mRNA_E_fasciculatus_S2_contig8168.16321.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig8168.16321.1
Unique Name	mRNA_E_fasciculatus_S2_contig8168.16321.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig8168.16321.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX4_ECTSI)

HSP 1 Score: 447 bits (1150), Expect = 1.270e-155
Identity = 259/325 (79.69%), Postives = 279/325 (85.85%), Query Frame = 1

Query:    1 MCVSGAKKDESTXXXXXXXXXXXXXXXXXXSTAAGAADEAPVIEADSGTSVPHLTASRPPS-AVAIVQSIKTMQQQLVDVSLNGVIPVASEAAMARYKGAVEKFEASQKAFTTVAMSLNAAQRDALKASDEVIEAAREAFGEDPKAPSDSAFGSAQMDPFSALPQEKRSSSSRSLSQELRQAHLRLARVEQQLALINVSSGSNADRYAPTSPEVAAASKRLRRLLQRHLRVTEKENSATRAATASDGDYAKLTVHGYHQNAQVLVDTYRCSGSACQVFSLLRKYKRFAAQKAKMDASVVTHLHNVATSRYGSLLAEREGFKGVLW 972
            M VSGA KD+ST                  STA G AD+A VIEA+SGTSVPH TASRPPS +VAIVQSIK MQQQLVDVSLNG IPVAS+A MARY+GAVEKFEASQKA TTVA+SLNAAQRDALKASD+VIEAAREAFGEDP+A SDSA GSAQM+P ++L QEKRSS   SL+QE+RQA+LRLARVEQQLA+INV SGSN DRY PTSP VAAASKRL RLLQRHLRVTEKENSATRAA ASDG YAKLTVHGYHQNAQVLVDTYRCSGSAC+VFSL+R+YKRFAAQKAK DASVVTHLHN+A SRYGSLLAERE FKGVLW
Sbjct:    1 MSVSGADKDKSTTVVEEDGYLLWLSDDDINSTA-GTADQASVIEAESGTSVPHSTASRPPSTSVAIVQSIKAMQQQLVDVSLNGAIPVASDAVMARYRGAVEKFEASQKALTTVAVSLNAAQRDALKASDDVIEAAREAFGEDPEASSDSASGSAQMNPSASLSQEKRSSPC-SLTQEVRQANLRLARVEQQLAVINVCSGSNTDRYPPTSPNVAAASKRLGRLLQRHLRVTEKENSATRAA-ASDGAYAKLTVHGYHQNAQVLVDTYRCSGSACRVFSLVREYKRFAAQKAKKDASVVTHLHNMAASRYGSLLAEREEFKGVLW 322

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig8168.16321.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig8168.16321.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
Uncharacterized	1.270e-155	79.69	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig8168	contig	E_fasciculatus_S2_contig8168:215..2703 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	1
Start	1
Model size	975
Hectar predicted targeting category	other localisation
Exons	4
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-14_002020.1
Cds size	975

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842478.402089-CDS-E_fasciculatus_S2_contig8168:214..314	1696842478.402089-CDS-E_fasciculatus_S2_contig8168:214..314	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8168 215..314 +
1696842478.414362-CDS-E_fasciculatus_S2_contig8168:846..1356	1696842478.414362-CDS-E_fasciculatus_S2_contig8168:846..1356	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8168 847..1356 +
1696842478.4257698-CDS-E_fasciculatus_S2_contig8168:1875..2188	1696842478.4257698-CDS-E_fasciculatus_S2_contig8168:1875..2188	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8168 1876..2188 +
1696842478.4427512-CDS-E_fasciculatus_S2_contig8168:2651..2703	1696842478.4427512-CDS-E_fasciculatus_S2_contig8168:2651..2703	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig8168 2652..2703 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig8168.16321.1	prot_E_fasciculatus_S2_contig8168.16321.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig8168 215..2703 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig8168:215..2703+
coding sequence from alignment at E_fasciculatus_S2_contig8168:215..2703+

protein sequence of mRNA_E_fasciculatus_S2_contig8168.16321.1

>prot_E_fasciculatus_S2_contig8168.16321.1 ID=prot_E_fasciculatus_S2_contig8168.16321.1|Name=mRNA_E_fasciculatus_S2_contig8168.16321.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=325bp
MCVSGAKKDESTTVVEEDGYLLWLSDDDTNSTAAGAADEAPVIEADSGTS
VPHLTASRPPSAVAIVQSIKTMQQQLVDVSLNGVIPVASEAAMARYKGAV
EKFEASQKAFTTVAMSLNAAQRDALKASDEVIEAAREAFGEDPKAPSDSA
FGSAQMDPFSALPQEKRSSSSRSLSQELRQAHLRLARVEQQLALINVSSG
SNADRYAPTSPEVAAASKRLRRLLQRHLRVTEKENSATRAATASDGDYAK
LTVHGYHQNAQVLVDTYRCSGSACQVFSLLRKYKRFAAQKAKMDASVVTH
LHNVATSRYGSLLAEREGFKGVLW*

