mRNA_E_fasciculatus_S2_contig8164.16317.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8164.16317.1
Unique NamemRNA_E_fasciculatus_S2_contig8164.16317.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig8164.16317.1 vs.
Match: Inversin (protein alternative isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME6_ECTSI)

HSP 1 Score: 763 bits (1970), Expect = 5.570e-273
Identity = 390/422 (92.42%), Postives = 399/422 (94.55%), Query Frame = 1
Query:   52 MDADKRLLREVQNGNLQGVDEALAAGANVNGSSRLSCRPLICAARWGNCKIAKRLIEKRANLELVVADETECGGISPFYPVGSNALHAAVSFGMEVGMIRVLLDGGANPDAQDIDGCTALANACSVLDPDERLAMVRELLRGGATAFSKTFKGTSPAHFAASKGDCRLLELLLSEAPAMINHVNDDFGTPMAFAASTGQDKVVSFLVSAGASDEAVLSHERGSLFMAMCRGYTNVVRVLLSSQEALKAAGGVDEIRHAMCWAMQQGQAEILRLLISVGGQPRTWSNQLVLVPGRLSDNQVEVPALQCAVCYQCLESTKLLLEAGADERFLTDHKPADLLGAVGLLLDAEDRDPLKAAEIVRVLRRAPASRARSWRWPAATTTP-VEADFDAGDDAAAPLGAQIFWPAGRNFFTKRFEKYAKK 1314
            MDADKRLL+EVQNGNL+GVDEALAAGANVNGSSRLSCRPLICAARWGNCKIAKRLIEK ANLEL V DET  GGISP YPVGSNALHAAVSFG+EVGMIRVLLDGGANPDAQDIDGCTALANACSVLDPDERLAMVRELLRGGATAFSKTFKGTSPAHFAASKGDCRLLELLLSEAPAMINHVNDDFGTPMAFAASTGQDK VSFLVSAGASDEAVLSHERGSLFMA+CRG+TNVVRVLLSS EALKAAGG DEIRHAMCWAMQQGQ E LRLLISVGG+ R WSNQLVLVPGRLSDNQVEVPALQCAVCYQC+ESTKLLLEAGADERFLT+HKPADLLGAVGLLLDAEDRD  KAAEIVRVLRRAPA RARSWRWP AT TP V+A  D GDDAA PLGAQIFWPAGRNFFTKRFEKYAKK
Sbjct:    1 MDADKRLLQEVQNGNLKGVDEALAAGANVNGSSRLSCRPLICAARWGNCKIAKRLIEKGANLELAVTDETGFGGISPLYPVGSNALHAAVSFGVEVGMIRVLLDGGANPDAQDIDGCTALANACSVLDPDERLAMVRELLRGGATAFSKTFKGTSPAHFAASKGDCRLLELLLSEAPAMINHVNDDFGTPMAFAASTGQDKAVSFLVSAGASDEAVLSHERGSLFMALCRGFTNVVRVLLSSPEALKAAGGYDEIRHAMCWAMQQGQPESLRLLISVGGKTRYWSNQLVLVPGRLSDNQVEVPALQCAVCYQCVESTKLLLEAGADERFLTNHKPADLLGAVGLLLDAEDRDLQKAAEIVRVLRRAPAFRARSWRWPGATATPPVDAGSDPGDDAATPLGAQIFWPAGRNFFTKRFEKYAKK 422          
BLAST of mRNA_E_fasciculatus_S2_contig8164.16317.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK53_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 4.540e-50
Identity = 151/423 (35.70%), Postives = 216/423 (51.06%), Query Frame = 1
