mRNA_E_fasciculatus_S2_contig815.16305.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig815.16305.1
Unique Name	mRNA_E_fasciculatus_S2_contig815.16305.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig815.16305.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD53_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.200e-52
Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 1

Query:    1 GGPSDEGVVWVQCDTCKKWRRLPDFVDPDKLPLKWHCEMNIYDSARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIK 342
            GGPSDEGVVWVQCDTCKKWRRLPDFVDPD+LPLKWHCEMNIYD+ARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXX ESRAKDANLRRFLSGWARRIK
Sbjct:   59 GGPSDEGVVWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDAARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXX-ESRAKDANLRRFLSGWARRIK 171

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BLAST of mRNA_E_fasciculatus_S2_contig815.16305.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G2_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 5.590e-51
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 1

Query:    1 GGPSDEGVVWVQCDTCKKWRRLPDFVDPDKLPLKWHCEMNIYDSARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXXXESRAKDANLRRFLSGWARRIK 342
            GGPSDEGVVWVQCDTCKKWRRLPDFVDPD+LPLKWHCEMNIYD ARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXX ESRAKDANLRRFLSGWARRIK
Sbjct:  245 GGPSDEGVVWVQCDTCKKWRRLPDFVDPDQLPLKWHCEMNIYDVARANCRAKQESSTATLLEAERKVRQXXXXXXXXXXXXXXXXXXXXXXX-ESRAKDANLRRFLSGWARRIK 357

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BLAST of mRNA_E_fasciculatus_S2_contig815.16305.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQ09_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 6.370e-15
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1

Query:   25 VWVQCDTCKKWRRLPDFVDPDKLPLKWHCEMNIYDSARANCRAKQES 165
            VWVQC+TC KWR LP  VDPDKLP  W C++NIYD+ R NC A +ES
Sbjct:  114 VWVQCNTCDKWRSLPSTVDPDKLPDIWTCDLNIYDNTRNNCNAPEES 160

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BLAST of mRNA_E_fasciculatus_S2_contig815.16305.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AFB3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 7.340e-13
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1

Query:   28 WVQCDTCKKWRRLPDFVDPDKLPLKWHCEMNIYDSARANCRAKQESSTATLLEAERK 198
            WVQCD+CKKWR LPD V    LP +W+C MNIYD  R+NC+A +++    + E + +
Sbjct:  663 WVQCDSCKKWRVLPDTVKVSSLPEQWYCHMNIYDKKRSNCQAPEQNQKEAIKERKER 719

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BLAST of mRNA_E_fasciculatus_S2_contig815.16305.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVM1_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.390e-12
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1

Query:   13 DEGVVWVQCDTCKKWRRLPDFVDPDKLPLKWHCEMNIYDSARANCRAKQESSTATLLE 186
            +E   WVQCD+CKKWR LPD V    LP +W+C MNIYD  R NC+A ++++   L E
Sbjct: 1178 NEPNEWVQCDSCKKWRVLPDNVRASSLPDQWYCHMNIYDKKRNNCQAPEQNNKEVLKE 1235

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BLAST of mRNA_E_fasciculatus_S2_contig815.16305.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAQ7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.390e-11
Identity = 28/53 (52.83%), Postives = 33/53 (62.26%), Query Frame = 1

Query:    4 GPSDEGVVWVQCDTCKKWRRLPDFVDPDKLPLKWHCEMNIYDSARANCRAKQE 162
            G + +   WV+CD CKKWRRL   VD  KLP KW+C MN  D  RA C A +E
Sbjct:  146 GQNAQEATWVECDKCKKWRRLRGSVDAKKLPSKWYCSMNKNDPERAKCTAPEE 198

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BLAST of mRNA_E_fasciculatus_S2_contig815.16305.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GRD9_CYCTE)

HSP 1 Score: 66.6 bits (161), Expect = 1.930e-11
Identity = 27/47 (57.45%), Postives = 30/47 (63.83%), Query Frame = 1

Query:   22 VVWVQCDTCKKWRRLPDFVDPDKLPLKWHCEMNIYDSARANCRAKQE 162
              WV+CD CKKWRRL   VD  KLP KW+C MN  D  RA C A +E
Sbjct:   95 ATWVECDKCKKWRRLRGVVDEKKLPSKWYCSMNKNDPDRARCSAPEE 141

