mRNA_E_fasciculatus_S2_contig8147.16301.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig8147.16301.1
Unique NamemRNA_E_fasciculatus_S2_contig8147.16301.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig8147.16301.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH77_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 1.760e-55
Identity = 240/285 (84.21%), Postives = 248/285 (87.02%), Query Frame = 1 
Query:  103 SVLNNPDILGCLISFVPDESFLFFGPVSRGWRAAWGKRPTMTRIATPGLTPTQLKHGFDCGLARTNPELCAALSGLGDVDLLELARDSGCPWGKSTCXXXXXXXXXXXXXXXXXXXXXXHEEKVISLAXXXXXXXXXXXXXXXXXAMDRGAGWSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRDKGGXXXXXXXXXXXXXXXXXXXXXXXXEHGCEWDDXXXXXXXXXXXXXXXXXXXXXXXXINGPFCLETAIDSGHTHVAEWLQANGHAPA 957
            SVLNNPDILGCLISFV DESFLFFGPV R WRAAWG RPT TRIAT  LTPTQL+ GFDCGL RTNPELCAA++ LGDVDLLELARD+GC WG ST XXXXXXXXXXXXXXXXXXXXXX+E KVISL XXXXXXXXXXXXXXXXXA+DR AGWSAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXXXXXXXXXXXXX  G  CLETA+ SGHTHV EWLQANGHAP+
Sbjct:    8 SVLNNPDILGCLISFVADESFLFFGPVCRDWRAAWGNRPTTTRIATSDLTPTQLQRGFDCGLTRTNPELCAAIARLGDVDLLELARDNGCRWGASTXXXXXXXXXXXXXXXXXXXXXXXYEHKVISLXXXXXXXXXXXXXXXXXXAIDRSAGWSAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXGSLCLETALSSGHTHVVEWLQANGHAPS 291
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BLAST of mRNA_E_fasciculatus_S2_contig8147.16301.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH78_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 7.920e-22
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:  103 SVLNNPDILGCLISFVPDESFLFFGPVSRGWRAAWGKRPTMTRIATPGLTPTQLKHGFDCGLARTNPELCAALSGLGDVDLLELARDSGCP 375
            S + N +IL CL  FVPD  FLFF PV++GWRAAW +RPT+T   TP  T +QL+H F+CGL +    LCAAL+ LG ++LL  A  +GCP
Sbjct:  108 SAMTNRNILLCLAQFVPDNQFLFFAPVAKGWRAAW-QRPTITAHVTPDTTTSQLQHSFECGLPQNQTGLCAALARLGKLNLLACAVGAGCP 197
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig8147.16301.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.510e-20
Identity = 45/93 (48.39%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:  112 NNPDILGCLISFVPDESFLFFGPVSRGWRAAWGKRPTMTRIATPGLTPTQLKHGFDCGLARTNPELCAALSGLGDVDLLELARDSGCPWGKST 390
            +N D+L  ++ FV ++ FLFF PVSR WR AWG RP +T   T   + +QL++ F+ GL R  PELCAA++ LG+++LL  AR SGC W   T
Sbjct:   59 DNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCAWNGLT 151
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig8147.16301.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.760e-5584.21protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH77... [more]
Uncharacterized7.920e-2253.85protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.510e-2048.39protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig8147contigE_fasciculatus_S2_contig8147:5616..6581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score73.9
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog2880.D7FJY0
Model size966
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2AMK4@1,2RZCC@2759
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-13_004310.1
Cds size966
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842476.52525-CDS-E_fasciculatus_S2_contig8147:5615..65811696842476.52525-CDS-E_fasciculatus_S2_contig8147:5615..6581Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig8147 5616..6581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig8147.16301.1prot_E_fasciculatus_S2_contig8147.16301.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig8147 5616..6581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig8147.16301.1