Query:   61 DKRLLREVQNGNLQGVDEALAAGANVNGSSRLSCRPLICAARWGNCKIAKRLIEKRANLELVVADETECGGISPFYPVGSNALHAAVSFGMEVGMIRVLLDGGANPDAQDIDGCTALANACSVLDPDERLAMVRELLRGGATAFSKTFKGTSPAHFAASKGDCRLLELLLSEAPAMINHVNDDFGTPMAFAASTGQDKVVSFLVSAGASDEAVLSHERGSLFMAMCRGYTNVVRVLLSSQEALKAAGGVDEIRHAMCWAMQQGQAEILRLLISVGGQP--RTWSNQLVLVPGRLSDNQVEVPALQCAVCYQCLESTKLLLEAGADERFLTDH-KPADLLGAVGLLLDAEDRDPLKAAEIVRVLRRAPASRARSWRWPAATTTPVEAD--FDAGDDAAAPLGAQIFWPAGRNFFTKRFEKYAKK 1314
            D+RLL EV+ GNL GV + LA GANV+GS  L   P++ AAR GN  + K LI K A+LE      TE       +P GS A+HAA+S G     + VLL+ GA+ +++D  G T L         D    + REL + GA+ F K   G S  H AA  G+  ++ ++L+  P+ +N +++   TPM  AA  GQ + V  L+SAGASD  V   +  ++  A   G+  +VR++L  +  +   GG+  I +++  A+Q  QA+IL +L+S  G+   R W+        RL D       L  A  +  + +  +LL AGA E     + K A     + L   A  R P K A +VR+L+R PA RARS+ WP        +D    +    A   G QIF P G  FF  RF +YA K
Sbjct:    8 DRRLLMEVEKGNLSGVKKLLAGGANVDGSRELEYPPIMGAARNGNAAMLKLLISKGADLE------TEAR-----FPAGSRAIHAAIS-GENPTALSVLLEAGADFNSRDGAGETPLMLTALA---DTGALLARELFKVGASPFVKNADGMSAMHVAAGLGNLEVMTVILTNTPSALNVLDNKGFTPMGIAALRGQRRAVFHLLSAGASDLGV-DEQNAAILWACDGGHPRMVRMML--EHGINRVGGLGAIPNSIGVAVQGRQAKILEMLVSAEGEENRRKWAEC------RLRDGT----PLHLAAAWVSVRAIHVLLSAGARETLPNGYGKLASEEVGIALRPPAR-RSPRKEAAVVRMLQRGPAYRARSYGWPTLDGGNGTSDVTLSSRTRGANSFGVQIFRPTGTRFFATRFARYANK 401          
BLAST of mRNA_E_fasciculatus_S2_contig8164.16317.1 vs.
Match: Ion_trans (domain-containing protein n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TY38_POCDA)

HSP 1 Score: 69.3 bits (168), Expect = 1.990e-8
Identity = 64/200 (32.00%), Postives = 95/200 (47.50%), Query Frame = 1
Query:   85 QNGNLQGVDEALAAGANVNGSSRLSCRPLICAARWGNCKIAKRLIEKRANLELVVADETECGGISPFYPVGSNALHAAVSFGMEVGMIRVLLDGGANPDAQDIDGCTALANACSVLDPDERLAMVRELLRGGATAFSKTFKGTSPAHFAASKGDCRLLELLLSEAPAMINHVNDDFGTPMAFAASTGQDKVVSFLVSAGA 684
            +N   Q +DE +      N   R+S      A R G   + +RLI    +    V +E +  G++P +       HAA   G  V ++++LL  GA+ D      C  +         D   A  R L++ GA    KT  G SP H+AA KG  R+LE+LL+E  A ++H ++D  TP+  AA  GQ +V+  LV  GA
Sbjct:   42 ENSLQQSIDETVER----NPCKRISLHQ---ACRDGLATVVERLIRVNPS----VCNEYDKDGMAPLH-------HAAR--GNFVQIMKLLLKAGADIDIPATKNCMYVTPLICASKFDSFDAC-RVLIQNGAQITKKTCNGQSPLHYAARKGHTRVLEVLLNEGEADVDHEDNDKATPLHTAAQAGQIEVIRKLVFYGA 220          
BLAST of mRNA_E_fasciculatus_S2_contig8164.16317.1 vs.
