696842478.4738257-CDS-E_fasciculatus_S2_contig8168:3300..3516Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8168 3301..3516 -
1696842478.493785-CDS-E_fasciculatus_S2_contig8168:3846..41101696842478.493785-CDS-E_fasciculatus_S2_contig8168:3846..4110Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8168 3847..4110 -
1696842478.5064259-CDS-E_fasciculatus_S2_contig8168:4947..52351696842478.5064259-CDS-E_fasciculatus_S2_contig8168:4947..5235Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8168 4948..5235 -
1696842478.517816-CDS-E_fasciculatus_S2_contig8168:6038..61491696842478.517816-CDS-E_fasciculatus_S2_contig8168:6038..6149Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8168 6039..6149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8168.16322.1prot_E_fasciculatus_S2_contig8168.16322.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8168 3301..6149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8168.16322.1

>prot_E_fasciculatus_S2_contig8168.16322.1 ID=prot_E_fasciculatus_S2_contig8168.16322.1|Name=mRNA_E_fasciculatus_S2_contig8168.16322.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=293bp
QLELVTELWPVLLDRSTQQGEAQFQRYGHAAMSLLRQVLMSGLYSTKYIG
GFDISKQRRVESDTPGPIQLVPADRQRRALTLVLRVVAGDEPAGGAAFLP
AEEDFSNLAAWSGSCAGLGQYCYGVVPVDVLSEVNALRKTVLLQAFSVDH
IMRLRLHSWAGGGAGGVDTLSVAEMFESATNAVWGDGGFGSSRAKLWQNW
DLMLFWLEVLQASCSLFPRGAAYGSAGVDSAVPGDVSATAVGLVYSLMDT
GRNLTSADAAYGLHRAAALKHGAWEERGNTDGFILWQLGGLK*
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mRNA from alignment at E_fasciculatus_S2_contig8168:3301..6149-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8168.16322.1 ID=mRNA_E_fasciculatus_S2_contig8168.16322.1|Name=mRNA_E_fasciculatus_S2_contig8168.16322.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2849bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8168:3301..6149- (Ectocarpus fasciculatus EfasUO2)
CAGCTGGAGCTCGTTACGGAGCTGTGGCCCGTCCTGTTGGACCGCAGCAC
GCAGCAGGGGGAGGCTCAGTTCCAGCGGTACGGGCACGCCGCCATGTCCC
TGCTCCGACAGGTATGGTGATTTTGCGTCGCCCTCACCGGAACAACCCGC
CTTTTTTTATTCAGACTCGTCGTAGGAGTATGAAACCTTGCTATAGTCGC
TGCACTCAAGCCTCACGGATGCTGGAATTCGCGGGAGGGGGCTGGGGCAG
GGTGGTGATTTAATGGCGAGGCTCACGCTTGAAAGGCGCGCTCTTGTTTT
TATGGTTATAATGCTGTCATTGTCTGTATGTGCTTCTCTGACGACGATGC
TGCGCACAGTGTTGTGCTCCCCAAGTGCCCTTCACGGGCACGTGATGTTT
GCTGCGTGTCTGTCTCTAGGGAGCGAAACCAAGCAGAAACCAGCACCCCA
CCGTAGACCATACCCTTGCAAAGCTCGGCTACATTTCCCCCCACGAAGGG
TGCAATGAGTCGTTTTTGGAAAGCTATCGTATCTATCGTATCGGTGACAG
GGTTCCAAAGCCGCCGTTTCGGCACCGTGAACCTAGTTGTGCCGCAGGGT
ATTTGGGTTTGGAAGTTCGGTCCGGGAGGTGTAGTATCCTACGCAACCTT
CGGTACGGTACTGTAATCGTTGAAACGGCGGAGAGGAGAGGACTGACTGG
ACATCGAAGGGAACGAACGCCTCCATACAACGCCTGCTGCAAGCCAAGGA
AACCCACACGCACTGTATGCCGTCGCCGACAACGATGCGACGGCCAATTG
TAACCTCAAAGCGAGAGCGCGCACGCATTCGTATTGCCATTGCCGATCAT
GATGCTGCGGCCGATTGTGACCTTCAAGCGCGCCCCCGCACCACCCGTCG
TTGTCGACCCACAGGTGCTCATGAGCGGTCTGTACTCCACCAAGTACATC
GGGGGGTTCGACATCTCCAAGCAGAGGCGGGTGGAGAGCGACACCCCGGG
GCCGATACAGCTCGTGCCCGCGGACCGGCAGAGGAGGGCGCTGACCCTGG
TGCTGAGGGTGGTTGCGGGGGACGAGCCTGCGGGGGGCGCCGCCTTCCTG
CCCGCGGAGGAGGACTTCTCCAACCTGGCGGCCTGGTCCGGGTCCTGCGC