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BLAST of mRNA_E_fasciculatus_S2_contig815.16305.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DNR0_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.080e-11
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 1

Query:    1 GGPSDEGVVWVQCDTCKKWRRLPDFVDPDKLPLKWHCEMNIYDSARANCRA---KQESSTATLLEAERK 198
            G   + GV WVQCD+C KWR++PD VD  +LP KW C MN +D + A C A   ++   T    EA +K
Sbjct:    1 GSKKNRGV-WVQCDSCSKWRKIPDSVDASRLPDKWFCRMNTWDPSHARCDAVEDQEHKETHNASEASKK 68

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BLAST of mRNA_E_fasciculatus_S2_contig815.16305.1 vs.
Match: Hypothetical (protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y7B5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.190e-11
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1

Query:    1 GGPSDEGVVWVQCDTCKKWRRLPDFVDPDKLPLKWHCEMNIYDSARANCRAKQESS 168
            G  SDE   WVQCD C KWR LP   DP+ LP KW+C++N+ DS    C A ++++
Sbjct:  772 GDDSDEAPAWVQCDHCSKWRVLPSDADPETLPKKWYCQLNV-DSQHNTCEAPEQTA 826

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BLAST of mRNA_E_fasciculatus_S2_contig815.16305.1 vs.
Match: Cw-type (zinc finger (Fragment) n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KIK7_9APIC)

HSP 1 Score: 67.8 bits (164), Expect = 7.960e-11
Identity = 30/61 (49.18%), Postives = 38/61 (62.30%), Query Frame = 1

Query:    1 GGPSDEGVVWVQCDTCKKWRRLPDFVDPDKLPLKWHCEMNIYDSARANCRAKQESSTATLL 183
            GGP+ +   WVQC+ CKKWRRLP  VDP++LP  W C MN +D    +C   +E    TLL
Sbjct:  442 GGPAVDN--WVQCEACKKWRRLPASVDPEQLPDTWLCAMNHWDPLHDSCELPEEEYRDTLL 500

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig815.16305.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig815.16305.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	1.200e-52	97.37	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	5.590e-51	97.37	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Hypothetical	6.370e-15	65.96	protein (Fragment) n=1 Tax=Spumella elongata TaxID...	[more]
Hypothetical	7.340e-13	49.12	protein n=1 Tax=Pseudo-nitzschia australis TaxID=4...	[more]
Uncharacterized	1.390e-12	51.72	protein n=1 Tax=Pseudo-nitzschia multistriata TaxI...	[more]
Hypothetical	1.390e-11	52.83	protein (Fragment) n=1 Tax=Proboscia inermis TaxID...	[more]
Hypothetical	1.930e-11	57.45	protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID...	[more]
Hypothetical	2.080e-11	44.93	protein (Fragment) n=1 Tax=Dictyocha speculum TaxI...	[more]
Hypothetical	4.190e-11	48.21	protein n=1 Tax=Grammatophora oceanica TaxID=21045...	[more]
Cw-type	7.960e-11	49.18	zinc finger (Fragment) n=1 Tax=Cystoisospora suis ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig815	contig	E_fasciculatus_S2_contig815:25236..26094 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	0
Seed ortholog score	177.6
Seed ortholog evalue	3.4e-42
Seed eggNOG ortholog	2880.D8LD53
Model size	345
Hectar predicted targeting category	other localisation
GOs	GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043565,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1903506,GO:2000112,GO:2001141
Exons	2
EggNOG free text desc.	CW-type Zinc Finger
EggNOG OGs	2E11X@1,2S8EJ@2759
Ec32 ortholog description	CW-type zinc finger protein
Ec32 ortholog	Ec-11_000500.1
Cds size	345
COG Functional cat.	K
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842476.9509304-CDS-E_fasciculatus_S2_contig815:25235..25384	1696842476.9509304-CDS-E_fasciculatus_S2_contig815:25235..25384	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig815 25236..25384 +
1696842476.9628868-CDS-E_fasciculatus_S2_contig815:25898..26094	1696842476.9628868-CDS-E_fasciculatus_S2_contig815:25898..26094	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig815 25899..26094 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig815.16305.1	prot_E_fasciculatus_S2_contig815.16305.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig815 25236..26094 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig815:25236..26094+
coding sequence from alignment at E_fasciculatus_S2_contig815:25236..26094+