Match: Uncharacterized (protein n=3 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I4ZK97_9CHLR)

HSP 1 Score: 63.5 bits (153), Expect = 1.070e-6
Identity = 87/319 (27.27%), Postives = 127/319 (39.81%), Query Frame = 1
Query:  199 KIAKRLIEKRANLELVVADETECGGISPFYPVGSNALHAAVSFGMEVGMIRVLLDGGANPDAQDIDGC------TAL-------------ANACSVLDPDERLAMVRE----------LLRGGATAFSKTFKGTSPAHFAASKGDCRLLELLLSEAPAMINHVNDDFGTPMAFAASTGQDKVVSFLVSAGASDEAVLSHERGSLFMAMCRGYTNVVRVLLSSQEALKAAGGVDEIRHAMCWAMQQGQAEILRLLISVGGQPRTWSNQLVLVPGRLSDNQVEVPALQCAVCYQCLESTKLLLEAGADERFLTDHKPADLL 1068
            ++A+ LI+  A+++ V   E           VGS  L AA   G  VGM+R+LL  GA+P+    DG       TA+             A A   +    R+ M+ E          LL G      +  +G  P   AA  GD  +  LLL E  A +N  +    TP+  A S G D  V  L++ G S +         +F A+       VR LL       AA  V E    + WA +    EI+R+L+  G +P  W +           +     AL   + YQ  +  +L+L+ GAD  F  +   A  L
Sbjct:  165 QVAQLLIDHGADIDAVGGQENT---------VGSTPLDAAAWAG-RVGMVRLLLKNGADPEKGGHDGVDYNPVSTAVSHGRKEIFKLLIEAGARYGIQHTIRMGMLEETRELLDTDPSLLNGTKKVDPRWPEGEVPLVLAA--GDRDIFNLLL-ERGADVNARDPQGYTPLMAARSMGNDTAVQALLARGVSQD---------IFGAIMDKDAERVRELLRDDPT--AANPVGEGPVPLIWAGRYSDYEIIRMLLEAGAEPNVWRDV----------DHFGKTALDMVISYQEDDVVQLMLDHGADPEFKGEGNQASTL 449          
BLAST of mRNA_E_fasciculatus_S2_contig8164.16317.1 vs.
Match: C-type (cytochrome n=3 Tax=Mesorhizobium TaxID=68287 RepID=A0A526NYI9_9HYPH)

HSP 1 Score: 61.6 bits (148), Expect = 1.340e-6
Identity = 52/164 (31.71%), Postives = 79/164 (48.17%), Query Frame = 1
Query:   85 QNGNLQGVDEALAAGANVNGSSRLSCRPLICAARWGNCKIAKRLIEKRANLELVVADETECGGISPFYPVGSNALHAAVSFGMEVGMIRVLLDGGANPDAQ-DIDGCTALANACSVLDPDERLAMVRELLRGGATAFSKTFKGTSPAHFAASKGDCRLLELLLS 573
            + G++  +  AL AGA+V+ S   S  PL  A R G+  +AK L+E+ A++    A     G   P  P  + +          + +I +LLDGGANP+AQ   +    +A     LD       V+ L+ GGA   +KT  G +P H A  KG   + + L+S
Sbjct:   29 KEGDVAAITAALDAGADVDESDG-SATPLYLAVRGGHFAVAKLLVERGADVN--AAPTPRLG--PPLMPALAKS---------RIDLINLLLDGGANPNAQRGREAALHIAVRSGCLD------CVKALVEGGADVNAKTKDGKTPLHMAVLKGQREVADYLVS 172          
BLAST of mRNA_E_fasciculatus_S2_contig8164.16317.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fusarium oxysporum TaxID=5507 RepID=A0A420PRR0_FUSOX)

HSP 1 Score: 62.0 bits (149), Expect = 2.270e-6
Identity = 67/229 (29.26%), Postives = 99/229 (43.23%), Query Frame = 1
Query:   82 VQNGNLQGVDEALAAGANVNGSSRLSCRPLICAARWGNCKIAKRLIEKRANLELVVADETECGGISPFYPVGSNALHAAVSFGMEVGMIRVLLDGGANPDAQDIDGCTALANACSVLDPDERLAMVRELLRGGATAFSKTFKGTSPAHFAASKGDCRLLELLLSEAPAMINHVNDDFGTPMAFAASTGQDKVVSFLVSAGASDEAVLSHERGSLFMAMCRGYTNVVRVL 768