>prot_E_fasciculatus_S2_contig8147.16301.1 ID=prot_E_fasciculatus_S2_contig8147.16301.1|Name=mRNA_E_fasciculatus_S2_contig8147.16301.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=322bp
TQAPTAHSTDGATAAATAAAAAAAAAASMPATVPSVLNNPDILGCLISFV
PDESFLFFGPVSRGWRAAWGKRPTMTRIATPGLTPTQLKHGFDCGLARTN
PELCAALSGLGDVDLLELARDSGCPWGKSTCNAAAASGSLEVLQWAKYHG
CPWHEEKVISLAAEGGHLHLIKWARMYGCAMDRGAGWSAAKAGRLDILQW
LVADGAPLDQYTCGAAAETGRMDVLTWLRDKGGAPWGKDTCVAAARGKQL
PVLKWLREHGCEWDDMTCYICAWNGDLETLVWSVENGCDINGPFCLETAI
DSGHTHVAEWLQANGHAPANT*
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mRNA from alignment at E_fasciculatus_S2_contig8147:5616..6581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig8147.16301.1 ID=mRNA_E_fasciculatus_S2_contig8147.16301.1|Name=mRNA_E_fasciculatus_S2_contig8147.16301.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=966bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8147:5616..6581- (Ectocarpus fasciculatus EfasUO2)
ACCCAGGCGCCCACGGCGCATTCGACCGACGGAGCAACAGCAGCAGCAAC
CGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCAGTATGCCAGCCACGGTCC
CTAGCGTCCTGAACAACCCAGACATTCTCGGCTGCCTGATCTCGTTCGTA
CCCGACGAGTCGTTCCTCTTCTTCGGGCCGGTGTCCCGAGGGTGGAGGGC
GGCGTGGGGGAAACGCCCGACCATGACCAGGATCGCAACGCCTGGCCTGA
CCCCGACCCAGCTCAAGCACGGCTTCGACTGCGGCCTGGCGCGCACCAAC
CCGGAGCTGTGCGCCGCCTTGTCGGGCCTCGGCGACGTGGACCTCCTCGA
GCTCGCGAGGGACAGCGGCTGCCCCTGGGGCAAGTCCACCTGCAACGCCG
CCGCGGCGTCGGGAAGCCTCGAGGTCCTCCAGTGGGCCAAGTACCACGGC
TGCCCCTGGCACGAGGAGAAGGTCATATCGCTGGCCGCCGAGGGCGGCCA
CCTACACCTCATCAAGTGGGCGAGGATGTACGGCTGCGCCATGGACCGGG
GCGCCGGGTGGTCCGCGGCGAAGGCGGGCCGGCTCGACATCCTGCAGTGG
CTGGTCGCGGACGGGGCGCCGCTTGACCAGTACACCTGCGGCGCCGCCGC
CGAGACGGGGCGGATGGACGTGCTCACCTGGCTGAGGGACAAGGGCGGCG
CGCCCTGGGGGAAGGACACGTGCGTGGCCGCGGCCCGGGGGAAGCAGCTG
CCGGTCCTCAAGTGGCTGAGGGAGCACGGGTGCGAGTGGGACGACATGAC
CTGCTACATCTGCGCCTGGAACGGTGACCTGGAGACCCTCGTCTGGTCCG
TCGAGAACGGCTGCGATATCAACGGCCCCTTTTGCCTCGAGACCGCGATC
GACTCCGGGCACACCCACGTCGCCGAGTGGCTTCAAGCCAACGGGCACGC
CCCCGCAAACACGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig8147:5616..6581-

>mRNA_E_fasciculatus_S2_contig8147.16301.1 ID=mRNA_E_fasciculatus_S2_contig8147.16301.1|Name=mRNA_E_fasciculatus_S2_contig8147.16301.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=966bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig8147:5616..6581- (Ectocarpus fasciculatus EfasUO2)
ACCCAGGCGCCCACGGCGCATTCGACCGACGGAGCAACAGCAGCAGCAAC
CGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCAGTATGCCAGCCACGGTCC
CTAGCGTCCTGAACAACCCAGACATTCTCGGCTGCCTGATCTCGTTCGTA
CCCGACGAGTCGTTCCTCTTCTTCGGGCCGGTGTCCCGAGGGTGGAGGGC
GGCGTGGGGGAAACGCCCGACCATGACCAGGATCGCAACGCCTGGCCTGA
CCCCGACCCAGCTCAAGCACGGCTTCGACTGCGGCCTGGCGCGCACCAAC
CCGGAGCTGTGCGCCGCCTTGTCGGGCCTCGGCGACGTGGACCTCCTCGA
GCTCGCGAGGGACAGCGGCTGCCCCTGGGGCAAGTCCACCTGCAACGCCG
CCGCGGCGTCGGGAAGCCTCGAGGTCCTCCAGTGGGCCAAGTACCACGGC
TGCCCCTGGCACGAGGAGAAGGTCATATCGCTGGCCGCCGAGGGCGGCCA
CCTACACCTCATCAAGTGGGCGAGGATGTACGGCTGCGCCATGGACCGGG
GCGCCGGGTGGTCCGCGGCGAAGGCGGGCCGGCTCGACATCCTGCAGTGG
CTGGTCGCGGACGGGGCGCCGCTTGACCAGTACACCTGCGGCGCCGCCGC
CGAGACGGGGCGGATGGACGTGCTCACCTGGCTGAGGGACAAGGGCGGCG
CGCCCTGGGGGAAGGACACGTGCGTGGCCGCGGCCCGGGGGAAGCAGCTG
CCGGTCCTCAAGTGGCTGAGGGAGCACGGGTGCGAGTGGGACGACATGAC
CTGCTACATCTGCGCCTGGAACGGTGACCTGGAGACCCTCGTCTGGTCCG
TCGAGAACGGCTGCGATATCAACGGCCCCTTTTGCCTCGAGACCGCGATC
GACTCCGGGCACACCCACGTCGCCGAGTGGCTTCAAGCCAACGGGCACGC
CCCCGCAAACACGTAG
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