protein sequence of mRNA_E_fasciculatus_S2_contig815.16305.1

>prot_E_fasciculatus_S2_contig815.16305.1 ID=prot_E_fasciculatus_S2_contig815.16305.1|Name=mRNA_E_fasciculatus_S2_contig815.16305.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=115bp
GGPSDEGVVWVQCDTCKKWRRLPDFVDPDKLPLKWHCEMNIYDSARANCR
AKQESSTATLLEAERKVRQQKRRQQQQQREEEEDDEEEEESDEESRAKDA
NLRRFLSGWARRIK*

mRNA from alignment at E_fasciculatus_S2_contig815:25236..26094+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig815.16305.1 ID=mRNA_E_fasciculatus_S2_contig815.16305.1|Name=mRNA_E_fasciculatus_S2_contig815.16305.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=859bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig815:25236..26094+ (Ectocarpus fasciculatus EfasUO2)
GGCGGACCGTCGGATGAAGGGGTGGTGTGGGTGCAGTGCGACACGTGTAA
GAAGTGGCGCAGGCTGCCGGACTTCGTGGACCCAGATAAGCTCCCCCTCA
AGTGGCACTGCGAGATGAACATCTACGACTCCGCCAGAGCCAACTGCAGG
TATCTACGTGTGTCATATTTATTGTTAGCGCTGACCGACTGACGAATGAA
AAAAAAATTGTGAGGCTGAAAACATAAAACTGATTCCGATGAGTTCCTGC
TGGCGCGTGTCTTTTTGTGTTGTGTTGATCGGTTGTGTTCGGTTTGGGGT
TAGACTGCTGTCGCTTTAACCTACGGGACAGAAGCATGTTACGACCATTT
TTTTTTCAAGAAGACGGACGAATTTTGCAGAAATCCAGAACGCATGTGTG
GAAATTGAACACGATGGATGTTCGGTGTACTCAGCAGTACATGTAGATAC
GGATCTGCGGAGATCTAGGGGGAGTCGTTTTATCATGGCGGTATGTGTTT
GTAGAAAGGCGATCCCCGTTCAGGCCAGCGTGCCCTTTATTCACATCTCT
GACGATCGACACCCACTACCCAACAATGGGCACGACACCCACGGGACGAT
TCGTTCGAAAGTGAACACAACAAACACACACAAAACGACCCTTGTCGTTC
CGCCCCCTGGCAGAGCCAAGCAGGAGTCCTCGACCGCGACCCTGCTAGAA
GCGGAACGGAAAGTTCGGCAGCAGAAGCGTCGCCAGCAGCAGCAGCAGCG
GGAAGAGGAGGAGGACGATGAGGAGGAGGAGGAGTCGGACGAGGAAAGCA
GGGCCAAGGATGCCAACCTCCGCCGTTTCCTCTCGGGCTGGGCACGCCGC
ATAAAGTGA

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig815:25236..26094+

>mRNA_E_fasciculatus_S2_contig815.16305.1 ID=mRNA_E_fasciculatus_S2_contig815.16305.1|Name=mRNA_E_fasciculatus_S2_contig815.16305.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=345bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig815:25236..26094+ (Ectocarpus fasciculatus EfasUO2)
GGCGGACCGTCGGATGAAGGGGTGGTGTGGGTGCAGTGCGACACGTGTAA
GAAGTGGCGCAGGCTGCCGGACTTCGTGGACCCAGATAAGCTCCCCCTCA
AGTGGCACTGCGAGATGAACATCTACGACTCCGCCAGAGCCAACTGCAGA
GCCAAGCAGGAGTCCTCGACCGCGACCCTGCTAGAAGCGGAACGGAAAGT
TCGGCAGCAGAAGCGTCGCCAGCAGCAGCAGCAGCGGGAAGAGGAGGAGG
ACGATGAGGAGGAGGAGGAGTCGGACGAGGAAAGCAGGGCCAAGGATGCC
AACCTCCGCCGTTTCCTCTCGGGCTGGGCACGCCGCATAAAGTGA