            + N N +G+++ +AA A++N  +     PL+ A+ +G   + K+L        L  ++   C G S    VG  ALH AV  G     +R+LL+GGA+    +  G T          P  RLA  R+    G     +                  ++ELL +   A I   N D  TPM +A + G   V+  LV AG S  A+ SH +G L  A C    +VV  L
Sbjct:  135 IGNNNFEGLEQLIAANADINRQTGFGNTPLMRASYYGRDTMVKKL--------LGYSESRRCIGQST--AVGQTALHFAVQSGSAT-CVRLLLEGGASALKLNQLGET----------PMHRLAWGRQ---DGQQEIDE------------------IIELLQAHG-ADIESKNRDGWTPMFWACAKGNVPVLKALVRAGGSLSAISSHRQGILHRAACSNNFDVVHCL 320          
BLAST of mRNA_E_fasciculatus_S2_contig8164.16317.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fusarium oxysporum Fo47 TaxID=660027 RepID=A0A6M7YWJ8_FUSOX)

HSP 1 Score: 61.2 bits (147), Expect = 4.690e-6
Identity = 67/235 (28.51%), Postives = 97/235 (41.28%), Query Frame = 1
Query:   82 VQNGNLQGVDEALAAGANVNGSSRLSCRPLICAARWGNCKIAKRLIEKRANLELVVADETECGGISPFYPVGSNALHAAVSFGMEVGMIRVLLDGGANPDAQDIDGCTALANACSVLDPDERLAMVRELLRGGATAFSKTFKGTSPAH-FAASKGDCR-----LLELLLSEAPAMINHVNDDFGTPMAFAASTGQDKVVSFLVSAGASDEAVLSHERGSLFMAMCRGYTNVVRVL 768
            + N N +G+++ +AA A++N  +     PL+ A+ +G   + K+L        L  ++   C G S    VG  ALH AV  G                           +  C           VR LL GGA+A      G +P H  A  + D +     ++ELL +   A I   N D  TPM +A + G   V+  LV AG S  A+ SH +G L  A C    +VV  L
Sbjct:  238 IGNNNFEGLEQLIAANADINRQTGFGNTPLMRASYYGRDTMVKKL--------LGYSESRRCIGQST--AVGQTALHFAVQSG---------------------------SATC-----------VRLLLEGGASALKLNQLGETPMHRLAWGRQDDQQEIDEIIELLQAHG-ADIESKNRDGWTPMFWACAKGNVPVLKALVRAGGSLSAISSHRQGILHRAACSNNFDVVHCL 423          
BLAST of mRNA_E_fasciculatus_S2_contig8164.16317.1 vs.
Match: Uncharacterized (protein n=7 Tax=Fusarium oxysporum TaxID=5507 RepID=X0BM86_FUSOX)

HSP 1 Score: 61.2 bits (147), Expect = 5.700e-6
Identity = 67/235 (28.51%), Postives = 97/235 (41.28%), Query Frame = 1
Query:   82 VQNGNLQGVDEALAAGANVNGSSRLSCRPLICAARWGNCKIAKRLIEKRANLELVVADETECGGISPFYPVGSNALHAAVSFGMEVGMIRVLLDGGANPDAQDIDGCTALANACSVLDPDERLAMVRELLRGGATAFSKTFKGTSPAH-FAASKGDCR-----LLELLLSEAPAMINHVNDDFGTPMAFAASTGQDKVVSFLVSAGASDEAVLSHERGSLFMAMCRGYTNVVRVL 768
            + N N +G+++ +AA A++N  +     PL+ A+ +G   + K+L        L  ++   C G S    VG  ALH AV  G                           +  C           VR LL GGA+A      G +P H  A  + D +     ++ELL +   A I   N D  TPM +A + G   V+  LV AG S  A+ SH +G L  A C    +VV  L
Sbjct:  489 IGNNNFEGLEQLIAANADINRQTGFGNTPLMRASYYGRDTMVKKL--------LGYSESRRCIGQST--AVGQTALHFAVQSG---------------------------SATC-----------VRLLLEGGASALKLNQLGETPMHRLAWGRQDDQQEIDEIIELLQAHG-ADIESKNRDGWTPMFWACAKGNVPVLKALVRAGGSLSAISSHRQGILHRAACSNNFDVVHCL 674          
BLAST of mRNA_E_fasciculatus_S2_contig8164.16317.1 vs.