mRNA from alignment at E_fasciculatus_S2_contig8168:215..2703+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig8168.16321.1 ID=mRNA_E_fasciculatus_S2_contig8168.16321.1|Name=mRNA_E_fasciculatus_S2_contig8168.16321.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2489bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8168:215..2703+ (Ectocarpus fasciculatus EfasUO2)
ATGTGCGTATCGGGAGCCAAGAAGGACGAGTCCACCACCGTTGTGGAAGA
AGATGGGTACCTTCTGTGGCTCTCGGACGACGATACAAACTCTACGGCAG
GTGAAATCCAGGCAGCCCGTGGGTACTGCTGTGTACCCACATCAACGAGA
CTTTCTGAATTTCTGCGTCATCGGACACATTCTTTGAGGAGACGAGTCTG
CTGCTGTATTTGCTTCTCAATTCGTGAACTTTCAGAGCTCAGACGCACAT
TTCGCAACGCTGTTTAGCTGAGTGTCTCGTTCGTTACGGGGGGGGCTCGT
TTGAAAGCGAGACAAAAACTCGTTCATGCTGCCCGCTGCTGGCGGTTGGT
TGTTGGCTGCTTTCAATATTTGTATGCTTGCAATACAGCTCCTCGGACCA
TCTTCGCGCTACCAGGTACTCTTGACTATTGTAGACTGTTCTGTACAGCA
GCAGAGTTTACCCAACCGCCGGGTGTATCGCGCGCCCGCTCTCTTCTCTT
ACCAAAACGTCACGGCTCCATTCGATGCTCGCAGGTATCTATCAACAGTA
TTACTTTTCTTCTCCATCGCATCTCAGAGGCTGTGTCCACAATGCCGTGT
CGTCTCCTGCTGCTGGTGGTGAATATTCTTAGCAGGCGCCGCCGACGAGG
CACCCGTGATCGAGGCCGACTCGGGTACCTCTGTGCCGCATTTGACTGCA
TCGAGGCCGCCCAGTGCTGTAGCCATTGTGCAGAGCATCAAGACAATGCA
ACAACAGTTGGTGGACGTCTCCCTGAACGGTGTCATTCCAGTAGCCTCCG
AGGCCGCGATGGCACGGTACAAGGGGGCTGTAGAAAAATTCGAGGCGTCG
CAGAAAGCTTTCACGACCGTTGCGATGAGCCTGAACGCCGCTCAGCGGGA
TGCCCTCAAAGCATCCGACGAGGTCATAGAAGCGGCCAGGGAAGCGTTCG
GTGAAGACCCTAAAGCTCCTTCAGACTCCGCTTTCGGCAGCGCACAGATG
GACCCGTTTTCCGCTCTGCCGCAGGAGAAACGCTCATCATCATCGCGTTC
ATTGTCACAAGAATTACGACAGGCCCATCTGAGACTGGCAAGGGTTGAGC
AACAACTTGCTCTCATCAACGTCTCTTCCGGCAGCAACGCTGGTGCGCAT
GTGGGGGAAGTAGCAACCGTGGCCTTAATTTGCTACAATAGTTCGTGGCT
GGGAGCGCCGCTCACTCGAAAAAGTCGCTCGTCGGGTGCGTAGTTTACAG
TACCGATTCTGGTAAAACTCAATTGGATACCCTTGCGAATCGGGTTCTCC
TTACCAGTAGTGCATTCGACTCGAGTGTGTGTGGCCATTTGATATGGTGT
TCGAAATAAGTCGCAAGGTGGTGGCGGGTGTGGGGCTTGCAACACTTCAA
GCTTGGAATGGGGGTGGCACTGACAACGGTGCAAGAGTTGAGCTCGGATT
TCTTTGCGGGCATCAATAAACTAACGAAGTAGGCATTGGACGGTAGAGAG
GCAAAAGTGAAGATACATCACGGTGCTTCGCACCTATATCCCCTTTTTTC
TGGGTCGAGATGCCGCCCGAAAAGGTTCTTCCTGATTGTCGTCCTTGCTC
AAGGGGTTTCTACATGATCGCAAAAAAAAATCTCGTGCTTTCTCAATTCT
GTGCGACGCAGATCGATATGCGCCAACATCACCGGAGGTTGCCGCTGCTA
GCAAGAGACTCAGGAGACTTCTGCAGAGGCACCTCCGCGTTACGGAGAAG
GAGAATTCCGCCACCCGCGCTGCTACTGCCAGCGATGGCGACTACGCGAA
GCTGACGGTCCACGGCTACCACCAGAACGCGCAGGTCCTCGTCGACACCT
ACCGCTGCTCCGGAAGCGCGTGTCAAGTCTTCAGCCTCTTGCGGAAGTAT
AAACGTTTCGCGGCGCAGAAGGCAAAGATGGACGCGTCCGTGGTTACCCA
TCTCCACAACGTGGCTACCTCCAGGTGCATGCATAGATATCTGACCAGGT
TTCAATGAGTTGGATTCCTCGGGGGTGGCCGTACGTAAGAGTACCCAGCC
CGAGTGCGGTGCAATGTGAAATGCTTGGTGGGCGAAGGGGGCCGTTCGAT
TCACTCGTAACAGCAGCGCAAGAATATACCTTTGTGTCGATGGAGCTCTC
CGATAAATCTACAACAACATCTACGTTTCTTTGTGGATATGTGTTGTGGT
CAAACCAGTGCGTGAAGCAGCTGATCCAACGGCGGAGCTCGCTCGTGGAA
AAAAGCGAAAAATAGATGATGTTGAGGTACATGCTCTAAGCTAAACAGGT
GGCGTGTCGTACAACTGAGAGATCTATTGGTGCTGCAACTGGGCAAACCG
TTGCTTCCCTCGCTGCCCCCATTCGTTAATGTATACTTCTTTGCTGCGTA
CGTTTCTGTGGACTCGTGTTGTTGCGTCTCTGCGCAGGTACGGTAGCCTA
CTCGCCGAGCGGGAAGGGTTCAAAGGCGTTCTGTGGTAG