GGGGCTGGGGCAGTACTGCTACGGCGTCGTGCCGGTGGACGTGTTGAGCG
AGGTGTGTACTGAAGGCGGCAGCCAGCCAGCCCACCGCTTGGGAACTTTA
CCAGTAGCAGTTAAGAGCTTGAGCCTCAAAAAGGTCCACAATCTTGACAA
CTTGGCGGTAGGAGCAGGCGTTCAGTCGAGAAGGTGTACATGTGTTCCAT
GCGTTAGCGGTTAGACCATTGACCACATATACTGAATAATTGAATGATTG
TGGGGCGGGGGGGGGGGGGGGGGGGGGGTTCTGGAATGGTCTGTTGATCT
GTCGTCTACATTGCACCTAGTATGGAACGAGTTATTATGGAGGTATGTAC
GTTTTTTCCGGGTCCACCAAGTTTTTCGAGGTGAACGATGGTTGCTGTTT
TTGCGGGGGAAACATCAGCACGACTGACTAGAGGAGGCGGTCTGGTGGTA
ACTTATCGCTACTTGCGTTTTGAGCATGGAAGGGTTGGTTGCGTTGGTAG
TGCTGGTCCAGAGAAACGCTCATCTCATCATCTCTTCGTCCGTTGCTTTA
GTGTGCCTTGTGGTGTGGTTCTTGCGCATACGCAGTAGCGCAAACAAACT
AAGTCAGCACGATTCGTTTCAAGCGCCGAGCCTCGAAGAGCGGTGTCCGG
CGTGACACGGGGCGTTGGATGCGGTCCTAGATAGACACGTACAGTATCGA
TATCGTTCGTTCACCACAATCCGTCCTGTTTGCTCCAGACATATTGTCTT
GAAGACTCGCCCCCGGCGCCGCACACACGCACCCGTACCCCCCCCCCCCC
CTACCTACCACCGCCCACATTCATCCTCCGCGCCCCCCCCCGCTAATCTG
CCACCGCCCACAAATCACCCTAAAACCTCTCCCGCAAAGGTGAACGCCTT
GAGAAAAACGGTGCTCCTCCAGGCCTTCTCCGTCGACCACATCATGCGGC
TGCGCTTGCACTCCTGGGCTGGCGGCGGGGCAGGCGGCGTGGACACGCTC
TCCGTGGCGGAGATGTTCGAGAGCGCGACTAACGCCGTGTGGGGCGACGG
CGGCTTCGGCAGCTCCCGCGCGAAGCTGTGGCAGAACTGGGACCTGATGC
TCTTCTGGCTGGAGGTGCTGCAGGCAAGTTGTTCTTTGTTCCCCCGGGGT
GCTGTGCAAGGTGCATCACCGGTACAGGATACAGCGGCATACCCGTACCG
TATAGCCGTACCGTACCACCGAACATGGAACGAACCCCCATCGTCTCCGA
AGAAGGCGTAGGAGTAGGGGTAGTCCGTGGGCCGGCCTGGTGTCGGCGGC
TAAGTTTCTTGTATCCCTTGATTTTGGAACCGCGCCCTTGACCCACAAGC
ATATTTTTTCACACGTACATTTACGTTTGTTGATGTCGGCAAACATCCCC
CGTTTTTTTTGCCTCCGCATATGTATGATGTCGACCGCACCAATAACGCC
CCCCCCCCCGGGCGTGCTTTCCCCCACCATCAGGCGTACGGATCGGCCGG
AGTAGACTCCGCCGTCCCAGGAGACGTATCGGCCACCGCTGTGGGCCTCG
TCTACTCTCTCATGGACACCGGCAGGAACTTGACCTCCGCCGACGCGGCC
TACGGCCTCCACCGCGCCGCCGCCCTCAAGCACGGGGCGTGGGAGGAGCG
GGGCAACACGGACGGGTTTATTCTGTGGCAGCTGGGAGGGTTGAAATAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8168:3301..6149-

>mRNA_E_fasciculatus_S2_contig8168.16322.1 ID=mRNA_E_fasciculatus_S2_contig8168.16322.1|Name=mRNA_E_fasciculatus_S2_contig8168.16322.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=879bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8168:3301..6149- (Ectocarpus fasciculatus EfasUO2)
CAGCTGGAGCTCGTTACGGAGCTGTGGCCCGTCCTGTTGGACCGCAGCAC
GCAGCAGGGGGAGGCTCAGTTCCAGCGGTACGGGCACGCCGCCATGTCCC
TGCTCCGACAGGTGCTCATGAGCGGTCTGTACTCCACCAAGTACATCGGG
GGGTTCGACATCTCCAAGCAGAGGCGGGTGGAGAGCGACACCCCGGGGCC
GATACAGCTCGTGCCCGCGGACCGGCAGAGGAGGGCGCTGACCCTGGTGC
TGAGGGTGGTTGCGGGGGACGAGCCTGCGGGGGGCGCCGCCTTCCTGCCC
GCGGAGGAGGACTTCTCCAACCTGGCGGCCTGGTCCGGGTCCTGCGCGGG
GCTGGGGCAGTACTGCTACGGCGTCGTGCCGGTGGACGTGTTGAGCGAGG
TGAACGCCTTGAGAAAAACGGTGCTCCTCCAGGCCTTCTCCGTCGACCAC
ATCATGCGGCTGCGCTTGCACTCCTGGGCTGGCGGCGGGGCAGGCGGCGT
GGACACGCTCTCCGTGGCGGAGATGTTCGAGAGCGCGACTAACGCCGTGT
GGGGCGACGGCGGCTTCGGCAGCTCCCGCGCGAAGCTGTGGCAGAACTGG
GACCTGATGCTCTTCTGGCTGGAGGTGCTGCAGGCAAGTTGTTCTTTGTT
CCCCCGGGGTGCTGCGTACGGATCGGCCGGAGTAGACTCCGCCGTCCCAG
GAGACGTATCGGCCACCGCTGTGGGCCTCGTCTACTCTCTCATGGACACC
GGCAGGAACTTGACCTCCGCCGACGCGGCCTACGGCCTCCACCGCGCCGC
CGCCCTCAAGCACGGGGCGTGGGAGGAGCGGGGCAACACGGACGGGTTTA
TTCTGTGGCAGCTGGGAGGGTTGAAATAG
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