Match: ankyrin-3-like (n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B26EB)

HSP 1 Score: 61.2 bits (147), Expect = 6.010e-6
Identity = 49/154 (31.82%), Postives = 76/154 (49.35%), Query Frame = 1
Query:  217 IEKRANLELVVADETECGGISPFYPVGSNALHAAVSFGMEVGMIRVLLDGGANPD--AQDIDGCTALANACSVLDPDERLAMVRELLRGGATAFSKTFKGTSPAHFAASKGDCRLLELLLSEAPAMINHVNDDFGTPMAFAASTGQDKVVSFLV 672
            +EK    +    +E +  G++P +       HAA   G  + +I  LL+ GA+ D  A    G        S  D  E     R L++ GA  FS+   G SP H+AA KG+ R++E+LL+E    +N  ++D  TP+  AA  GQ +V+  L+
Sbjct:  102 VEKLLKADPAACNELDKDGLAPLH-------HAAR--GSHLQIIDCLLNAGADIDIVASSQAGFMTPLICASKFDAHEAC---RLLIQRGAEVFSRCCIGQSPLHYAARKGNIRVIEVLLTEGKVPVNLEDNDKATPLHTAALVGQTQVIHKLI 243          
BLAST of mRNA_E_fasciculatus_S2_contig8164.16317.1 vs.
Match: transient (receptor potential cation channel subfamily A member 1-like isoform X1 n=3 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3C1C6)

HSP 1 Score: 61.2 bits (147), Expect = 6.320e-6
Identity = 49/154 (31.82%), Postives = 76/154 (49.35%), Query Frame = 1
Query:  217 IEKRANLELVVADETECGGISPFYPVGSNALHAAVSFGMEVGMIRVLLDGGANPD--AQDIDGCTALANACSVLDPDERLAMVRELLRGGATAFSKTFKGTSPAHFAASKGDCRLLELLLSEAPAMINHVNDDFGTPMAFAASTGQDKVVSFLV 672
            +EK    +    +E +  G++P +       HAA   G  + +I  LL+ GA+ D  A    G        S  D  E     R L++ GA  FS+   G SP H+AA KG+ R++E+LL+E    +N  ++D  TP+  AA  GQ +V+  L+
Sbjct:  102 VEKLLKADPAACNELDKDGLAPLH-------HAAR--GSHLQIIDCLLNAGADIDIVASSQAGFMTPLICASKFDAHEAC---RLLIQRGAEVFSRCCIGQSPLHYAARKGNLRVIEVLLTEGKVPVNLEDNDKATPLHTAALVGQTQVIHKLI 243          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8164.16317.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
Inversin5.570e-27392.42protein alternative isoform n=1 Tax=Ectocarpus sil... [more]
Uncharacterized4.540e-5035.70protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ion_trans1.990e-832.00domain-containing protein n=1 Tax=Pocillopora dami... [more]
Uncharacterized1.070e-627.27protein n=3 Tax=Dehalococcoidia bacterium TaxID=20... [more]
C-type1.340e-631.71cytochrome n=3 Tax=Mesorhizobium TaxID=68287 RepID... [more]
Uncharacterized2.270e-629.26protein n=1 Tax=Fusarium oxysporum TaxID=5507 RepI... [more]
Uncharacterized4.690e-628.51protein n=1 Tax=Fusarium oxysporum Fo47 TaxID=6600... [more]
Uncharacterized5.700e-628.51protein n=7 Tax=Fusarium oxysporum TaxID=5507 RepI... [more]
ankyrin-3-like6.010e-631.82n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI0... [more]