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8168:215..2703+

>mRNA_E_fasciculatus_S2_contig8168.16321.1 ID=mRNA_E_fasciculatus_S2_contig8168.16321.1|Name=mRNA_E_fasciculatus_S2_contig8168.16321.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=975bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8168:215..2703+ (Ectocarpus fasciculatus EfasUO2)
ATGTGCGTATCGGGAGCCAAGAAGGACGAGTCCACCACCGTTGTGGAAGA
AGATGGGTACCTTCTGTGGCTCTCGGACGACGATACAAACTCTACGGCAG
CAGGCGCCGCCGACGAGGCACCCGTGATCGAGGCCGACTCGGGTACCTCT
GTGCCGCATTTGACTGCATCGAGGCCGCCCAGTGCTGTAGCCATTGTGCA
GAGCATCAAGACAATGCAACAACAGTTGGTGGACGTCTCCCTGAACGGTG
TCATTCCAGTAGCCTCCGAGGCCGCGATGGCACGGTACAAGGGGGCTGTA
GAAAAATTCGAGGCGTCGCAGAAAGCTTTCACGACCGTTGCGATGAGCCT
GAACGCCGCTCAGCGGGATGCCCTCAAAGCATCCGACGAGGTCATAGAAG
CGGCCAGGGAAGCGTTCGGTGAAGACCCTAAAGCTCCTTCAGACTCCGCT
TTCGGCAGCGCACAGATGGACCCGTTTTCCGCTCTGCCGCAGGAGAAACG
CTCATCATCATCGCGTTCATTGTCACAAGAATTACGACAGGCCCATCTGA
GACTGGCAAGGGTTGAGCAACAACTTGCTCTCATCAACGTCTCTTCCGGC
AGCAACGCTGATCGATATGCGCCAACATCACCGGAGGTTGCCGCTGCTAG
CAAGAGACTCAGGAGACTTCTGCAGAGGCACCTCCGCGTTACGGAGAAGG
AGAATTCCGCCACCCGCGCTGCTACTGCCAGCGATGGCGACTACGCGAAG
CTGACGGTCCACGGCTACCACCAGAACGCGCAGGTCCTCGTCGACACCTA
CCGCTGCTCCGGAAGCGCGTGTCAAGTCTTCAGCCTCTTGCGGAAGTATA
AACGTTTCGCGGCGCAGAAGGCAAAGATGGACGCGTCCGTGGTTACCCAT
CTCCACAACGTGGCTACCTCCAGGTACGGTAGCCTACTCGCCGAGCGGGA
AGGGTTCAAAGGCGTTCTGTGGTAG