transient6.320e-631.82receptor potential cation channel subfamily A memb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8164contigE_fasciculatus_S2_contig8164:3860..6771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score768.5
Seed ortholog evalue1.7e-219
Seed eggNOG ortholog2880.D8LME6
Model size2029
KEGG koko:K10380
KEGG Pathwayko04624,ko05205,map04624,map05205
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-05_002480.1
Cds size1266
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842478.0249665-UTR-E_fasciculatus_S2_contig8164:3859..39101696842478.0249665-UTR-E_fasciculatus_S2_contig8164:3859..3910Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8164 3860..3910 +
1696842478.0753322-UTR-E_fasciculatus_S2_contig8164:6059..67711696842478.0753322-UTR-E_fasciculatus_S2_contig8164:6059..6771Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig8164 6060..6771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842478.0378165-CDS-E_fasciculatus_S2_contig8164:3910..48071696842478.0378165-CDS-E_fasciculatus_S2_contig8164:3910..4807Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8164 3911..4807 +
1696842478.0530627-CDS-E_fasciculatus_S2_contig8164:5015..53681696842478.0530627-CDS-E_fasciculatus_S2_contig8164:5015..5368Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8164 5016..5368 +
1696842478.0661147-CDS-E_fasciculatus_S2_contig8164:6043..60591696842478.0661147-CDS-E_fasciculatus_S2_contig8164:6043..6059Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8164 6044..6059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8164.16317.1prot_E_fasciculatus_S2_contig8164.16317.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8164 3911..6059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8164.16317.1

>prot_E_fasciculatus_S2_contig8164.16317.1 ID=prot_E_fasciculatus_S2_contig8164.16317.1|Name=mRNA_E_fasciculatus_S2_contig8164.16317.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=422bp
MDADKRLLREVQNGNLQGVDEALAAGANVNGSSRLSCRPLICAARWGNCK
IAKRLIEKRANLELVVADETECGGISPFYPVGSNALHAAVSFGMEVGMIR
VLLDGGANPDAQDIDGCTALANACSVLDPDERLAMVRELLRGGATAFSKT
FKGTSPAHFAASKGDCRLLELLLSEAPAMINHVNDDFGTPMAFAASTGQD
KVVSFLVSAGASDEAVLSHERGSLFMAMCRGYTNVVRVLLSSQEALKAAG
GVDEIRHAMCWAMQQGQAEILRLLISVGGQPRTWSNQLVLVPGRLSDNQV
EVPALQCAVCYQCLESTKLLLEAGADERFLTDHKPADLLGAVGLLLDAED
RDPLKAAEIVRVLRRAPASRARSWRWPAATTTPVEADFDAGDDAAAPLGA
QIFWPAGRNFFTKRFEKYAKK*
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mRNA from alignment at E_fasciculatus_S2_contig8164:3860..6771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8164.16317.1 ID=mRNA_E_fasciculatus_S2_contig8164.16317.1|Name=mRNA_E_fasciculatus_S2_contig8164.16317.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2912bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8164:3860..6771+ (Ectocarpus fasciculatus EfasUO2)
CCGTTTTCTTCCAACAGCAGCTTCGTTTCGTTTGGTGGATTGAGCACGAT CATGGATGCCGATAAGCGGCTACTGCGGGAGGTGCAGAATGGGAACCTGC AAGGCGTGGACGAAGCGTTGGCGGCTGGCGCGAATGTGAACGGATCATCA CGCCTCTCCTGCCGACCTCTCATATGCGCTGCCAGATGGGGCAACTGCAA GATTGCCAAGCGCCTGATCGAGAAACGAGCGAACTTAGAGCTGGTGGTTG CCGATGAAACGGAGTGTGGTGGGATCAGCCCTTTCTACCCCGTCGGCTCA AACGCTCTGCACGCAGCGGTATCATTCGGCATGGAAGTGGGCATGATCCG GGTGCTGCTTGACGGAGGAGCAAACCCCGACGCCCAAGACATCGACGGCT GTACAGCTCTCGCGAACGCGTGCTCGGTACTCGATCCGGACGAACGCTTG GCGATGGTGCGCGAGCTGCTGCGGGGAGGCGCCACTGCCTTCTCCAAGAC GTTCAAGGGTACGTCGCCGGCCCACTTTGCGGCATCGAAAGGCGACTGCC GACTGCTGGAGCTCCTCCTCTCCGAGGCCCCCGCAATGATAAACCACGTA AACGATGACTTCGGAACACCTATGGCTTTCGCCGCCAGCACCGGCCAAGA CAAGGTTGTGTCCTTTCTGGTATCCGCAGGGGCGAGCGACGAAGCAGTCC TCTCCCATGAACGGGGATCGCTCTTCATGGCAATGTGCCGGGGCTACACC AACGTTGTGCGTGTCCTCCTTTCAAGCCAGGAGGCATTGAAAGCCGCCGG AGGCGTTGACGAGATTCGCCACGCCATGTGCTGGGCGATGCAACAGGGAC AGGCCGAAATCCTTCGATTGCTGATCAGCGTGGGGGGTCAGCCCAGGACT TGGTCCAACCAGCTTGTGCTCGTGCCGGGTAGGCTATCCGACAACCAGGT GCGCAAGGGGCAGCATGCGCTTGAGCCAAATGATCATCACTAGGTTGGCT AATGTTTATGCTGGTTAAGCGTTGTGGCCTGGTTCATCCTGTGCCTCCGA GGCCATGACAGTGATCACATCGCAACGAAATGCTGCGACTGTTTCGATGG ATCTTTCTGGCCACAGTTTAACACGTCATCTCCGTTCTGCTCCAATCCCG CATCAGGTCGAAGTGCCTGCTTTGCAGTGTGCTGTGTGCTATCAGTGCCT TGAGTCAACGAAACTCCTTCTCGAGGCGGGGGCGGACGAAAGGTTCTTGA CCGATCACAAGCCCGCAGATCTATTGGGTGCGGTTGGACTGCTCCTTGAT GCCGAGGACAGAGACCCGCTCAAAGCGGCGGAAATTGTACGAGTGCTACG GAGAGCACCAGCTTCCCGGGCTCGATCGTGGAGGTGGCCTGCGGCGACAA CAACTCCTGTGGAGGCGGATTTTGATGCTGGTGACGATGCCGCCGCACCG TTGGGTGCACAGATTTTCTGGCCGGCAGGCAGAAACTTCTTCACCAAGCG CTTTGAAAAGTGAGGCTGGGGAGGATGACGGGTGCACCACCCTTTGAAAC AGCTTGCGAAGTTTGTGTCTTGCACATGGGGCGGACCATTCGTTGGTGTG CCTTGTGGCAGTGTCTTGTACTGCTGTGGTATTTTGGGTACGATGGCGCC ACGACGGTTGTTGGTGCACCACTCAATGCTTCCTGCCTACTTACGACAGT ATGACCCGGAAGAGGTACATGCATGTGGTGGGCCGTAACCCGCTTTCGCG GGACGAAACGCTCTTCATTGATTATGCGCAACATATGATCTGGAATATAT GCCCCTAGCTGGGCGCCATCAGATCACCTACCTATTCCATGGATTGTCCC GACGGACCTATACTTTCTGGCGATGGAAACGTGGTCGTGGGGCACGGGGA ACCGTAACCCTTGCCCTTTATTGTTCATGGGTCGAGCAAGGAAATTGGTT CCATAATGAGGGGTTGGAGCTCTCCATGTTGGCACCAAGACAGGTTATAC ATGCATCTAGCCGCAGTGCACTTGCGCGGGATGACACCGAAACTGCTTAA GACACCATCTTGATTATCAACACGCGGACGGCTTTGTGTTTTGAAGCAGG TGATCAAGACCAGCAGATCAAACTGTCACTCCGTGTCGGCTTTTACATTC TCTCGCGTCCTCTTGCGCGTCTTACTCGTGCCAGGTACGCGAAGAAATGA AGATCAACGCCGGAAGTAGGAGGGTACGTTTTTTTTACGTCCGCAAATGA GGAGCGCTAAATAGGCACCGCGGCAGCCGTTCACGACCTTTCAGCATCTT CTTGGGATCGCGTACCGCTCTAGCCGCAGCGATATCAAACCGAAATCAGG TCCATGTTTCGTAGGTGGGGGGTGAAGTTTGACATGCGACGTGCTTCATT GCTGTGTTGCGGCAATGACGTTAGTGACCCCGTTTACCACGTACCATACT GCTGTTGTGCACCAAAAGTTGAGGAGAAAGTATAGTAGCGGTAGACAGCA GTCATGAGTAGTTTCGAGGATGACAGGTGTTGGCTTCTTGTTAGTCGCAA AGCTGAAGTTTTCCTTCCGAATTATCATTCCCAGTCTTCACTTACAGCAG CAGTATACCTGCGGAAAGTGCGGGGTTACTCTGTAGATCAGTGTACCGGT GGGTGATTTGTCAACTGCTAGATCCTGGGGCCGTTTGGGCTGTCGGGGCA ACAATGTCCGAATTACGGTGAGAGAAGGCAGCGGAGATGGAAGCACCCAA ATGTATATATGTAGCGTGTGATGGAAGAAGGCGACACTTTCTTTTTTTAA GTAACAACCGTTTCGCAAGAACGTTTTTCGCTCGCGTTGGAATGGTTCTG AGAAGCAATCATGAATCCATCGCGCACAAATTAAATGTGTGGCTTAGGCC ACTTGTTACGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8164:3860..6771+

>mRNA_E_fasciculatus_S2_contig8164.16317.1 ID=mRNA_E_fasciculatus_S2_contig8164.16317.1|Name=mRNA_E_fasciculatus_S2_contig8164.16317.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1266bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8164:3860..6771+ (Ectocarpus fasciculatus EfasUO2)
ATGGATGCCGATAAGCGGCTACTGCGGGAGGTGCAGAATGGGAACCTGCA
AGGCGTGGACGAAGCGTTGGCGGCTGGCGCGAATGTGAACGGATCATCAC
GCCTCTCCTGCCGACCTCTCATATGCGCTGCCAGATGGGGCAACTGCAAG
ATTGCCAAGCGCCTGATCGAGAAACGAGCGAACTTAGAGCTGGTGGTTGC
CGATGAAACGGAGTGTGGTGGGATCAGCCCTTTCTACCCCGTCGGCTCAA
ACGCTCTGCACGCAGCGGTATCATTCGGCATGGAAGTGGGCATGATCCGG
GTGCTGCTTGACGGAGGAGCAAACCCCGACGCCCAAGACATCGACGGCTG
TACAGCTCTCGCGAACGCGTGCTCGGTACTCGATCCGGACGAACGCTTGG
CGATGGTGCGCGAGCTGCTGCGGGGAGGCGCCACTGCCTTCTCCAAGACG
TTCAAGGGTACGTCGCCGGCCCACTTTGCGGCATCGAAAGGCGACTGCCG
ACTGCTGGAGCTCCTCCTCTCCGAGGCCCCCGCAATGATAAACCACGTAA
ACGATGACTTCGGAACACCTATGGCTTTCGCCGCCAGCACCGGCCAAGAC
AAGGTTGTGTCCTTTCTGGTATCCGCAGGGGCGAGCGACGAAGCAGTCCT
CTCCCATGAACGGGGATCGCTCTTCATGGCAATGTGCCGGGGCTACACCA
ACGTTGTGCGTGTCCTCCTTTCAAGCCAGGAGGCATTGAAAGCCGCCGGA
GGCGTTGACGAGATTCGCCACGCCATGTGCTGGGCGATGCAACAGGGACA
GGCCGAAATCCTTCGATTGCTGATCAGCGTGGGGGGTCAGCCCAGGACTT
GGTCCAACCAGCTTGTGCTCGTGCCGGGTAGGCTATCCGACAACCAGGTC
GAAGTGCCTGCTTTGCAGTGTGCTGTGTGCTATCAGTGCCTTGAGTCAAC
GAAACTCCTTCTCGAGGCGGGGGCGGACGAAAGGTTCTTGACCGATCACA
AGCCCGCAGATCTATTGGGTGCGGTTGGACTGCTCCTTGATGCCGAGGAC
AGAGACCCGCTCAAAGCGGCGGAAATTGTACGAGTGCTACGGAGAGCACC
AGCTTCCCGGGCTCGATCGTGGAGGTGGCCTGCGGCGACAACAACTCCTG
TGGAGGCGGATTTTGATGCTGGTGACGATGCCGCCGCACCGTTGGGTGCA
CAGATTTTCTGGCCGGCAGGCAGAAACTTCTTCACCAAGCGCTTTGAAAA
GTACGCGAAGAAATGA
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